Physical Sciences and Mathematics Commons^™

The Kinetics Of Type I Interferons During Influenza Virus Infection, Margaret A. Myers

Biology and Medicine Through Mathematics Conference

No abstract provided.

Mathematical Modeling Of Normal And Abnormal Responses To The Valsalva Maneuver, Eric Benjamin Randall

Biology and Medicine Through Mathematics Conference

No abstract provided.

Dynamics Of Fluorescent Imaging In Glob-Driven Breakup, Lan Zhong, Christiaan Ketelaar, Richard J. Braun, Carolyn G. Begley, Peter Ewen King-Smith

Biology and Medicine Through Mathematics Conference

No abstract provided.

Control Policies And Sensitivity Analysis In A Cutaneous Leishmaniasis Model: A Case Study In Cusco Region, Peru., Rocio M. Caja-Rivera, Ignacio Barradas

Biology and Medicine Through Mathematics Conference

No abstract provided.

Building And Validating A Model For Investigating The Dynamics Of Isolated Water Molecules, Grant Cates

Senior Theses

Understanding how water molecules behave in isolation is vital to understand many fundamental processes in nature. To that end, scientists have begun studying crystals in which single water molecules become trapped in regularly occurring cavities in the crystal structure. As part of that investigation, numerical models used to investigate the dynamics of isolated water molecules are sought to help bolster our fundamental understanding of how these systems behave. To that end, the efficacy of three computational methods—the Euler Method, the Euler-Aspel Method and the Beeman Method—is compared using a newly defined parameter, called the predictive stability coefficient ρ. This …

Role Of The Cost Of Plasticity In Determining The Features Of Fast Vision In Humans., Maria M. Del Viva Phd, Renato Budinich M. Sc, Laura Palmieri M. Sc, Vladimir S Georgiev Phd, Giovanni Punzi Phd

MODVIS Workshop

No abstract provided.

Tropical Algebra, Graph Theory, & Foreign Exchange Arbitrage, Bradley A. Mason

Senior Honors Projects, 2010-2019

We answer the question, given n currencies and k trades, how can a maximal arbitrage opportunity be found and what is its value? To answer this question, we use techniques from graph theory and employ a max-plus algebra (commonly known as tropical algebra). Further, we show how the tropical eigenvalue of a foreign exchange rate matrix relates to arbitrage among the currencies and can be found algorithmically. We finish by employing time series techniques to study the stability of maximal, high-currency arbitrage opportunities.

Comparison Of The Regulatory Dynamics Of Related Small Gene Regulatory Networks That Control The Response To Cold Shock In Saccharomyces Cerevisiae, Natalie Williams

Honors Thesis

The Dahlquist Lab investigates the global, transcriptional response of Sacchromyces cerevisiae, baker’s yeast, to the environmental stress of cold shock, using DNA microarrays for the wild type strain and strains deleted for a particular regulatory transcription factor. Gene regulatory networks (GRNs) consist of transcription factors (TF), genes, and the regulatory connections between them that control the resulting mRNA and protein expression levels. We use mathematical modeling to determine the dynamics of the GRN controlling the cold shock response to determine the relative influence of each transcription factor in the network. A family of GRNs has been derived from the …

Jet-Hadron Correlations Relative To The Event Plane Pb--Pb Collisions At The Lhc In Alice, Joel Anthony Mazer

Doctoral Dissertations

In relativistic heavy ion collisions at the Large Hadron Collider (LHC), a hot, dense and strongly interacting medium known as the Quark Gluon Plasma (QGP) is produced. Quarks and gluons from incoming nuclei collide to produce partons at high momenta early in the collisions. By fragmenting into collimated sprays of hadrons, these partons form 'jets'. Within the framework of perturbative Quantum Chromodynamics (pQCD), jet production is well understood in pp collisions. We can use jets measured in pp interactions as a baseline reference for comparing to heavy ion collision systems to detect and study jet quenching. The jet quenching mechanism …

Analysis Of A Market For Tradable Credits, Policy Uncertainty Effects On Investment Decisions, And The Potential To Supply A Renewable Aviation Fuel Industry With An Experimental Industrial Oilseed, Evan Lawrence Markel

