Physical Sciences and Mathematics Commons^™

Monarch Butterfly (Danaus Plexippus) Oviposition Preferences And A Survey Of Fungal Pathogens On Native Milkweeds (Asclepias) Of The Northern Great Plains, Grace Damiano

Electronic Theses and Dissertations

North American monarch butterfly (Danaus plexippus) populations are experiencing significant declines due to habitat loss caused by land use changes. Much of the American Midwest where milkweed, the only host plant of the monarch butterfly, was once much more abundant has been converted to a predominantly agricultural landscape. There are nineteen species of milkweed native to the northern Great Plains region occupied by South Dakota, North Dakota, and Minnesota. Some of these milkweed species may be preferable to monarch butterflies for different reasons, including morphological factors such as stem length, species-level chemical factors, and temporal factors. As monarch …

Nitrogen Uptake Rates And Phytoplankton Composition Across Contrasting North Atlantic Ocean Coastal Regimes North And South Of Cape Hatteras, Yifan Zhu, Margaret R. Mulholland, Peter W. Bernhardt, Aimee Renee Neeley, Brittany Widner, Alfonso Macías Tapia, Michael E. Echevarria

OES Faculty Publications

Understanding nitrogen (N) uptake rates respect to nutrient availability and the biogeography of phytoplankton communities is crucial for untangling the complexities of marine ecosystems and the physical, biological, and chemical forces shaping them. In the summer of 2016, we conducted measurements of bulk microbial uptake rates for six ¹⁵N-labeled substrates: nitrate, nitrite, ammonium, urea, cyanate, and dissolve free amino acids across distinct marine provinces, including the continental shelf of the Mid-and South Atlantic Bights (MAB and SAB), the Slope Sea, and the Gulf Stream, marking the first instance of simultaneously measuring six different N uptake rates in this dynamic region. …

Wild Sun Bears (Helarctos Malayanus) Exhibit Aseasonality In Parturition, Zachary A. David, Brian Crudge, Matt Hunt, Kirsty Officer, Vuthy Choun, Barbara Durrant, Megan A. Owen, Morokot Long, John P. Whiteman

Biological Sciences Faculty Publications

Seasonal reproduction can provide species with fitness advantages by allowing the birth of young to coincide with favorable environmental conditions, particularly in environments with high seasonal and intra-annual variation in these conditions. Seven of the eight species in the bear family (Ursidae) reproduce seasonally in both managed care and the wild; however, data for the eighth species, the sun bear (Helarctos malayanus), is unclear. Sun bears have been observed to reproduce throughout the year in managed care, yet currently there are no clear data of birth timing for wild sun bear cubs. Here we investigate the seasonality of …

Bidirectional In-Situ Analysis And Visualization Of Fluid Structure Interactions With Applications In Blood Flow, Nazariy Tishchenko

Graduate Research Theses & Dissertations

Interactive blood flow simulation has applications in the understanding of complex fluids,training medical professionals, diagnostics, and surgical procedure planning. Bidirectional in situ visualization and analysis are much needed to streamline the analysis of large-scale patient-specific blood flow simulations. The in situ component ensures the live visualization of the simulation results while the simulation is running, and the bidirectional component allows for real-time control and configuration of the simulation parameters (i.e., setting and retrieving the simulation parameters and data based on need). In this project, a highly accurate multiphysics simulation was instrumented to work with an existing bidirectional in situ framework. …

On The Ground And From Above: A Multi-Factor Analysis Of The Direct And Indirect Drivers Of Tallgrass Prairie Small Mammal Communities, Erin Rowland-Schaefer

Graduate Research Theses & Dissertations

Tallgrass prairies are among the most globally threatened ecosystems, with only one percent of the historical extent remaining in Illinois. Prairie restoration is an essential strategy to preserve biodiversity and reestablish threatened species. Practitioners use management tools to shift the landscape context of prairie restoration sites, such as prescribed fire and land cover change. Managers can also impact the landscape connectivity and edge proximity of certain areas through the use of mowed driving lanes. The effects of these factors on small mammals, which are central in tallgrass prairie food webs and relevant to human health and restoration success, are not …

