Physical Sciences and Mathematics Commons^™

Symmetry Analysis Of The Canonical Connection On Lie Groups:Co-Dimension Two Abelian Nilradical With Abelian And Non Abelian Complement, Nouf Alrubea Almutiben

Theses and Dissertations

We consider the symmetry algebra of the geodesic equations of the canonical
connection on a Lie groups. We mainly consider the solvable indecomposable four,
five and six-dimensional Lie algebras with co-dimension two abelian nilradical, that
have an abelian and not abelian complement. In this particular case, we have only
one algebra in dimension four namely; A4,12 , and three algebras in dimension five
namely; A5,33, A5,34, and A5,35 In dimension six, based on the list of Lie algebras in
Turkowski’s list, there are nineteen such algebras namely; A6,1- A6,19 that have an
abelian complement, and there are eight algebras that …

Structured Invariant Subspace And Decomposition Of Systems With Time Delays And Uncertainties, Huan Phan-Van, Keqin Gu

SIUE Faculty Research, Scholarship, and Creative Activity

This article discusses invariant subspaces of a matrix with a given partition structure. The existence of a nontrivial structured invariant subspace is equivalent to the possibility of decomposing the associated system with multiple feedback blocks such that the feedback operators are subject to a given constraint. The formulation is especially useful in the stability analysis of time-delay systems using the Lyapunov-Krasovskii functional approach where computational efficiency is essential in order to achieve accuracy for large scale systems. The set of all structured invariant subspaces are obtained (thus all possible decompositions are obtained as a result) for the coupled differential-difference equations …

Mathematical Modeling Of Phage-Bacteria Population Dynamics, John Lawrence D. Palacios

Theses and Dissertations

Bacteriophages are viruses that infect and replicate within bacteria. Lytic phages cause the bacterial cell to burst, killing the bacteria. These types of phages can be used to treat patients with antibiotic-resistant bacterial infections. As a step in developing successful treatment protocols, we aim to understand the population dynamics of phages and bacteria using an in vitro model. We model the dynamics using the Campbell model, which consists of a delay differential equation (DDE), as a base model. We extended the model by including the emergence of phage resistance. We then compared the DDE model with a parallel ordinary differential …

Probabilistic Modeling Of Disease: Addressing Uncertainties In Within-Host And Population-Level Dynamics, Mariah Boudreau

Graduate College Dissertations and Theses

Mathematical modeling of disease dynamics provides powerful tools to understand, predict, and evaluate emerging diseases. These insights aid public health officials, along with other modelers. With a plethora of models to choose from, it is important to consider a model that encapsulates the stochastic nature of disease dynamics. Stochasticity not only conveys chances of stochastic extinction, but provides probabilistic outcomes, essential for capturing the stochastic nature of the real world. In this thesis, three stochastic models are presented, each addressing uncertainties in mechanisms and interpretation of these models, to aid other modelers and decision makers.Starting with the source of infection …

Leveraging Redundancy As A Link Between Spreading Dynamics On And Of Networks, Felipe Xavier Costa

Electronic Theses & Dissertations (2024 - present)

A constant quest in network science has been in the development of methods to identify the most relevant components in a dynamical system solely via the interaction structure amongst its subsystems. This information allows the development of control and intervention strategies in biochemical signaling and epidemic spreading. We highlight the relevant components in heterogeneous dynamical system by their patterns of redundancy, which can connect how dynamics affect network topology and which pathways are necessary to spreading phenomena on networks. In order to measure the redundancies in a large class of empirical systems, we develop the backbone of directed networks methodology, …

Sparse Representation Learning For Temporal Networks, Maxwell Mcneil

Electronic Theses & Dissertations (2024 - present)

Temporal networks arise in many domains including activity of social network users, sensor network readings over time, and time course gene expression within the interaction network of a model organism. Data of this type contains a wealth of prior information such as the connectivity among nodes (e.g., a friendship graph), and prior knowledge of expected temporal patterns (e.g., periodicity). Modeling these temporal and network patterns jointly is essential for state-of-the-art performance in temporal network data analysis and mining. Sparse dictionary encoding is one modeling approach for such underlying patterns. However, most classical approaches consider only one dimension of the data …

Echolocation On Manifolds, Kerong Wang

Honors Theses

We consider the question asked by Wyman and Xi [WX23]: ``Can you hear your location on a manifold?” In other words, can you locate a unique point x on a manifold, up to symmetry, if you know the Laplacian eigenvalues and eigenfunctions of the manifold? In [WX23], Wyman and Xi showed that echolocation holds on one- and two-dimensional rectangles with Dirichlet boundary conditions using the pointwise Weyl counting function. They also showed echolocation holds on ellipsoids using Gaussian curvature.

