Physical Sciences and Mathematics Commons^™

Multithreaded Applications On The Heterogeneous Research Computing Environment., Sungbo Jung

Electronic Theses and Dissertations

Bioinformatics is a domain that has experienced rapid research growth in recent years, as evidenced by the increasing number of articles in biomedical databases such as PubMed, which adds over a million publications every year. However, this also poses a challenge for researchers who need to find relevant citations for their work. Therefore, developing efficient indexing and searching methods for text data is crucial for Bioinformatics. One key technique for information retrieval is document inversion, which involves creating an inverted index to enable efficient searching through vast collections of text or documents. This Ph.D. research aims to design the research …

Grey Relational Analysis And Canonical Correlation Analysis Of Air Pollution In Three Kentucky Counties, Sarah Hartman

Masters Theses & Specialist Projects

Air pollution is a crucial factor that affects both the environment and public health. Various methods are available for assessing air quality and pollution levels, such as regression models, principal component analysis, and factor analysis tools. However, some of these methods present issues in multicollinearity and the nature of collected data. It is important to recognize that air pollution data is often uncertain, incomplete, and contains limited valid data points. Weather conditions and economic activities are also factors that can affect air pollution. With growing communities in Kentucky (KY), it is essential to address these factors as the state has …

Survival Of Methanogens Desiccated On Mars Soil Simulants: Implications For Life On Mars, Lanee Knight

Biological Sciences Undergraduate Honors Theses

Because of Mars’s chemical features, it can be studied in the search for life and is a significant figure in the study of astrobiology (McKay, 2010). Dr. Kral’s laboratory studies methanogens, microorganisms in the domain Archaea, as possible life forms on Mars. Since some methanogens can withstand harsh environmental conditions and emit methane as a waste product, the growth of these microorganisms can be used as an indicator of potential life in the Mars subsurface (Kral et al., 1998). In this research, four methanogens, Methanothermobacter wolfeii, Methanobacterium formicicum, Methanosarcina barkeri, and Methanococcus maripaludi were desiccated in the …

Development Of An Enhanced Sampling Workflow To Accelerate Molecular Docking With Sparse Biophysical Information, Zachary Stichter

Masters Theses & Specialist Projects

Rapid docking of flexible biological macromolecules remains a significant open challenge in protein structure determination. While rigid docking is relatively simple with toolkits such as TagDock, a key obstacle to rapid flexible docking is the complexity and roughness of the free energy surface associated with protein conformational motion (often termed the many-minima problem), meaning conventional molecular dynamics methods do not effectively sample protein conformations near the interaction complex in accessible timescales. Methods such as metadynamics and replica exchange molecular dynamics exist to ameliorate this obstacle, yet these methods use nonphysical biases or random swaps to enhance sampling. In contrast, high …

Synthesis Of Gold Nanoparticles Via Pulsed Liquid Ablation For Use In The Photodynamic Therapy Of Bacteria, Justice Ben Yosef

Masters Theses & Specialist Projects

With the ever-increasing threat of antibiotic resistant bacteria, alternative treatment methods have been developed including photodynamic therapy (PDT). Within the PDT process, photosensitizers are used to generate reactive oxygen species (ROS) and facilitate the cell termination process. This work lays the conceptual foundation for the functionalization of the photosensitizer methylene blue (MB) with gold nanoparticles (AuNPs) and INF-55 as a potential inhibitor of the AcrAB-TolC efflux pump to enhance the effectivity of the PDT process.

AuNPs were synthesized using pulsed laser ablation in an aqueous citrate solution. Both nanosecond and picosecond pulse durations, as well as both 532 nm and …

Which Vole Is Which: Dna-Based Species Identification For Wisconsin’S Three Microtus Species, Madeline Noel Opie

Theses and Dissertations

Accurate species identification is necessary to implement conservation strategies in the wild. When traditional morphology-based species identification is challenging due to phenotypic plasticity, overlapping characteristics, or the species are otherwise cryptic, DNA-based species identification may be more suitable. Of the three species of Microtus in Wisconsin, two are listed as threatened at the state level. Both M. ochrogaster and M. pinetorum have stable population levels at the national level but are along the northern edge of their ranges in Wisconsin. Small and vulnerable populations of M. ochrogaster and M. pinetorum are limited to isolated patches in the southwestern portion of …

Agricultural Groundcover Update March 2024, Justin Laycock

Natural resources published reports

• In March, over 10% (1,577,000 ha) of the arable farmland in the south-west of Western Australia had less than 50% vegetative groundcover, which is inadequate to prevent wind erosion.

