Physical Sciences and Mathematics Commons^™

Social Aggregation In Pea Aphids: Experiment And Random Walk Modeling, Christa Nilsen, John Paige, Olivia Warner, Benjamin Mayhew, Ryan Sutley, Matthew Lam '15, Andrew J. Bernoff, Chad M. Topaz

All HMC Faculty Publications and Research

From bird flocks to fish schools and ungulate herds to insect swarms, social biological aggregations are found across the natural world. An ongoing challenge in the mathematical modeling of aggregations is to strengthen the connection between models and biological data by quantifying the rules that individuals follow. We model aggregation of the pea aphid, Acyrthosiphon pisum. Specifically, we conduct experiments to track the motion of aphids walking in a featureless circular arena in order to deduce individual-level rules. We observe that each aphid transitions stochastically between a moving and a stationary state. Moving aphids follow a correlated random walk. …

The Machete Number, David Freund

Senior Independent Study Theses

Knot theory is a branch of topology that deals with the structure and properties of links. Employing a variety of tools, including surfaces, graph theory, and polynomials, we develop and explore classical link invariants. From this foundation, we de fine two novel link invariants, braid height and machete number, and investigate their properties and connection to classical invariants.

New Microarray Image Segmentation Using Segmentation Based Contours Method, Yuan Cheng

Doctoral Dissertations

The goal of the research developed in this dissertation is to develop a more accurate segmentation method for Affymetrix microarray images. The Affymetrix microarray biotechnologies have become increasingly important in the biomedical research field. Affymetrix microarray images are widely used in disease diagnostics and disease control. They are capable of monitoring the expression levels of thousands of genes simultaneously. Hence, scientists can get a deep understanding on genomic regulation, interaction and expression by using such tools.

We also introduce a novel Affymetrix microarray image simulation model and how the Affymetrix microarray image is simulated by using this model. This simulation …

Global Attracting Equilibria For Coupled Systems With Ceiling Density Dependence, Eric A. Eager, Mary Hebert, Elise Hellwig, Francisco Hernandez, Richard Rebarber, Brigitte Tenhumberg, Bryan Wigianto

School of Biological Sciences: Faculty Publications

In this paper, we present a system of two difference equations modeling the dynamics of a coupled population with two patches. Each patch can house only a limited number of individuals (called a carrying capacity) because resources like food and breeding sites are limited in each patch. We assume that the population in each patch is governed by a linear model until reaching a carrying capacity in each patch, resulting in map which is nonlinear and not sublinear. We analyze the global attractors of this model.

Fuzzy Neutrosophic Models For Social Scientists, Florentin Smarandache, W.B. Vasantha Kandasamy

Branch Mathematics and Statistics Faculty and Staff Publications

In this book, authors give the notion of different neutrosophic models like, neutrosophic cognitive maps (NCMs), neutrosophic relational maps (NEMs), neutrosophic relational equations (NREs), neutrosophic bidirectional associative memories (NBAMs) and neutrosophic associative memories (NAMs) for socio scientists. This book has six chapters. The first chapter introduces the basic concepts of neutrosophic numbers and notions about neutrosophic graphs which are essential to construct these neutrosophic models. In chapter two we describe the concept of neutrosophic matrices and the essential operations related with them which are used in the study and working of these neutrosophic models. However the reader must be familiar …

Nonlocal Aggregation Models: A Primer Of Swarm Equilibria, Andrew J. Bernoff, Chad M. Topaz

All HMC Faculty Publications and Research

Biological aggregations such as fish schools, bird flocks, bacterial colonies, and insect swarms have characteristic morphologies governed by the group members' intrinsic social interactions with each other and by their interactions with the external environment. Starting from a simple discrete model treating individual organisms as point particles, we derive a nonlocal partial differential equation describing the evolving population density of a continuum aggregation. To study equilibria and their stability, we use tools from the calculus of variations. In one spatial dimension, and for several choices of social forces, external forces, and domains, we find exact analytical expressions for the equilibria. …

Existence And Qualitative Properties Of Solutions For Nonlinear Dirichlet Problems, Alfonso Castro, Jorge Cossio, Carlos Vélez

All HMC Faculty Publications and Research

Sign-changing solutions to semilinear elliptic problems in connection with their Morse indices. To this end, we first establish a priori bounds for one-sign solutions. Secondly, using abstract saddle point principles we find large augmented Morse index solutions. In this part, extensive use is made of critical groups, Morse index arguments, Lyapunov-Schmidt reduction, and Leray-Schauder degree. Finally, we provide conditions under which these solutions necessarily change sign and we comment about further qualitative properties.