In this thesis, we provide full details for Wyman and Xi's proof for one- and two-dimensional rectangles and we show that …

The Precedence-Constrained Quadratic Knapsack Problem, Changkun Guan

Honors Theses

This thesis investigates the previously unstudied Precedence-Constrained Quadratic Knapsack Problem (PC-QKP), an NP-hard nonlinear combinatorial optimization problem. The PC-QKP is a variation of the traditional Knapsack Problem (KP) that introduces several additional complexities. By developing custom exact and approximate solution methods, and testing these on a wide range of carefully structured PC-QKP problem instances, we seek to identify and understand patterns that make some cases easier or harder to solve than others. The findings aim to help develop better strategies for solving this and similar problems in the future.

Reducing Generalization Error In Multiclass Classification Through Factorized Cross Entropy Loss, Oleksandr Horban

CMC Senior Theses

This paper introduces Factorized Cross Entropy Loss, a novel approach to multiclass classification which modifies the standard cross entropy loss by decomposing its weight matrix W into two smaller matrices, U and V, where UV is a low rank approximation of W. Factorized Cross Entropy Loss reduces generalization error from the conventional O( sqrt(k / n) ) to O( sqrt(r / n) ), where k is the number of classes, n is the sample size, and r is the reduced inner dimension of U and V.

Unveiling The Power Of Shor's Algorithm: Cryptography In A Post Quantum World, Dylan Phares

CMC Senior Theses

Shor's Algorithm is an extremely powerful tool, in utilizing this tool it is important to understand how it works and why it works. As well as the vast implications it could have for cryptography

Discontinuous Galerkin Methods For Compressible Miscible Displacements And Applications In Reservoir Simulation, Yue Kang

Dissertations, Master's Theses and Master's Reports

This dissertation contains research on discontinuous Galerkin (DG) methods applied to the system of compressible miscible displacements, which is widely adopted to model surfactant flooding in enhanced oil recovery (EOR) techniques. In most scenarios, DG methods can effectively simulate problems in miscible displacements.
However, if the problem setting is complex, the oscillations in the numerical results can be detrimental, with severe overshoots leading to nonphysical numerical approximations. The first way to address this issue is to apply the bound-preserving
technique. Therefore, we adopt a bound-preserving Discontinuous Galerkin method
with a Second-order Implicit Pressure Explicit Concentration (SIPEC) time marching
method to …

Robot-Based 3d Printing, Aaron Hoffman

Williams Honors College, Honors Research Projects

Details of a large-format 3D printer created to print experimental materials, test multi-axis print techniques, and quickly print large objects. The printer consists of a 7-axis robotic arm and pellet extruder, which are controlled by a PC. Experimental materials such as recycled polymers or carbon-fiber reinforced materials can be easily tested with the pellet format of the extruder. The printer can perform different printing techniques and can be used to experiment with material properties when using these techniques with different polymers. The print surface is around 5 times larger than the average commercial 3D printer, and the robotic arm provides …

Basins Of Attraction And Metaoptimization For Particle Swarm Optimization Methods, David Ma

Honors Projects

Particle swarm optimization (PSO) is a metaheuristic optimization method that finds near- optima by spawning particles which explore within a given search space while exploiting the best candidate solutions of the swarm. PSO algorithms emulate the behavior of, say, a flock of birds or a school of fish, and encapsulate the randomness that is present in natural processes. In this paper, we discuss different initialization schemes and meta-optimizations for PSO, its performances on various multi-minima functions, and the unique intricacies and obstacles that the method faces when attempting to produce images for basins of attraction, which are the sets of …