• The northern grainbelt had the highest risk of wind erosion and over 20% of this farmland had inadequate groundcover.

• About 1.3% (191,000 ha) of arable land had a high to very high risk of wind erosion because groundcover was less than 30%.

The Conservation Project: An Exploration Of Multimedia In Ocean Conservation, Ilaria Bardini

Honors College

The Conservation Project ties in many elements of multimedia and its possible applications in marine conservation. The purpose of this thesis was to develop new skills in videography, photography, podcast production, and website development through which to deepen my understanding of the multimedia as a tool in science, through the development of a website.

Understanding The Connection Between Water, Fish, And Pfas Concentrations: Implications Of Fish Diet And Species-Specific Variability, Ece Yeldan

Honors College

Perfluoroalkyl and polyfluoroalkyl substances, commonly known as PFAS or “forever chemicals,” have emerged as a significant concern for both human health and the environment. These persistent compounds permeate various aspects of commerce, leading to widespread exposure and the cycling of these compounds through environmental feedback routes. Among the sources of exposure to humans, fish consumption stands out prominently. Recreational and sustenance fishing, cherished by Maine residents and indigenous communities alike, underscores the need to comprehend PFAS dynamics in fish and water. To explore the variability of PFAS accumulation in fish, water, and sediment, I conducted a comprehensive literature review. The …

Assessing The Influence Of Interseeded Cover Crops On Beneficial Arthropod Abundance In A Northeastern Agroecosystem, Charles Cooper

Honors College

Conservation agriculture approaches are gaining traction as the planet’s food system grapples with climate change, oil depletion, and rampant environmental degradation (Palm et al., 2014). Cover cropping is an integral practice of conservation agriculture. Ground dwelling arthropods play an important role in agroecosystems, providing ecosystem services including seed predation and nutrient cycling. Because the relationship between cover crops and arthropod abundance are likely influenced by management conditions, I investigated arthropod abundance in a field interseeded with cover crops on a research farm in Maine, United States. Interseeding is an emerging practice in the northeastern United States, with potential to address …

Ecological Effects And Ethics Of A Species Range Shift To High Elevation Ponds, Ava Ardito

Honors College

As temperatures warm, the climate crisis is having a significant influence on species across the world and altering their distributions. Colorado's high elevation ponds have recently observed a species range shift, traveling to higher altitudes than they have previously inhabited. The Mexican Cut Nature Preserve near the Rocky Mountain Biological Laboratory (RMBL) in Gothic, CO, is home to a prominent caddisfly Limnephilus externus, but recently a new range-shifting species, Nemotaulius hostilis, has appeared. Caddisflies play an essential role in nutrient cycling and putting energy back into the food web. The range-shifting species is known to excrete high rates of phosphorus …

Analysis Of Nonsmooth Neural Mass Models, Cadi Howell

Honors College

Neural activity in the brain involves a series of action potentials that represent “all or nothing” impulses. This implies the action potential will only “fire” if the mem- brane potential is at or above a specific threshold. The Wilson-Cowan neural mass model [6, 28] is a popular mathematical model in neuroscience that groups excita- tory and inhibitory neural populations and models their communication. Within the model, the on/off behavior of the firing rate is typically modeled by a smooth sigmoid curve. However, a piecewise-linear (PWL) firing rate function has been considered in the Wilson-Cowan model in the literature (e.g., see …

Physical Forcing Of Productivity, Biomass, And Demography Of Ascophyllum Nodosum, Henry Guy

Honors College

The intertidal coastlines of Maine are dominated by a near monoculture of Ascophyllum nodosum. This species of macroalgae is foundational to the ecosystems in which it inhabits, so what controls the Ascophyllum nodosum controls the coasts. A. nodosum has been documented as a steady-state species in terms of biomass, canopy height, and primary productivity. Algal biomass results from algal recruitment, primary productivity (growth rate), and environmental disturbance (rate of biomass loss). My study estimated the abiotic disturbance of the environment on biotic factors ofAscophyllum nodosum. Physical forcings of the environment, ice, water motion, and light, drive Ascophyllum nodosum abundance, distribution, …