Doctoral Dissertations

This research is aligned with identifying barriers throughout the alternative jet-fuel supply chain. Prices are analyzed in the market for tradable credits known as renewable identification numbers (RINs). The RIN market is a key policy instrument used in the implementation of the renewable fuel standard (RFS). The program is highly complex and drivers of RIN price are not always clear. RIN prices also exhibit multiple regimes where the price of nested RINs converge. Therefore, a smooth transition autoregressive model is employed to examine drivers of RIN price and to identify drivers of price regime change. Through research in the RIN …

Shortest Path Problem On Single Valued Neutrosophic Graphs, Florentin Smarandache, Said Broumi, Mohamed Talea, Assia Bakali, Kishore Kumar

Branch Mathematics and Statistics Faculty and Staff Publications

A single valued neutrosophic graph is a generalized structure of fuzzy graph, intuitionistic fuzzy graph that gives more precision, flexibility and compatibility to a system when compared with systems that are designed using fuzzy graphs and intuitionistic fuzzy graphs. This paper addresses for the first time, the shortest path in an acyclic neutrosophic directed graph using ranking function. Here each edge length is assigned to single valued neutrosophic numbers instead of a real number. The neutrosophic number is able to represent the indeterminacy in the edge (arc) costs of neutrosophic graph. A proposed algorithm gives the shortest path and shortest …

Detecting Finite Flat Dimension Of Modules Via Iterates Of The Frobenius Endomorphism, Douglas J. Dailey, Srikanth B. Iyengar, Thomas Marley

Department of Mathematics: Faculty Publications

It is proved that a module M over a Noetherian ring R of positive characteristic p has finite flat dimension if there exists an integer t > 0 such that Tor R (M, fe R) = 0 for t < i< t + dim R and infinitely many e. This extends results of Herzog, who proved it when M is finitely generated. It is also proved that when R is a Cohen-Macaulay local ring, it suffices that the Tor vanishing holds for one e > logp e(R) is the multiplicity of R.

Differentiating Between A Protein And Its Decoy Using Nested Graph Models And Weighted Graph Theoretical Invariants, Hannah E. Green

Electronic Theses and Dissertations

To determine the function of a protein, we must know its 3-dimensional structure, which can be difficult to ascertain. Currently, predictive models are used to determine the structure of a protein from its sequence, but these models do not always predict the correct structure. To this end we use a nested graph model along with weighted invariants to minimize the errors and improve the accuracy of a predictive model to determine if we have the correct structure for a protein.

Optimal Control Of Energy Production In A Market With Emission Allowances, Leonhard Kunczik

Theses and Dissertations

With a growing awareness for preserving the environment, governments started to regulate the greenhouse gas emissions of energy producers by implementing markets for CO2 allowances. Such markets can be found in the European Union with the Emission Trading

Scheme (EU ETS). The CO2 emission permit trading is one approach to provide incentives to the power firms to reduce their CO2 emission.

This thesis proposes two models for an optimal control of the energy production rate depending on the energy unit price as well as on the trading of emission derivatives. One model aims to maximize the wealth of the power …

Mathematical Modeling Of Financial Derivative Pricing, Kelly L. Cosgrove

Honors Scholar Theses

The binomial asset-pricing model is used to price financial derivative securities. This text will begin by going over the probability concepts necessary to understand this discrete-time model. It then develops the theory behind the binomial model and different properties that arise. It shows how to use the binomial model to predict future stock prices, and then uses this information to price derivative securities. It initially focuses on the European call option, but goes on to provide a pricing method for the American put option. However, many of the theorems developed are applicable to all derivative securities. The text wraps up …

Quantifying The Structure Of Misfolded Proteins Using Graph Theory, Walter G. Witt

Electronic Theses and Dissertations

The structure of a protein molecule is highly correlated to its function. Some diseases such as cystic fibrosis are the result of a change in the structure of a protein so that this change interferes or inhibits its function. Often these changes in structure are caused by a misfolding of the protein molecule. To assist computational biologists, there is a database of proteins together with their misfolded versions, called decoys, that can be used to test the accuracy of protein structure prediction algorithms. In our work we use a nested graph model to quantify a selected set of proteins that …

Krylov Subspace Spectral Methods For Pdes In Polar And Cylindrical Geometries, Megan Richardson

Dissertations

As a result of stiff systems of ODEs, difficulties arise when using time stepping methods for PDEs. Krylov subspace spectral (KSS) methods get around the difficulties caused by stiffness by computing each component of the solution independently. In this dissertation, we extend the KSS method to a circular domain using polar coordinates. In addition to using these coordinates, we will approximate the solution using Legendre polynomials instead of Fourier basis functions. We will also compare KSS methods on a time-independent PDE to other iterative methods. Then we will shift our focus to three families of orthogonal polynomials on the interval …

Accuracy And Stability Of Integration Methods For Neutrino Transport In Core Collapse Supernovae, Kyle A. Gregory

Chancellor’s Honors Program Projects

No abstract provided.