Hunting Types In North American Eocene And Oligocene Carnivores And Implications For Nimravid Extinction, Miguel Andres Castellanos

Graduate Research Theses & Dissertations

The late Eocene and Oligocene is traditionally seen as a time of great climactic shift, with open habitats beginning to appear and forests receding. This time period saw both the diversification and subsequent extinction of North American nimravids. The causes of the extinction of this early sabertooth group in the Arikareean remain unclear. One possibility for their decline is that nimravids were competitively disadvantaged in open habitats relative to contemporary, possibly more cursorial caniform predators. Here I analyze and compare the hunting styles of Eocene and Oligocene predators in correlation with their ecological implications via discriminant function analysis of the …

Pathology And Diagnosis In Inflammatory-Related Diseases: Covid-19 And Age-Related Macular Degeneration, Zane Russell Lacasse

Graduate Research Theses & Dissertations

Chronic inflammation and dysfunctional inflammatory responses are believed to be contributing factors to the severity of many diseases. Since the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), it has been recognized that levels of inflammatory markers and the severity of coronavirus disease-2019 (COVID-19) cases are closely related. The work within this dissertation begins with establishing an alternative platform for the diagnosis of COVID-19 and explores ways to enhance the diagnostic utility of this platform. An alternative route for COVID-19 diagnosis was explored using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF MS). The platform utilizes a non-invasive sampling technique …

Ms Environmental Biology Capstone Project, Klaudia Sowizral

Regis University Student Publications (comprehensive collection)

Thelephorales fungi are considered important ectomycorrhizal fungi (EMF) in forest ecosystems, yet the patterns of diversity and distribution and the processes that shape them remain poorly understood. This study aims to address this research gap by conducting an exploratory analysis of Thelephorales fungi in soil and litter across various habitat types and environmental characteristics. To do so, we used data collected and synthesized by the Climush project, a multi-year, systematic sampling of macrofungal diversity across North America, that aims to assess sexual (sporocarp and spore trap data) and asexual (soil and endophyte metabarcode data) diversity and distribution in relation to …

The Impacts Of Anthropogenic Activity And Climate Change On The Formation Of Harmful Algal Blooms (Habs) And Its Ecological Consequence, Zhangxi Hu, Aifeng Li, Zhun Li, Margaret R. Mulholland

OES Faculty Publications

No abstract provided.

Managing Inter-Organizational Trust And Risk Perceptions In Transboundary Fisheries Governance Networks, Evelyn Roozee, Dongkyu Kim, Antonia Sohns, Jasper R. De Vries, Owen Temby, Gordon M. Hickey

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Transboundary fishery management represents a significant governance challenge that requires ongoing inter-organizational communication, collaboration, and collective action to ensure sustainability. Previous research suggests that different dimensions of perceived risk, trust, and control interact in complex ways to affect inter-organizational collaborative performance, providing an administrative ‘architecture’ that enables partners to share resources, engage in teamwork, resolve conflict, and coordinate tasks and responsibilities while also allaying their concerns about the alliance. However, the extent to which different control mechanisms influence trust and mitigate the perceived risks of collaboration between the diverse organizations involved in transboundary fisheries management remains unclear. This paper presents …

Disaster Plant Pathology: Smart Solutions For Threats To Global Plant Health From Natural And Human-Driven Disasters, Berea A. Etherton, Robin A. Choudhury, Ricardo I. Alcalá Briseño, Romaric A. Mouafo-Tchinda, Aaron I. Plex Sulá, Manoj Choudhury, Ashish Adhikari, Si Lin Lei, Nattapol Kraisitudomsook, Jacobo Robledo Buritica

