Physical Sciences and Mathematics Commons^™

Celestial Bodies, Rebecca L. Rand, Mark Popinchalk

Capstones

Most of us will never come close to touching space. But space touches us every day. On Celestial Bodies, journalist Rebecca Rand and astronomer Mark Popinchalk explore the ways outer space interacts with life on earth.

In Episode 1, hosts Rebecca Rand and Mark Popinchalk explore how, for millions of years, trees have been recording celestial events in space. Within the rings of their trunks, trees store radiation from solar flares, supernovae, and changes in the earth’s magnetic field. The hosts talk to Dr. Ben Pope to learn more about what we can discover by looking at radioactive molecules …

Mutational Analysis Of The Nitrogenase Carbon Monoxide Protective Protein Cown Reveals That A Conserved C‑Terminal Glutamic Acid Residue Is Necessary For Its Activity, Dustin L. Willard, Joshuah J. Arellano, Mitch Underdahl, Terrence M. Lee, Avinash S. Ramaswamy, Gabriella Fumes, Agatha Kliman, Emily Y. Wong, Cedric P. Owens

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Nitrogenase is the only enzyme that catalyzes the reduction of nitrogen gas into ammonia. Nitrogenase is tightly inhibited by the environmental gas carbon monoxide (CO). Many nitrogen fixing bacteria protect nitrogenase from CO inhibition using the protective protein CowN. This work demonstrates that a conserved glutamic acid residue near the C-terminus of Gluconacetobacter diazotrophicus CowN is necessary for its function. Mutation of the glutamic acid residue abolishes both CowN’s protection against CO inhibition and the ability of CowN to bind to nitrogenase. In contrast, a conserved C-terminal cysteine residue is not important for CO protection by CowN. Overall, this work …

Deep Learning Image Analysis To Isolate And Characterize Different Stages Of S-Phase In Human Cells, Kevin A. Boyd, Rudranil Mitra, John Santerre, Christopher L. Sansam

SMU Data Science Review

Abstract. This research used deep learning for image analysis by isolating and characterizing distinct DNA replication patterns in human cells. By leveraging high-resolution microscopy images of multiple cells stained with 5-Ethynyl-2′-deoxyuridine (EdU), a replication marker, this analysis utilized Convolutional Neural Networks (CNNs) to perform image segmentation and to provide robust and reliable classification results. First multiple cells in a field of focus were identified using a pretrained CNN called Cellpose. After identifying the location of each cell in the image a python script was created to crop out each cell into individual .tif files. After careful annotation, a CNN was …

12.04.2023 Orsp Newsletter, Liz Williamson

ORSP Newsletter

Week of December 4, 2023

The Dose-Response Effect Of Aerobic Exercise On Inflammation In Colon Cancer Survivors, Justin C. Brown, Stephanie L.E. Compton, Jeffrey A. Meyerhardt, Guillaume Spielmann, Shengping Yang

School of Medicine Faculty Publications

Background; Physical activity after surgical resection for colon cancer is associated with significantly longer disease-free survival. Inflammation is hypothesized to mediate the association between physical activity and disease-free survival in colon cancer. Methods; In this exploratory analysis of a randomized dose-response trial, 39 colon cancer survivors who completed standard therapy were stratified by cancer stage and randomized in a 1;1;1 ratio to one of three treatment groups for 24 weeks of usual-care control, 150 min/wk of moderate-intensity aerobic exercise (low-dose), or 300 min/wk of moderate-intensity aerobic exercise (high-dose). Inflammation outcomes included high-sensitivity C-reactive protein (hs-CRP), interleukin-6 (IL6), and soluble tumor …

Analyzing The Shark Paleoecology Of Coastal Georgia From The Miocene And Pliocene Epochs, Joshua Lee Clark, Benjamin Angalet

Georgia Journal of Science

The field of shark paleoecology often yields indecisive conclusions based on the limited fossilization of their anatomical structures, with the exception of their teeth. The majority of the Atlantic coast has been studied regarding the presence of certain prehistoric shark species from the Miocene, Pliocene, and Pleistocene epochs. However, information pertaining to the Georgia coast and understanding its potential community structure is relatively understudied. This study was conducted in which thousands of fossil shark specimens and subsequent marine fauna were collected from dredge spoils created by the US Army Corps of Engineers (USACE): Savannah District. A total of 5,127 fossil …

12.11.2023 Orsp Newsletter, Liz Williamson

ORSP Newsletter

December 11, 2023 Newsletter

Engineering Exosomes To Specifically Target The Mitochondria Of Brain Cells, Xin Yan, Xinqian Chen, Zhiying Shan, Lanrong Bi