Sustainable Fertilizer Management Practices For Container Nursery Production, Saroj Burlakoti

All Graduate Theses and Dissertations, Fall 2023 to Present

Growing nursery plants in containers requires a timely supply of mineral nutrients for optimum growth. However, there is a misconception among growers that the application of higher doses of fertilizers hastens plant growth; instead, it can lead to runoff and leaching loss of nutrients. Reducing fertilizer application while sustaining healthy plants can not only negate environmental consequences but also save fertilizer costs. For example, two ground covers, Lysimachia nummularia (creeping jenny, moneywort) and Vinca minor 'Bowles' (periwinkle), can be grown for three months by applying 6 mg/L of phosphorus (P) as reduction of P to single application of 6 mg/L …

Influence Of The Atlantic Inflow On Trace Metal Enrichments In Sediments And Particulate Matter Of The Nw Alboran Sea (Sw Mediterranean), Albert Palanques, Pere Puig, Pere Masqué, Enrique Isla

Research outputs 2022 to 2026

Trace metal contents and fluxes in downward particulate matter and dated sediment cores of the NW Alboran Sea are analysed in this study with the aim of assessing the role of the Atlantic inflow on their transport. Increases in Zn, Cu and Pb were detected in downward particulate matter collected by sediment traps after river flooding events and after the Aznalcollar mining spill. Their arrival coincided within the recently estimated time range for river particles discharged into the Gulf of Cádiz to reach the Alboran Sea, indicating that their transfer is enhanced during events of increased river inputs of contaminated …

Agriculture 4.0 And Beyond: Evaluating Cyber Threat Intelligence Sources And Techniques In Smart Farming Ecosystems, Hang T. Bui, Hamed Aboutorab, Arash Mahboubi, Yansong Gao, Nazatul H. Sultan, Aufeef Chauhan, Mohammad Z. Parvez, Michael Bewong, Rafiqul Islam, Zahid Islam, Seyit A. Camtepe, Praveen Gauravaram, Dineshkumar Singh, M. A. Babar, Shihao Yan

Research outputs 2022 to 2026

The digitisation of agriculture, integral to Agriculture 4.0, has brought significant benefits while simultaneously escalating cybersecurity risks. With the rapid adoption of smart farming technologies and infrastructure, the agricultural sector has become an attractive target for cyberattacks. This paper presents a systematic literature review that assesses the applicability of existing cyber threat intelligence (CTI) techniques within smart farming infrastructures (SFIs). We develop a comprehensive taxonomy of CTI techniques and sources, specifically tailored to the SFI context, addressing the unique cyber threat challenges in this domain. A crucial finding of our review is the identified need for a virtual Chief Information …

Assessing Equitable Distribution Of The Urban Tree Canopy At The Neighborhood Scale In Greenville, South Carolina., April Riehm

All Theses

We are living in an era that necessitates adaptation and resilience. The Earth is warming. Our climate has changed (EPA, 2016). Our planet is also rapidly urbanizing. It is predicted that 68% of people will live in cities by 2050. The City of Greenville is a rapidly growing city in South Carolina that has been losing its tree canopy to development(City of Greenville, 2023). The Urban Tree Canopy (UTC) is a community asset that provides many quality-of-life benefits including improved air quality, stormwater management, carbon sequestration, mental and physical well-being, increased mobility and access, aesthetics, a reduction in energy costs, …

Photobiomodulation Of Bovine Oocytes During Maturation Increases Atp Content And Enhances Subsequent Embryonic Development, Kendall Richey

All Theses

Bovine in-vitro production(IVP) of embryos is a growing field for producing offspring with desirable genetics in the cattle industries. While IVP is effective, oocyte cytoplasmic maturation is compromised, and bovine oocytes matured in-vitro have reduced metabolic activity than those matured in-vivo. Mitochondria are the central unit of oocyte metabolism, producing ATP through OXPHOS. Photobiomodulation is a light treatment reported to improve metabolic activity. In five experiments, we measured the effects of photobiomodulation treatment with red LED at 16-(L-16) and 20 h(L-20) of bovine oocyte in-vitro maturation on subsequent embryonic development, mitochondrial activity and nuclear progression. Bovine COCs were aspirated …

Plant-Plant Interaction In Early- Vs. Late-Successional Varieties Of The Hawaiian Landscape-Dominant Tree, Metrosideros Polymorpha, Tomoko Sakishima