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Disaster plant pathology addresses how natural and human-driven disasters impact plant diseases, and the requirements for smart management solutions. Local to global drivers of plant disease change in response to disasters, often creating environments more conducive to plant disease. Most disasters have indirect effects on plant health through factors such as disrupted supply chains and damaged infrastructure. There is also the potential for direct effects from disasters, such as pathogen or vector dispersal due to floods, hurricanes, and human migration driven by war. Pulse stressors such as hurricanes and war require rapid responses, while press stressors such as climate change …

Mangroves Of The Warm Temperate Northwest Atlantic, Daniel A. Friess, Ena L. Suárez, Anna R. Armitage, Cheryl Doughty, Laura C. Feher, Ilka C. Feller, Alejandro Fierro, Kara R. Radabaugh, Lorae T. Simpson, William C. V Vervaeke, Carlos Zamora-Tovar

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The ‘Mangroves of the Warm Temperate Northwest Atlantic’ province is a regional ecosystem subgroup (level 4 unit of the IUCN Global Ecosystem Typology). It includes the marine ecoregions of Carolinian and Northern Gulf of Mexico. The biota is characterized by 3 species of mangroves: Avicennia germinans, Laguncularia racemosa, and Rhizophora mangle, and 1 mangrove associate Conocarpus erectus, though not all species are equally distributed throughout the province. Mangroves in this province cross the USA and Mexico and are quite unique, as they exist at the latitudinal range limit of the mangrove ecosystem. The majority of mangroves in this province are …

Integrating Remote Sensing With Ground-Based Observations To Quantify The Effects Of An Extreme Freeze Event On Black Mangroves (Avicennia Germinans) At The Landscape Scale, Melinda Martinez, Michael J. Osland, James B. Grace, Nicholas M. Enwright, Camille L. Stagg, Camille L. Stagg, Simen Kaalstad, Gordon H. Anderson, Elena A. Flores, Alejandro Fierro-Cabo

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Climate change is altering the frequency and intensity of extreme weather events. Quantifying ecosystem responses to extreme events at the landscape scale is critical for understanding and responding to climate-driven change but is constrained by limited data availability. Here, we integrated remote sensing with ground-based observations to quantify landscape-scale vegetation damage from an extreme climatic event. We used ground- and satellite-based black mangrove (Avicennia germinans) leaf damage data from the northern Gulf of Mexico (USA and Mexico) to examine the effects of an extreme freeze in a region where black mangroves are expanding their range. The February 2021 …

Western Boundary Current-Subtropical Continental Shelf Interactions, William B. Savidge, Dana K. Savidge, Frederico Brandini, Adam T. Greer, Eileen E. Hofmann, Moninya Roughan, Iison De Silvera, Iain M. Suthers

CCPO Publications

Western boundary currents (WBCs) adjacent to subtropical continental shelves (STCSs; between ~25° and 35° latitude; Figure 1) transport heat, nutrients, and biota poleward along the western margins of major ocean basins, interacting with the continental margins and influencing their physics and biology. Eddies and meanders along the shelf edge upwell deep, nutrient-laden water that can be advected onto the adjacent shelves with a corresponding export of particle-rich shelf water (e.g., Lee et al., 1991; Kimura et al., 1997; Campos et al., 2000; Roughan and Middleton, 2002, 2004; Lutjeharms, 2006; Savidge and Savidge, 2014). Despite their similarities, the various STCS regions …

Weed Seed Wizard Case Study - Grower From Western Australia’S Central Wheatbelt, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity research reports

The Weed Seed Wizard is a national collaborative project that uses paddock management information to predict weed emergence and crop losses now and in the future.

The Weed Seed Wizard is a computer simulation tool that:

• applies to all Australian grain growing areas

• helps growers understand and manage weed seedbanks on their farms

• uses farm management records to simulate how different crop rotations, weed control techniques, irrigation, grazing and harvest management tactics can affect weed numbers, the weed seedbank and yields

• uses farm-specific management and site-specific weather

• is multi-species

See www.dpird.wa.gov.au for further information on Weed Seed Wizard.