Michigan Tech Publications, Part 2

Mitochondrial dysfunction is associated with various health conditions, including cardiovascular and neurodegenerative diseases. Mitochondrial-targeting therapy aims to restore or enhance mitochondrial function to treat or alleviate these conditions. Exosomes, small vesicles that cells secrete, containing a variety of biomolecules, are critical in cell-to-cell communication and have been studied as potential therapeutic agents. Exosome-based therapy has the potential to treat both cardiovascular and neurodegenerative diseases. Combining these two approaches involves using exosomes as carriers to transport mitochondrial-targeting agents to dysfunctional or damaged mitochondria within target cells. This article presents a new technique for engineering brain-derived exosomes that target mitochondria and has …

Engineering Exosomes To Specifically Target The Mitochondria Of Brain Cells, Xin Yan, Xinqian Chen, Zhiying Shan, Lanrong Bi

Michigan Tech Publications, Part 2

Mitochondrial dysfunction is associated with various health conditions, including cardiovascular and neurodegenerative diseases. Mitochondrial-targeting therapy aims to restore or enhance mitochondrial function to treat or alleviate these conditions. Exosomes, small vesicles that cells secrete, containing a variety of biomolecules, are critical in cell-to-cell communication and have been studied as potential therapeutic agents. Exosome-based therapy has the potential to treat both cardiovascular and neurodegenerative diseases. Combining these two approaches involves using exosomes as carriers to transport mitochondrial-targeting agents to dysfunctional or damaged mitochondria within target cells. This article presents a new technique for engineering brain-derived exosomes that target mitochondria and has …

Free-Radical Scavenging Activity And Total Phenolic Compounds Of Red And Green Poinsettia Leaves (Euphorbia Pulcherrima Willd.) From Lombok Island, Handa Muliasari, Baiq Sopiah, Emmy Yuanita, Baiq Nila Sari Ningsih

Makara Journal of Science

To determine the free-radical scavenging activity and total phenolic content of the ethanol extract of Poinsettia leaves (Euphorbia pulcherrima Willd.) from Lombok Island, we used the 1,1-diphenyl-2-picrylhydrazyl method and expressed the total phenolic content as gallic acid equivalent (GAE) per gram of ethanol extract. The results show the strong antioxidant activity (79.77 ppm) of the ethanol extract of red Poinsettia leaves and the moderate antioxidant activity of green Poinsettia leaves (118.350 ppm). The ethanol extracts of red and green Poinsettia leaves possessed an average of 63.276 ± 0.228 and 22.715 ± 0.090 mg GAE/g extract total phenolic contents, respectively. …

Enzymatic Screening And Genotypic Characterization Of Thermophilic Bacteria From The Hot Springs Of Sarawak, Malaysia, Seng Chiew Toh, Samuel Lihan, Sui Sien Leong, Azizul Hakim Lahuri, Wai Cheong Woon, Wing Woh Ng

Makara Journal of Science

Owing to their eccentric thermostable ability, thermophiles are among the most utilized extremophiles in various industries, such as manufacturing, and clinical research. Researchers believe that many unknown thermophiles are yet to be discovered. This study aimed to genotypically characterize the diversity of thermophiles and screen them for the potential production of enzymes in the recreational hot springs located at Northwest Coast of Borneo. Water samples were collected at 45 °C–50 °C from Annah Rais and Panchor hot springs during the sampling period from January 2018 to January 2019. Three samples (water and sediment) were collected twice in a 3-week interval …

An Inkjet-Printed Graphene Oxide–Poly(3,4-Ethylenedioxythiophene) Poly(Styrene Sulfonate) Electrode For Nitrite Detection In Water, Budi Riza Putra, Weni Anindya, Mohamad Rafi, Ika Kartika, Yudi Nugraha Thaha, Aga Ridhova, Wulan Tri Wahyuni

Makara Journal of Science

In this study, a screen-printed electrode (SPE) for nitrite (NO₂⁻) sensing was fabricated through an inkjet printing technique using a commercial printer machine and preparing an ink composite solution containing graphene oxide (GO) and poly(3,4 ethylenedioxythiophene) poly(styrene sulfonate) (PEDOT:PSS) as conductive materials. The optimum ink materials for SPE fabrication comprised GO and PEDOT:PSS with binders that resemble the viscosity of commercial ink. The surface topography of the fabricated SPE, which was characterized using scanning electron microscopy and atomic force microscopy, showed a smoother surface compared to the commercial screen-printed carbon electrode, with conductive ink materials deposited primarily …

Single Night Surveys Of Moth Communities Can Serve As Ultra-Rapid Biodiversity Assessments, Daniel P. Duran, Matthew Timar, Blaine Rothauser