Application Of Symplectic Integration On A Dynamical System, William Frazier

Electronic Theses and Dissertations

Molecular Dynamics (MD) is the numerical simulation of a large system of interacting molecules, and one of the key components of a MD simulation is the numerical estimation of the solutions to a system of nonlinear differential equations. Such systems are very sensitive to discretization and round-off error, and correspondingly, standard techniques such as Runge-Kutta methods can lead to poor results. However, MD systems are conservative, which means that we can use Hamiltonian mechanics and symplectic transformations (also known as canonical transformations) in analyzing and approximating solutions. This is standard in MD applications, leading to numerical techniques known as symplectic …

Inventory Optimization Using A Simpy Simulation Model, Lauren Holden

Electronic Theses and Dissertations

Existing multi-echelon inventory optimization models and formulas were studied to get an understanding of how safety stock levels are determined. Because of the restrictive distribution assumptions of the existing safety stock formula, which are not necessarily realistic in practice, a method to analyze the performance of this formula in a more realistic setting was desired. A SimPy simulation model was designed and implemented for a simple two-stage supply chain as a way to test the performance of the safety stock formula. This implementation produced results which led to the conclusion that the safety stock formula tends to underestimate the level …

A Stochastic Model For Water-Vegetation Systems And The Effect Of Decreasing Precipitation On Semi-Arid Environments, Shannon A. Dixon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Current climate change trends are affecting the magnitude and recurrence of extreme weather events. In particular, several semi-arid regions around the planet are confronting more intense and prolonged lack of precipitation, slowly transforming these regions into deserts. Many mathematical models have been developed for purposes of analyzing vegetation-water interactions, particularly in semi-arid landscapes. Most models are based on the average behavior of the system as a whole, and how it is influenced by external changes. These models may be termed "macro-scale" models. Other models have concerned themselves with the interactions between individuals, in this case the interactions between individual plants …

Initial{Boundary And Nonlocal Boundary Value Problems For Higher Order Nonlinear Hyperbolic Equations With Two Independent Variables, Raja Ben-Rabha

Theses and Dissertations

Boundary value problems in a characteristic rectangle for nonlinear hyperbolic equations of higher order are considered. The concept of strong well–posedness of a boundary value problem is introduced. For initial–boundary value problems there are established: (i) Necessary and sufficient conditions of strong well–posedness; (ii) Unimprovable sufficient conditions of local and global solvability; (iii) Effective sufficient conditions of solvability of two–point, multi–point, periodic and Dirichlet type problems; (iv) Sharp a priori estimates of solutions of ill–posed initial–boundary value problems; (v) Unimprovable conditions guaranteeing unique solvability of ill–posed initial–boundary value problems. For nonlocal boundary value problems there are established: (i) Necessary and …

Electrodynamical Modeling For Light Transport Simulation, Michael G. Saunders

Undergraduate Honors Theses

Modernity in the computer graphics community is characterized by a burgeoning interest in physically based rendering techniques. That is to say that mathematical reasoning from first principles is widely preferred to ad hoc, approximate reasoning in blind pursuit of photorealism. Thereby, the purpose of our research is to investigate the efficacy of explicit electrodynamical modeling by means of the generalized Jones vector given by Azzam [1] and the generalized Jones matrix given by Ortega-Quijano & Arce-Diego [2] in the context of stochastic light transport simulation for computer graphics. To augment the status quo path tracing framework with such a modeling …

Surface Energy In Bond-Counting Models On Bravais And Non-Bravais Lattices, Tim Ryan Krumwiede