UNLV Theses, Dissertations, Professional Papers, and Capstones

Plant-plant interactions play an important role in assembling plant communities. Interactions between neighboring plants can vary as a result of the genetic relatedness of neighbors, impacting rates of growth and patterns of resource allocation. When growing alongside close relatives, some species decrease their growth in a form of cooperation, while others grow faster through facilitation. A complication of plant interaction studies arises because decreased growth in the presence of close relatives can also be due to competition for resources, which increases with phenotypic similarity. Further complicating matters, mycorrhizal fungi, through their connections with plant roots, may strongly influence plant interactions. …

Understanding Stress And Coping Among Adults In The United States During The Covid-19 Pandemic, Jocy-Anna Chevalier

UNLV Theses, Dissertations, Professional Papers, and Capstones

Since the COVID-19 pandemic started, individuals in the United States (U.S.) and across the globe have experienced unprecedented levels of stress. The purpose of this study is to understand the stress experienced among adults in the U.S. and which coping processes affect their overall emotional well-being. Guided by Lazarus and Folkman’s (1987) Transactional Model of Stress and Coping (TMSC), this study conducted a secondary data analysis (n=404) of adults across the U.S who completed an online survey examining their experiences with stress and coping. A Pearson correlation was utilized to explore the relationship between stress and depressive symptoms. Paired samples …

Winter Roost Selection Of Eastern Red Bats And Impacts Of Non-Growing Season Prescribed Fire On Foraging Activity Of Forest Roosting Bats In Tennessee, Ashley D. Epstein

Masters Theses

With an increase in wind energy development and continued deforestation and habitat degradation, eastern red bats (Lasiurus borealis; LABO) and other migratory foliage roosting bats (hoary bat [Lasiurus cinereus; LACI], silver-haired bat [Lasionycteris noctivagans; LANO]) are at risk of severe population declines, potentially leading to the need for protection under the Endangered Species Act. While studies have been done examining the ecology of these species, there is still a lack of research on winter roosting and foraging behaviors. This research aims to fill some of those knowledge gaps by 1) Examining roost use (i.e., trees vs. litter) …

Skimming Genomes For Systematics And Dna Barcodes Of Corals, Andrea M. Quattrini, Luke J. Mccartin, Erin E. Easton, Jeremy Horowitz, Herman H. Wirshing, Hailey Bowers, Kenneth Mitchell, María Del P. González-García, Makiri Sei, Catherine S. Mcfadden

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Numerous genomic methods developed over the past two decades have enabled the discovery and extraction of orthologous loci to help resolve phylogenetic relationships across various taxa and scales. Genome skimming (or low-coverage genome sequencing) is a promising method to not only extract high-copy loci but also 100s to 1000s of phylogenetically informative nuclear loci (e.g., ultraconserved elements [UCEs] and exons) from contemporary and museum samples. The subphylum Anthozoa, including important ecosystem engineers (e.g., stony corals, black corals, anemones, and octocorals) in the marine environment, is in critical need of phylogenetic resolution and thus might benefit from a genome-skimming approach. We …

Year-Round Co2 Emissions From The Drawdown Area Of A Tropical Reservoir: Strong Seasonal And Spatial Variation, Ícaro Barbosa, José R. Paranaíba, Sebastian Sobek, Sarian Kosten, Rafael M. Almeida, Vitor Duque, Natália Mendonça, Nathan Barros, Raquel Mendonça

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Highlights

• Drawdown areas emitted 80% of reservoir CO2 with just 1/5 area.

• Emissions from reservoir shorelines near forests were greater than from areas near grassland.

• CO2 emissions increase with the distance from the water.

• Estimates of reservoir drawdown CO2 flux vary by ∼ 300 % across the seasons examined here.

• There was no discernible difference in CO2 emissions between day and night-time.

• A significant increase in CO2 fluxes was observed 30 min after a rewetting event.