Near-Optimal Compressed Sensing Guarantees For Anisotropic And Isotropic Total Variation Minimization, Deanna Needell, Rachel Ward

CMC Faculty Publications and Research

Consider the problem of reconstructing a multidimensional signal from partial information, as in the setting of compressed sensing. Without any additional assumptions, this problem is ill-posed. However, for signals such as natural images or movies, the minimal total variation estimate consistent with the measurements often produces a good approximation to the underlying signal, even if the number of measurements is far smaller than the ambient dimensionality. Recently, guarantees for two-dimensional images were established. This paper extends these theoretical results to signals of arbitrary dimension and to both the anisotropic and isotropic total variation problems. To be precise, we show that …

Integrable Systems As Fluid Models With Physical Applications, Tony Lyons

Doctoral

In this thesis we begin with the development and analysis of hydrodynamical models as they arise in the theory of water waves and in the modelling of blood flow within arteries. Initially we derive three models of hydrodynamical relevance, namely the KdV equation, the two component Camassa-Holm equation and the Kaup-Boussinesq equation. We develop a model of blood flowing within an artery with elastic walls, and from the principles of Newtonian mechanics we derive the two-component Burger's equation as our first integrable model. We investigate the analytic properties of the system briefly, with the aim of demonstrating the phenomenon of …

Generalized Analytic Fourier-Feynman Transform Of Functionals In A Banach Algebra F_(A1,A2)^(A,B), Jae Gil Choi, David Skough, Seung Jun Chang

Department of Mathematics: Faculty Publications

We introduce the Fresnel type class F_(A1,A2)^(a,b).We also establish the existence of the generalized analytic Fourier-Feynman transform for functionals in the Banach algebra F_(A1,A2)^(a,b).

Time-Stepping For Laser Ablation, Harihar Khanal, David Autrique, Vasilios Alexiades

Publications

Nanosecond laser ablation is a popular technique, applied in many areas of science and technology such as medicine, archaeology, chemistry, environmental and materials sciences. We outline a computational model for radiative and collisional processes occurring during ns-laser ablation, and compare the performance of various low and high order time-stepping algorithms.

Hydrodynamic Modeling Of Ns-Laser Ablation, David Autrique, Vasilios Alexiades, Harihar Khanal

Publications

Laser ablation is a versatile and widespread technique, applied in an increasing number of medical, industrial and analytical applications. A hydrodynamic multiphase model describing nanosecond-laser ablation (ns- LA) is outlined. The model accounts for target heating and mass removal mechanisms as well as plume expansion and plasma formation. A copper target is placed in an ambient environment consisting of helium and irradiated by a nanosecond-laser pulse. The effect of variable laser settings on the ablation process is explored in 1-D numerical simulations.

Reduced-Order Modeling Using Orthogonal And Bi-Orthogonal Wavelet Transforms, Miguel Hernandez Iv

Open Access Theses & Dissertations

It is well known that model reduction methods borrow techniques typically found in data compression, and current state-of-the-art techniques for data compression are based on the wavelet transform. Given these facts, it is surprising that model reduction using wavelets has not received much attention and has not been adequately addressed in the literature. This research seeks to determine if wavelets can be used for model reduction and if wavelet model reduction is a viable alternative to existing model reduction methods.

In this work we propose a novel method for model reduction using wavelets. Specifically, we introduce techniques for deriving wavelet …

A Block Operator Splitting Method For Heterogeneous Multiscale Poroelasticity, Paul M. Delgado

Open Access Theses & Dissertations

Traditional models of poroelastic deformation in porous media assume relatively homogeneous material properties such that macroscopic constitutive relations lead to accurate results. Many realistic applications involve heterogeneous material properties whose oscillatory nature require multiscale methods to balance accuracy and efficiency in computation.