This case …

Weed Seed Wizard Case Study - Don't Stop Harvest Weed Management Because It’S A Dry Year, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity research reports

The Weed Seed Wizard is a national collaborative project that uses paddock management information to predict weed emergence and crop losses now and in the future.

The Weed Seed Wizard is a computer simulation tool that:

• applies to all Australian grain growing areas

• helps growers understand and manage weed seedbanks on their farms

• uses farm management records to simulate how different crop rotations, weed control techniques, irrigation, grazing and harvest management tactics can affect weed numbers, the weed seedbank and yields

• uses farm-specific management and site-specific weather

• is multi-species

See www.dpird.wa.gov.au for further information on Weed Seed Wizard.

This case …

Weed Seed Wizard Scenario - Dormancy Shift In Barley Grass In Balaklava, South Australia, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity research reports

The Weed Seed Wizard is a national collaborative project that uses paddock management information to predict weed emergence and crop losses now and in the future.

The Weed Seed Wizard is a computer simulation tool that:

• applies to all Australian grain growing areas

• helps growers understand and manage weed seedbanks on their farms

• uses farm management records to simulate how different crop rotations, weed control techniques, irrigation, grazing and harvest management tactics can affect weed numbers, the weed seedbank and yields

• uses farm-specific management and site-specific weather

• is multi-species

See www.dpird.wa.gov.au for further information on Weed Seed Wizard.

This South …

Weed Seed Wizard Case Study - An Early Harvest Versus A Late Harvest, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity research reports

The Weed Seed Wizard is a national collaborative project that uses paddock management information to predict weed emergence and crop losses now and in the future.

The Weed Seed Wizard is a computer simulation tool that:

• applies to all Australian grain growing areas

• helps growers understand and manage weed seedbanks on their farms

• uses farm management records to simulate how different crop rotations, weed control techniques, irrigation, grazing and harvest management tactics can affect weed numbers, the weed seedbank and yields

• uses farm-specific management and site-specific weather

• is multi-species

See www.dpird.wa.gov.au for further information on Weed Seed Wizard.

This case …

Season Influences Interspecific Responses Of Canopy-Forming Kelps To Future Warming And Acidification At High Latitude, Lauren E. Bell, Lily Westphal, Evan O' Brien, Jason A. Toy, Haleigh Damron, Kristy J. Kroeker

Biological Sciences Faculty Publications

Variability in primary producers' responses to environmental change may buffer higher trophic levels against shifts in basal resource composition. Then again, in instances where there is a lack of functional redundancy because consumers rely on a few species to meet their energetic requirements at specific times of the year, altered community production dynamics may significantly impact food web resilience. In high-latitude kelp forests, a complementary annual phenology of seaweed production supports coastal marine consumers' metabolic needs across large seasonal variations in their environment. Yet, marine consumers in these systems may face significant metabolic stress under the pronounced low pH conditions …

A Gis Tool For Optimal Forage Species Selection, David B. Hannaway, Christopher Daly, Michael D. Halbleib, Linda Brewer, Sophie Baur, Chelsea Clark, Emilie Krecklow, Scott Bassett

IGC Proceedings (1993-2023)

To determine appropriate forage species for US ecoregions, geographic information technologies (GIS) are being used to create climatic and soil factor maps. Excel spreadsheets and RStudio are used to create response functions of forage species to minimum and maximum temperature, annual precipitation, soil pH, soil salinity, and salinity. National forage data and expert opinion will evaluate quantitative tolerances, seasonal yield profiles, and pollinator suitability. These maps and agronomic and livestock use information will be shared with forage specialists and farmers to provide alternatives for improved perenniality, increased diversity, and system circularity. Future work will include development and evaluation of climate …

Revegetation Of Two Drained Reservoirs On The Elwha River Ten Years After Dam Removal, Michael Trier