Abstract

A growing body of literature points to drawdown areas as important sources of atmospheric CO2 within reservoirs. Yet seasonal and temporal patterns of …

Spatial Ecology Of Mule Deer Migrations From Grand Teton National Park And The Teton Range, Justin K. Schwabedissen

All Graduate Theses and Dissertations, Fall 2023 to Present

The Greater Yellowstone Ecosystem hosts several of the longest, fully intact ungulate migrations remaining in the continental United States. However, expanding development and an increasing human footprint continue to truncate migratory routes. While the endpoints are often a seasonal range on protected lands, these migration corridors frequently cross other jurisdictional boundaries, including large tracts of private or multiple-use lands, with varying levels of protection. Thus, it is critical resource managers understand the dynamics of migratory movements to define population-level corridors and prioritize appropriate conservation strategies. Mule deer in Wyoming have been documented traveling long distances between summer and winter ranges; …

A Comparative Analysis Of Field Electron Emission From Carbon Black Embedded Within Insulated Copper Hollowed Wires And Glass Tubes, Hatem A. Al-Braikat, Ahmad M D Jaber, Adel M. Abuamr, Mazen A. Madanat, Aseel A. Al-Jbarart, M-Ali H. Al-Akhras, Marwan S. Mousa

Karbala International Journal of Modern Science

In this study, two different methods are used to investigate carbon black as a cold field electron emitter. The first method is to incorporate carbon black into a specially designed insulated copper hollowed wire. The wire has a cup-shaped structure created by electrochemical etching. The second method involves the incorporation of carbon black into narrow glass tubes. A Comparative analyses is carried out to evaluate the effectiveness of each method. To evaluate the performance of the samples, the current-voltage characteristics will be examined using field electron microscopes. This analysis will provide an understanding of the emission of the carbon black …

Philosophy In Science: Can Philosophers Of Science Permeate Through Science And Produce Scientific Knowledge?, Thomas Pradeu, Maël Lemoine, Mahdi Khelfaoui, Yves Gingras

Presidential Fellows Articles and Research

Most philosophers of science do philosophy ‘on’ science. By contrast, others do philosophy ‘in’ science (PinS), that is, they use philosophical tools to address scientific problems and to provide scientifically useful proposals. Here, we consider the evidence in favour of a trend of this nature. We proceed in two stages. First, we identify relevant authors and articles empirically with bibliometric tools, given that PinS would be likely to infiltrate science and thus to be published in scientific journals (‘intervention’), cited in scientific journals (‘visibility’), and sometimes recognized as a scientific result by scientists (‘contribution’). We show that many central figures …

Learning To Teach About Climate Justice And Social Justice In Science Methods, Mindy J. Chappell

Northwest Journal of Teacher Education

In November, the Editors of NWJTE sat down for a conversation with Dr. Mindy J. Chappell, a Science Teacher Educator in the College of Education at Portland State University. Dr. Chappell’s passions include developing teachers who are prepared to disrupt normative science ideologies and provide young people with science instruction that encourages and empowers them to be leaders in their communities. She engages in arts-based educational science research through the methodology of Ethnodance (a term she coined). She places young people and their lived experiences at the heart of her work.

Feminist Political Ecology In The Classroom, Ella J. Yeigh

Northwest Journal of Teacher Education

As the effects of climate change are being felt more frequently, discussions on how to combat such a massive issue are increasingly prevalent. Finding solutions to the climate crisis requires an understanding of how mainstream economic systems have led to the climate crisis and using these same principles to get out of the climate crisis is misguided. Economic actions have inherent value biases that have real political effects. Feminist Political Ecology (FPE) as a theoretical model presents a better understanding of how values that are inherent in economic models such as reliance on efficiency, markets, and continual economic growth have …

Supporting Text And Data Analysis Across Campus From The Academic Library, Amy Kirchhoff, Hejin Shin Phd

Digital Initiatives Symposium

The ability to comprehend and communicate with text-based data is essential to future success in academics and employment, as evidenced in a recent survey from Bloomberg Research Services which shows that nearly 97% of survey respondents now use data analytics in their companies and 58% consider data and text mining a business analytics tool (https://www.sas.com/content/dam/SAS/bp_de/doc/studie/ba-st-the-current-state-of-business-analytics-2317022.pdf). This has fueled a substantial growth in text analysis research (involving the use of technology to analyze un- and semi-structured text data for valuable insights, trends, and patterns) across disciplines and a corresponding demand on academic libraries to support text analysis pedagogy and text analysis …

04-29-2024 Orsp Newsletter, Liz Williamson

ORSP Newsletter

Locating ORSP training in Blackboard, Marta Panickar, MS Aerospace and Defense Symposium, NSF Common Forms in SciENcv