The current study develops a multiscale method for poroelastic deformation based on a fixed point iteration based operator splitting method and a heterogeneous multiscale method using finite volume and direct stiffness methods. To characterize the convergence

of the operator splitting method, we use a numerical root finding algorithm to determine a threshold surface in a non-dimensional parameter space …

Stability Of Large Flocks: An Example, J. J. P. Veerman, F. M. Tangerman

Mathematics and Statistics Faculty Publications and Presentations

The movement of a flock with a single leader (and a directed path from it to every agent) can be stabilized. Nonetheless for large flocks perturbations in the movement of the leader may grow to a considerable size as they propagate throughout the flock and before they die out over time. As an example we consider a string of N+1 oscillators moving in the line. Each one `observes' the relative velocity and position of only its nearest neighbors. This information is then used to determine its own acceleration. Now we fix all parameters except the number of oscillators. We then …

Clustering Methods And Their Applications To Adolescent Healthcare Data, Morgan Mayer-Jochimsen

Scripps Senior Theses

Clustering is a mathematical method of data analysis which identifies trends in data by efficiently separating data into a specified number of clusters so is incredibly useful and widely applicable for questions of interrelatedness of data. Two methods of clustering are considered here. K-means clustering defines clusters in relation to the centroid, or center, of a cluster. Spectral clustering establishes connections between all of the data points to be clustered, then eliminates those connections that link dissimilar points. This is represented as an eigenvector problem where the solution is given by the eigenvectors of the Normalized Graph Laplacian. Spectral clustering …

The Truth About Lie Symmetries: Solving Differential Equations With Symmetry Methods, Ruth A. Steinhour

Senior Independent Study Theses

Differential equations are vitally important in numerous scientific fields. Oftentimes, they are quite challenging to solve. This Independent Study examines one method for solving differential equations. Norwegian mathematician Sophus Lie developed this method, which uses groups of symmetries, called Lie groups. These symmetries map one solution curve to another. They can be used to determine a canonical coordinate system for a given differential equation. Writing the differential equation in terms of a different coordinate system can make the equation simpler to solve. This I.S. explores techniques for finding a canonical coordinate system and using it to solve a given differential …

Subset Non Associative Semirings, Florentin Smarandache, W.B. Vasantha Kandasamy

Branch Mathematics and Statistics Faculty and Staff Publications

In this book for the first time we introduce the notion of subset non associative semirings. It is pertinent to keep on record that study of non associative semirings is meager and books on this specific topic is still rare. Authors have recently introduced the notion of subset algebraic structures. The maximum algebraic structure enjoyed by subsets with two binary operations is just a semifield and semiring, even if a ring or a field is used. In case semigroups or groups are used still the algebraic structure of the subset is only a semigroup. To construct a subset non associative …

Calcium Concentration Fluctuations And Subspace Volume Influence Calcium-Regulated Calcium Channel Gating And Subspace Dynamics, Seth H. Weinberg, Gregory D. Smith

Arts & Sciences Articles

No abstract provided.

Algebraic Structures Using Subsets, Florentin Smarandache, W.B Vasantha Kandasamy

Branch Mathematics and Statistics Faculty and Staff Publications

The study of subsets and giving algebraic structure to these subsets of a set started in the mid 18th century by George Boole. The first systematic presentation of Boolean algebra emerged in 1860s in papers written by William Jevons and Charles Sanders Peirce. Thus we see if P(X) denotes the collection of all subsets of the set X, then P(X) under the op erations of union and intersection is a Boolean algebra. Next the subsets of a set was used in the construction of topological spaces. We in this book consider subsets of a semigroup or a group or a …

Mathematical Modeling And Analysis Of Asthma Stability And Severity, Arezoo Hanifi

Electronic Theses and Dissertations

Asthma is one of the most common chronic conditions in the United States. Asthma affects about one in fifteen people. It affects children more than adults and blacks more than whites. People with asthma experience attacks of wheezing, breathlessness, chest tightness, and coughing. Asthma can be fatal and the costs for the disease (direct and indirect) are approximated to be tens of billions of dollars each year.

There is no cure for asthma. However; for most people if asthma is controlled well they can lead normal, active lives. Therefore asthma controllability is a main factor in clinical practice. In order …

A Superposed Log-Linear Failure Intensity Model For Repairable Artillery Systems, Byeong Min Mun, Suk Joo Bae, Paul Kvam

Department of Math & Statistics Faculty Publications

This article investigates complex repairable artillery systems that include several failure modes. We derive a superposed process based on a mixture of nonhomogeneous Poisson processes in a minimal repair model. This allows for a bathtub-shaped failure intensity that models artillery data better than currently used methods. The method of maximum likelihood is used to estimate model parameters and construct confidence intervals for the cumulative intensity of the superposed process. Finally, we propose an optimal maintenance policy for repairable systems with bathtub-shaped intensity and apply it to the artillery-failure data.