EWU Masters Thesis Collection

The Elwha and Glines Canyon dams on the Elwha River, Washington, USA were removed between 2011 and 2014 after being in place for a century, and at the time were the largest dams ever removed. The resulting dewatering of Lake Aldwell, the reservoir of the Elwha dam, and Lake Mills, the reservoir of the Glines Canyon dam exposed over 270 hectares of land that had been submerged. While several studies have examined the revegetation of these drained reservoirs, none have gone beyond 5 years since dam removal. These studies found that sediment grain size and reservoir landform (valley walls, terraces …

Batch Culture Models Of The Murine Gut Microbiome & The Impact Of Simple Dormancy On Dormancy-Capable Microorganisms Models, Ana C. Mendez

Mathematics Dissertations

The proposed mathematical biology research utilizes mathematical models to gain insight into biological systems. These systems of ordinary differential equations model diverse topics, ranging from gut microbiomes to harmful algal blooms. A complete stability analysis, supporting phase plane portraits, bifurcation diagrams, and numerical simulations will accompany the models presented. In Chapter 2, the murine gut microbiome is modeled to match laboratory experiments in the literature. In these experiments, mice eat plasmid-carrying “donor” bacteria and naturally carry plasmid-free “resident” bacteria in their gut. The models aim to capture the behavior of plasmids, donor bacteria, and resident bacteria. Chapter 3 explores dormancy …

Developing Herbal-Based Beverage Fermentation Using Saccharomyces Cerevisiae: The Physico-Chemical Properties, Siti Madihah Mohd Don, Mas Munira Rambli, Beston Faiek Nore

ASEAN Journal on Science and Technology for Development

Herbal-based fermented beverages are popular non-dairy products among consumers who seek healthy and immunity-supporting products. Amongst commonly used health supplements that are added to food and beverage would be probiotics, commonly Saccharomyces cerevisiae or yeast. This study aims to determine the physico-chemical properties of fermented beverages at different fermentation periods using lemongrass (Cymbopogon citratus DC. Stapf), ginger (Zingiber officinale Rosc.), turmeric (Curcuma longa L.), mint (Mentha), and moringa (Moringa oleifera Lam.). This study revealed a significant decrease (p ≤ 0.05) in pH, total soluble solids, and density in most fermented beverages after 24, 36 and 48 hours of fermentation. Low …

Unlocking Antioxidant Potential: Comparative Analysis Of Sembada 188 And Keladi Rice As Functional Ingredients In Novel Food Production, Mas Munira Rambli, Natasha Azamain, Eng-Tong Phuah

ASEAN Journal on Science and Technology for Development

Rice (Oryza sativa L.) is an essential crop that is a dietary staple for more than half of the world's population. There is currently a movement in consumer behaviour toward healthier food consumption, which is fuelling interest in functional diets like coloured rice. Sembada 188 and Keladi rice are underutilised in Brunei Darussalam and are expected to have functional qualities. A comparison of antioxidant properties between Sembada 188 and Keladi rice was performed in this study. This research produced puffed rice treats prepared by steaming rice, washing, drying for 6-8 hours at 60℃, deep frying for 25 seconds at 180℃, …

Antioxidant And Antimicrobial Properties Of Yellow Mealworm (Tenebrio Molitor) Protein Concentrates And Hydrolysates Derived From Varied Dietary Regimens, Shyang-Pei Hong, Eng-Tong Phuah, Wey-Lim Wong, Yee-Ying Lee, Teck-Kim Tang, Ali Yassoralipour

ASEAN Journal on Science and Technology for Development

The larval stage of the darkling beetle, Tenebrio molitor, often referred to as the yellow mealworm, has received significant attention as a promising source of high-quality protein for human consumption due to its exceptional nutritional profile. This study focused on assessing the antioxidant and antimicrobial activities of protein concentrates and hydrolysates obtained from mealworm specimens raised under distinct dietary conditions. One cohort of mealworms was sustained on food waste comprising rice bran, milled corn, and carrots (self-bred) (SM), while another group was exclusively provided with rice bran (commercially fed) (CM). Enzymatic hydrolysis of mealworm protein was accomplished using protease enzymes …