Problems In Chemical Graph Theory Related To The Merrifield-Simmons And Hosoya Topological Indices, William B. O'Reilly

Electronic Theses and Dissertations

In some sense, chemical graph theory applies graph theory to various physical sciences. This interdisciplinary field has significant applications to structure property relationships, as well as mathematical modeling. In particular, we focus on two important indices widely used in chemical graph theory, the Merrifield-Simmons index and Hosoya index. The Merrifield-Simmons index and the Hosoya index are two well-known topological indices used in mathematical chemistry for characterizing specific properties of chemical compounds. Substantial research has been done on the two indices in terms of enumerative problems and extremal questions. In this thesis, we survey known extremal results and consider the generalized …

A Comparative Analysis Of A Family Of Advanced Iterative Optimization Methods In Nonlinear Regression, Tanmoy Kumar Debnath

Electronic Theses and Dissertations

Classical statistical supervised learning optimization techniques like the Gauss-Newton Iterative Method (GNIM), Weighted Gauss-Newton Iterative Method (WGNIM), Reweighted Gauss-Newton Iterative Method (RGNIM), and Levenberg-Marquart (LM) algorithm extend the nonlinear least squares method. The WGNIM improves model fitting by controlling heteroscedasticity in the linear and nonlinear models. A comparative analysis of the GNIM, WGNIM, RGNIM, and LM methods for fitting nonlinear models is presented. A step-wise diagnosis for structural multicollinearity in the reweighted linearized model is investigated via the Variance Inflation Factor (VIF) to determine variance inflation in the sequence of estimators for the model parameters. Under restricted multicollinearity levels in …

Mathematical Modeling Of Coupled Heat And Mass Transfer In Metal-Hydride Hydrogen Storage Systems, Muhammad Hasnain

Electronic Theses and Dissertations

As a promising clean energy carrier hydrogen has recently gained significant interest, but its efficient and safe storage is a major challenge. Compared to the gaseous state and liquid state, metal hydrides (MH) offer a potentially more effective storage approach for hydrogen. However, the main challenge in this approach is the low thermal conductivity of the MH bed that leads to low heat transfer and ultimately to higher charging and discharging times. The purpose of this work is to develop an in-house comprehensive heat and mass transfer model for hydrogen sorption in MH reactors to simulate the dynamic behavior of …

Uniform Regularity Estimates For The Stokes System In Perforated Domains, Jamison R. Wallace

Theses and Dissertations--Mathematics

We consider the Stokes equations in an unbounded domain $\omega_{\epsilon,\eta}$ perforated by small obstacles, where $\epsilon$ represents the minimal distance between obstacles and $\eta$ is the ratio between the obstacle size and $\epsilon$. We are able to obtain uniform $W^{1,q}$ estimates for solutions to the Stokes equations in such domains with bounding constants depending explicitly on $\epsilon$ and $\eta$.

Mathematical Modeling And Analysis Of Inflammation And Tissue Repair: Lung Inflammation And Wound Healing In Corals Under Stress, Quintessa Hay

Theses and Dissertations

A variety of insults, including tissue injury and/or exposure to pathogen, elicit an immune response in many organisms. An improperly regulated immune response can result in deleterious effects to the organism. Here we present models for lung injury in young and old mice and models for wound healing in coral reefs.

It is well known that the immune response becomes less effective in older individuals. This is of particular interest in pulmonary insults such as ventilator induced lung injury (VILI) or lung infection. We extended a mathematical model for the inflammatory response to VILI and used experimental data to select …

A Novel Scheme Based On Bessel Operational Matrices For Solving A Class Of Nonlinear Systems Of Differential Equations, Atallah El-Shenawy, Mohamed El-Gamel, Muhammad E. Anany

Mansoura Engineering Journal

The system of ordinary differential equations arises in many natural phenomena, especially in the field of disease spread. In this paper, a perfect spectral technique is introduced to solve systems of nonlinear differential equations. The technique enhanced the Bessel collocation technique by converting the series notation of unknown variables and their derivatives to matrix relations. The Newton algorithm is developed to solve the resulting nonlinear system of algebraic equations. The effectiveness of the scheme is proved by the convergence analysis and error bound as demonstrated in Theorem 1. The scheme of solution is tested to clarify the efficiency and the …