Doctoral Dissertations

Continuum models in computational material science require the choice of a surface energy function, based on properties of the material of interest. This work shows how to use atomistic bond-counting models and crystal geometry to inform this choice. We will examine some of the difficulties that arise in the comparison between these models due to differing types of truncation. New crystal geometry methods are required when considering materials with non-Bravais lattice structure, resulting in a multi-valued surface energy. These methods will then be presented in the context of the two-dimensional material graphene in a way that correctly predicts its equilibrium …

3-Manifold Perspective On Surface Homeomorphisms For Surfaces With Very Negative Euler Characteristic, Michael Harris

Graduate Theses and Dissertations

The goal of this paper is to show for a compact triangulated 3-manifold M with boundary which fibers over the circle that whenever F is a fiber with sufficiently negative Euler characteristic the monodromymaps an essential simple closed curve or an essential simple arc in F to be disjoint from its image (possibly after isotopy). This is shown by applying the theorem of Ichihara, Kobayashi, and Rieck in [10] to the double of M to get a pair of pants. We then find an equivariant pair of pants and use it to find an essential simple closed curve or an …

Solving The Yang-Baxter Matrix Equation, Mallory O. Jennings

Honors Theses

The Yang-Baxter equation is one that has been widely used and studied in areas such as statistical mechanics, braid groups, knot theory, and quantum mechanics. While many sets of solutions have been found for this equation, it is still an open problem. In this project, I solve the Yang-Baxter matrix equation that is similar in format to the Yang-Baxter equation. I try to solve the corresponding Yang-Baxter matrix equation, ������=������, where X is an unknown ������ matrix, and ��=[0����0] or [0−��−��0], by using the Jordan canonical form to find infinitely many solutions.

Efficient Denoising And Sharpening Of Color Images Through Numerical Solution Of Nonlinear Diffusion Equations, Linh T. Duong

Honors Theses

The purpose of this project is to enhance color images through denoising and sharpening, two important branches of image processing, by mathematically modeling the images. Modifications are made to two existing nonlinear diffusion image processing models to adapt them to color images. This is done by treating the red, green, and blue (RGB) channels of color images independently, contrary to the conventional idea that the channels should not be treated independently. A new numerical method is needed to solve our models for high resolution images since current methods are impractical. To produce an efficient method, the solution is represented as …

Diffusive Logistic Equations With Harvesting And Heterogeneity Under Strong Growth Rate, Saeed Shabani Rokn-E-Vafa, Hossein T. Tehrani

Mathematical Sciences Faculty Research

We consider the equation −Δu=au−b(x)u2−ch(x) in Ω,u=0 on ∂Ω, where Ω is a smooth bounded domain in RN, b(x) and h(x) are nonnegative functions, and there exists Ω0⊂⊂Ω such that {x:b(x)=0}=Ω¯¯¯0. We investigate the existence of positive solutions of this equation for c large under the strong growth rate assumption a≥λ1(Ω0), where λ1(Ω0) is the first eigenvalue of the −Δ in Ω0 with Dirichlet boundary condition. We show that if h≡0 in Ω∖Ω¯¯¯0, then our equation has a unique positive solution for all c large, provided that a is in a right neighborhood of λ1(Ω0). For this purpose, we prove …

Optimal Experimental Design To Characterize A Wave Source Using Dosimeter Measurements, Renee L. Gooding

Mathematics & Statistics ETDs

When modeling physical phenomena we want to solve the inverse problem by estimating the parameters that characterize the source model that we are interested in. In this thesis, we focus on the optimal placement of a finite number of individual sensors, called dosimeters, in two and three dimensions with a time dependent Gaussian wave source. Using a computational model along with experimental data, we design an iterative process to determine the optimal placement of an additional sensor such that the noise in the measurements has a minimal effect on the parameter estimation. First, we estimate the parameters that characterize the …

Deterministic And Probabilistic Methods For Seismic Source Inversion, Juan Pablo Madrigal Cianci

Mathematics & Statistics ETDs

The national Earthquake Information Center (NEIC) reports an occurrence of about 13,000 earthquakes every year, spanning different values on the Richter scale from very mild (2) to "giant earthquakes'' (8 and above). Being able to study these earthquakes provides useful information for a wide range of applications in geophysics. In the present work we study the characteristics of an earthquake by performing seismic source inversion; a mathematical problem that, given some recorded data, produces a set of parameters that when used as input in a mathematical model for the earthquake generates synthetic data that closely resembles the measured data. There …