Release Behavior Of Butterfly Pea Anthocyanins From Sago Starch Micro-Composite Films Under Food Stimulants, Afiqah Nabihah Ahmad, Eng Tong Phuah, Namasivayam Navaranjan, Syazana Abdullah Lim

ASEAN Journal on Science and Technology for Development

This study investigates the release behaviour of Butterfly Pea (BP) anthocyanins from Sago starch micro-composite (SMC) films in the presence of food stimulants. To comprehensively describe the release profiles of BP from SMC, six well-established kinetic release models were employed which includes Korsmeyer-Peppas, zero-order, first-order, second-order, Higuchi, and Hixson-Crowell models. These models played a crucial role in examining how the release fraction changes over time, facilitating a comprehensive understanding of the release kinetics of BP anthocyanins. Our data analysis revealed a strong conformity with the Korsmeyer-Peppas model, suggesting its applicability in describing the release of BP anthocyanins from SMC. The …

Assessing Stormwater Management Pond Water Quality, Function, And The Potential Biotic Effects To Receiving Waters, Mitchell Elstone

Theses and Dissertations (Comprehensive)

The use of stormwater management ponds (SWMPs) has been increasing over the past five decades. However, an in-depth understanding of the daily performance of SWMPs and functionality during cold periods is limited. This is in part because mandated monitoring is relatively infrequent, and the assumption that SWMPs are inactive between storm events and during the winter. The goals of this research were to better understand daily stormwater (SW) characteristics, the performance of SWMPs based on current forms of evaluation and assess the potential for SWMP effluent to impact downstream biota. Influent and effluent samples from two SWMPs were collected daily …

Nesting Habitat Selection And Management Of Three Freshwater Turtle Species Along The Shorelines Of Lake Champlain, Destini Acosta

Graduate College Dissertations and Theses

Habitat loss, caused by factors like urbanization and land conversion, disrupts ecosystems and can lead to population declines and even extinctions of species that rely on those habitats for survival. Loss of shoreline habitat has been widespread and reduces nesting grounds for species like freshwater turtles, often threatening their reproductive success and population viability. In the Lake Champlain Basin, several turtle species have experienced declines and recovery efforts are limited by a lack of information on habitats selected during the crucial period of nesting. This study aimed to identify and characterize nesting habitat selection of freshwater turtles and included two …

Triphlapan: Predicting Hla Molecules Binding Peptides Based On Triple Coding Matrix And Transfer Learning, Meng Wang, Chuqi Lei, Jianxin Wang, Yaohang Li, Min Li

Computer Science Faculty Publications

Human leukocyte antigen (HLA) recognizes foreign threats and triggers immune responses by presenting peptides to T cells. Computationally modeling the binding patterns between peptide and HLA is very important for the development of tumor vaccines. However, it is still a big challenge to accurately predict HLA molecules binding peptides. In this paper, we develop a new model TripHLApan for predicting HLA molecules binding peptides by integrating triple coding matrix, BiGRU + Attention models, and transfer learning strategy. We have found the main interaction site regions between HLA molecules and peptides, as well as the correlation between HLA encoding and binding …

Hite: A Fast And Accurate Dynamic Boundary Adjustment Approach For Full-Length Transposable Element Detection And Annotation, Kang Hu, Peng Ning, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jianxin Wang

Computer Science Faculty Publications

Recent advancements in genome assembly have greatly improved the prospects for comprehensive annotation of Transposable Elements (TEs). However, existing methods for TE annotation using genome assemblies suffer from limited accuracy and robustness, requiring extensive manual editing. In addition, the currently available gold-standard TE databases are not comprehensive, even for extensively studied species, highlighting the critical need for an automated TE detection method to supplement existing repositories. In this study, we introduce HiTE, a fast and accurate dynamic boundary adjustment approach designed to detect full-length TEs. The experimental results demonstrate that HiTE outperforms RepeatModeler2, the state-of-the-art tool, across various species. Furthermore, …