Using Fibonacci Sequence In Nature, Muhammad Hassan Hamid Al-Sultani

Al-Qadisiyah Journal of Pure Science

In this work, primarily focuses of the Fibonacci sequence(FS) by compute each number(N) is the total of the two preceding numbers. The quantities(N) that are associated with the Fibonacci sequence(FS) are referred to as Fibonacci numbers(FN), which are typically written as Fn. The order(S)commonly starts from 0 and 1,and presented formula for Fibonacci sequence(FS) , understand Fibonacci numbers(FN) through solved various examples. Moreover introduced connection between the Fibonacci sequence(FS) and Golden Ratio (GR),relation between Fibonacci sequence(FS) and Geometric Sequence(GS) and so comparison between Lucas Sequence And (FS).Also give applied Fibonacci sequence(FS)in nature.

Mathematical Analysis Of Eukaryotic Pericentromere, Puranjan Ghimire

Theses and Dissertations

The centromere is crucial for chromosomal stability and their proper segregation during cell division in eukaryotes. Surrounding the centromere are pericentromeres, made of repetitive DNA elements called pericentromeric repeats, varying from 10 in fission yeast to thousands in humans. These repeats form densely packed heterochromatin, where genes are usually silenced. The silencing mechanism across different pericentromeric repeats remains unclear.

Despite variations in sequence and length, pericentromeric repeats are conserved across eukaryotes, indicating their functional importance. This dissertation presents mathematical models to quantify gene silencing in fission yeast and humans. In fission yeast, my model predicts that silencing occurs only with …

Bringing Gans To Medieval Times: Manuscript Translation Models, Tonilynn M. Holtz

Electronic Theses and Dissertations

The Generative Adversarial Networks (GAN) recently emerged as a powerful framework for producing new knowledge from existing knowledge. These models aim to learn patterns from input data then use that knowledge to generate output data samples that plausibly appear to belong to the same set as the input data. Medieval manuscripts study has been an important research area in the humanities field for many decades. These rare manuscripts are often times inaccessible to the general public, including students in scholars, and it is of a great interest to provide digital support (including, but not limited to translation and search) for …

Simulation Of Wave Propagation In Granular Particles Using A Discrete Element Model, Syed Tahmid Hussan

Electronic Theses and Dissertations

The understanding of Bender Element mechanism and utilization of Particle Flow Code (PFC) to simulate the seismic wave behavior is important to test the dynamic behavior of soil particles. Both discrete and finite element methods can be used to simulate wave behavior. However, Discrete Element Method (DEM) is mostly suitable, as the micro scaled soil particle cannot be fully considered as continuous specimen like a piece of rod or aluminum. Recently DEM has been widely used to study mechanical properties of soils at particle level considering the particles as balls. This study represents a comparative analysis of Voigt and Best …

Probing The Ising Model’S Thermodynamics Through Restricted Boltzmann Machines, Xiaobei (Emma) Zhang

HMC Senior Theses

This thesis explores the connection between physics and machine learning by using Restricted Boltzmann Machines (RBMs) to study the thermodynamic properties of the Ising model. The Ising model is a simple but realistic model that captures the magnetic behavior of a system, where spins occupy a lattice of sites and different spin configurations correspond to different energies. The model exhibits phase transitions between ferromagnetic and paramagnetic phases as a function of temperature. RBMs are two-layered neural networks that can learn probability distributions over binary spins. The study generates 2D Ising model data at different temperatures using Monte Carlo simulations, including …

Exploring Sigmoidal Bounded Confidence Models With Mean Field Methods, Tian Dong

HMC Senior Theses

Mathematicians use models of opinion dynamics to describe how opinions in a group of people change over time, which can yield insight into mechanisms behind phenomena like polarization and consensus. In these models, mathematicians represent the community as a graph, where nodes represent agents and edges represent possible interactions. Opinion updates are modeled with a system of differential equations (ODEs). Our work focuses on the sigmoidal bounded confidence model (SBCM), where agents update their opinion toward a weighted average of their neighbors' opinions by weighting similar opinions more heavily. Using tools developed in physics (mean-field theory), we derive a continuity …