A Study Of Nonlinear Dynamics In Mathematical Biology, Joseph Ferrara

UNF Graduate Theses and Dissertations

We first discuss some fundamental results such as equilibria, linearization, and stability of nonlinear dynamical systems arising in mathematical modeling. Next we study the dynamics in planar systems such as limit cycles, the Poincaré-Bendixson theorem, and some of its useful consequences. We then study the interaction between two and three different cell populations, and perform stability and bifurcation analysis on the systems. We also analyze the impact of immunotherapy on the tumor cell population numerically.

Let's Get In The Mood: An Exploration Of Data Mining Techniques To Predict Mood Based On Musical Properties Of Songs, Sarah Smith-Polderman

Senior Independent Study Theses

This thesis explores the possibility of predicting the mood a song will evoke in a person based on certain musical properties that the song exhibits. First, I introduce the topic of data mining and establish its significant relevance in this day and age. Next, I explore the several tasks that data mining can accomplish, and I identify classification and clustering as the two most relevant tasks for mood prediction based on musical properties of songs. Chapter 3 introduces in detail two specific classification techniques: Naive Bayes Classification and k-Nearest Neighbor Classification. Similarly, Chapter 4 introduces two specific clustering techniques: …

A Population Density Domain Model For Calcium-Inactivation Of L-Type Calcium Channels, Kiah Hardcastle, Seth H. Weinberg, Gregory D. Smith

Arts & Sciences Articles

No abstract provided.

Modeling The Human Gait Phases Using Granular Computing, Melaku Ayenew Bogale

Open Access Theses & Dissertations

Gait analysis is applied for the provision of diagnosis, evaluation, and for the design of therapeutic intervention for subjects suffering from neurological disorders. The benefits accruing from gait analysis are well established. People with neurological disorders like mild traumatic brain injury, Cerebral Palsy and Multiple Sclerosis, suffer associated functional gait problems. The symptoms and sign of these gait deficits are different from subject to subject and even for the same subject at different stage of the disease. Identifying these gait related abnormalities helps in the treatment planning and rehabilitation process.

The dynamic behavior of gait parameters is cyclic and the …

Post-Pareto Optimality Methods For The Analysis Of Large Pareto Sets In Multi-Objective Optimization, Victor Manuel Carrillo

Open Access Theses & Dissertations

Multiple objective optimization involves the simultaneous optimization of more than one, possibly conflicting, objectives. Multiple objective optimization problems arise in a variety of real-world applications. In general, the main difference between single and multi-objective optimization is that in multi-objective optimization there is usually no single optimal solution, but a set of equally good alternatives with different trade-offs, also known as Pareto-optimal solutions. There are two general approaches to solve multiple objective optimization problems: mathematical methods and meta-heuristic methods. The first approach involves the aggregation of the attributes into a linear combination of the objective functions, also known as scalarization. The …

Lattice Boltzmann Simulations Of Thermal Convective Flows In Two Dimensions, Jia Wang, Donghai Wang, Pierre Lallemand, Li-Shi Luo

Mathematics & Statistics Faculty Publications

In this paper we study the lattice Boltzmann equation (LBE) with multiple-relaxation-time (MRT) collision model for incompressible thermo-hydrodynamics with the Boussinesq approximation. We use the MRT thermal LBE (TLBE) to simulate the following two flows in two dimensions: the square cavity with differentially heated vertical walls and the Rayleigh-Benard convection in a rectangle heated from below. For the square cavity, the flow parameters in this study are the Rayleigh number Ra = 10³-10⁶, and the Prandtl number Pr = 0.71; and for the Rayleigh-Benard convection in a rectangle, Ra = 2 ^. 10³, 10 …

Pressure Poisson Method For The Incompressible Navier-Stokes Equations Using Galerkin Finite Elements, John Cornthwaite

Electronic Theses and Dissertations

In this thesis we examine the Navier-Stokes equations (NSE) with the continuity equation replaced by a pressure Poisson equation (PPE). Appropriate boundary conditions are developed for the PPE, which allow for a fully decoupled numerical scheme to recover the pressure. The variational form of the NSE with PPE is derived and used in the Galerkin Finite Element discretization. The Galerkin finite element method is then used to solve the NSE with PPE. Moderate accuracy is shown.

The Lismullin Enclosure:A Designed Ritual Space, Frank Prendergast

Book/Book Chapter

The discovery in 2007 of a prehistoric post-built enclosure at Lismullin, Co. Meath, during archaeological investigations in advance of the construction of the M3 motorway is, arguably, the most significant Irish archaeological discovery of recent times. This appendix summarises a commissioned specialist report on the spatial and archaeoastronomical features of the enclosure.