Les-C Turbulence Models And Fluid Flow Modeling: Analysis And Application To Incompressible Turbulence And Fluid-Fluid Interaction, Kyle J. Schwiebert

Dissertations, Master's Theses and Master's Reports

In the first chapter of this dissertation, we give some background on the Navier-Stokes equations and turbulence modeling. The next two chapters in this dissertation focus on two important numerical difficulties arising in fluid flow modeling: poor mass-conservation and nonphysical oscillations. We investigate two different formulations of the Crank-Nicolson method for the Navier-Stokes equations. The most attractive implementation, second order accurate for both velocity and pressure, is shown to introduce non-physical oscillations. We then propose two options which are shown to avoid the poor behavior. Next, we show that grad-div stabilization, previously assumed to have no effect on the target …

Data Driven And Machine Learning Based Modeling And Predictive Control Of Combustion At Reactivity Controlled Compression Ignition Engines, Behrouz Khoshbakht Irdmousa

Dissertations, Master's Theses and Master's Reports

Reactivity Controlled Compression Ignition (RCCI) engines operates has capacity to provide higher thermal efficiency, lower particular matter (PM), and lower oxides of nitrogen (NOx) emissions compared to conventional diesel combustion (CDC) operation. Achieving these benefits is difficult since real-time optimal control of RCCI engines is challenging during transient operation. To overcome these challenges, data-driven machine learning based control-oriented models are developed in this study. These models are developed based on Linear Parameter-Varying (LPV) modeling approach and input-output based Kernelized Canonical Correlation Analysis (KCCA) approach. The developed dynamic models are used to predict combustion timing (CA50), indicated mean effective pressure (IMEP), …

Quantification Of Antiviral Drug Tenofovir (Tfv) By Surface-Enhanced Raman Spectroscopy (Sers) Using Cumulative Distribution Functions (Cdfs), Marguerite R. Butler, Jana Hrncirova, Meredith Clark, Sucharita Dutta, John B. Cooper

Chemistry & Biochemistry Faculty Publications

Surface-enhanced Raman spectroscopy (SERS) is an ultrasensitive spectroscopic technique that generates signal-enhanced fingerprint vibrational spectra of small molecules. However, without rigorous control of SERS substrate active sites, geometry, surface area, or surface functionality, SERS is notoriously irreproducible, complicating the consistent quantitative analysis of small molecules. While evaporatively prepared samples yield significant SERS enhancement resulting in lower detection limits, the distribution of these enhancements along the SERS surface is inherently stochastic. Acquiring spatially resolved SERS spectra of these dried surfaces, we have shown that this enhancement is governed by a power law as a function of analyte concentration. Consequently, by definition, …

An Unsupervised Machine Learning Algorithm For Clustering Low Dimensional Data Points In Euclidean Grid Space, Josef Lazar

Senior Projects Spring 2024

Clustering algorithms provide a useful method for classifying data. The majority of well known clustering algorithms are designed to find globular clusters, however this is not always desirable. In this senior project I present a new clustering algorithm, GBCN (Grid Box Clustering with Noise), which applies a box grid to points in Euclidean space to identify areas of high point density. Points within the grid space that are in adjacent boxes are classified into the same cluster. Conversely, if a path from one point to another can only be completed by traversing an empty grid box, then they are classified …

Determination Of Spore Viability In Concrete Across Several Factors Using Most Probable Number, Samuel Boyer

Williams Honors College, Honors Research Projects

To determine the lowest concentration of spore added to polyurethane-cement composite (PUCCO) particles that can still germinate after curing in concrete. This research project is a small addition to the larger research project being undertaken by Mirza Mohammed Rashiduzzaman for his Masters. The larger project involves the use of fungal spores added in concrete to act as a self-healing component when cracks form in the concrete structure over time. These spores are suspended in a protective oil and loaded into small, hardened sponge-like PUCCO cubes to act as growth points when water and air can reach the PUCCO in the …