School of Earth & Environment Departmental Research

Biodiversity conservation decisions are typically based on limited data and resources. For this reason, there is great interest in surveying taxa that may allow for a rapid assessment of the biodiversity at a site. Numerous taxa have been proposed and utilized for rapid assessments that allow for such a survey in a matter of weeks or less. Herein, we test the idea that nocturnal moths have many of the characteristics that make them ideal for such surveys, such as relative ease of identification, strong ecological association with specific plant species and habitats, high alpha diversity, extended seasonal activity, and ease …

The Unheard Voices Of The Arkansas Delta: Living Through School Desegregation, Tameka D. Williams

ATU Theses and Dissertations 2021 - Present

This study was guided by the central research question: What are the lived experiences and perceptions of former African American teachers and students that endured segregation, desegregation, and integration in Arkansas' Delta? The phenomenological study used eight former African American teachers and student participants. Of the participants, there were four former teachers and four former students. In this study, the participants' voices are captured as they share their experiences and perception of each phase of education that influenced their lives and left an everlasting imprint. Through counternarratives, the participants provided insight into education in the Arkansas Delta during school segregation, …

Addressing Water Hyacinth (Pontederia Crassipes) Impacts On Aquatic Biota In Lake Okeechobee, Joseph Salerno

All HCAS Student Capstones, Theses, and Dissertations

The incursion of water hyacinth, Pontederia crassipes in Lake Okeechobee has resulted in management systems to be implemented to reduce the coverage of the invasive macrophyte. Its residence in the Lake Okeechobee ecosystem and the effects it has on organisms in the lake, whether it be positive or harmful is unknown. This study attempted to assess the potential effects that water hyacinth has on aquatic biota in Lake Okeechobee. Biotic data were collected on open water, water hyacinth covered, and native vegetation covered habitats via hook-and-line fishing, electrofishing, baited minnow traps, and the sampling of plant roots over a thirteen-month …

Biophysical Factors Affecting Habitat Suitability For Crassostrea Virginica, Jason D. Tilley

Dissertations

Oyster reefs provide a variety of important ecosystem services. However, the mortality rate of eastern oyster, Crassostrea virginica, the dominant species that produces oyster reefs in the northern Gulf of Mexico, is increasing at an alarming rate due to a variety of abiotic and biological factors. I examined how biophysical factors, including the less-studied fatty acid profiles of the suspended particulate matter on which oysters feed, influenced morphometric condition of C. virginica.

I sampled suspended particulate matter (SPM) and oysters in-situ in the western Mississippi Sound, which historically supported the majority of oyster production in Mississippi waters. Sampling …

Dataset For The Incorporation Of Climate Change Into A Multiple Stressor Risk Assessment For The Chinook Salmon (Oncorhynchus Tshawytscha) Population In The Yakima River, Washington Usa, Wayne Landis, Chelsea J. Mitchell, John D. Hader, Rory Nathan, Emma E. Sharpe

Environmental Sciences Faculty and Staff Publications

Data files available below

This data set is in support of Landis et al (in press 2024). A key question in understanding the implications of climate change is how to integrate ecological risk assessments that focus on contaminants with the environmental alterations from climate projections. This article summarizes the results of integrating selected direct and indirect effects of climate change into an existing Bayesian network previously used for ecological risk assessment. The existing Bayesian network Relative Risk Model (BN-RRM) integrated the effects of organophosphate pesticides concentrations, water temperature, and dissolved oxygen levels on the Chinook salmon population in the Yakima …

Evaluating The Effectiveness Of The Internal Transcribed Sequences (Its) As Dna Barcodes To Estimate Fungal Diversity, Jailisa Linares

All HCAS Student Capstones, Theses, and Dissertations

Universal phylogenetic markers such as the nuclear ribosomal internal transcribed sequences (ITS), specifically ITS1 and ITS2, are routinely used to estimate fungal diversity in environmental samples. However, numerous studies report differences in the performance and efficacy of ITS1 and ITS2 in documenting fungal diversity. To better understand the implications of using ITS1 versus ITS2, a comprehensive representation of the diverse fungal taxa was necessary to conduct a meta-analysis of their use across multiple fungal taxa. In order to address this, a thorough literature review was conducted to compare and contrast the use of ITS1 and ITS2 as effective DNA barcodes. …

Activity Patterns Of The Endangered Amargosa Vole (Microtus Californicus Scripensis), Austin N. Roy, Anna D. Rivera Roy, Deana L. Clifford, Janet E. Foley

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Examining the activity patterns of wildlife is an important aspect of understanding the ecology of a species and may be especially important for species of conservation concern. We used remotely triggered cameras to describe the daily and seasonal activity patterns and examine ecological factors that influence the activity of the Amargosa Vole (Microtus californicus scirpensis), a California endemic listed federally and by the state as Endangered, and is a marsh habitatspecialist in the Mojave Desert. We found that vole activity was greatest during crepuscular periods, followed by nocturnal and diurnal periods. We saw strong seasonal effects, with the highest activity …

Nitrogen Fertilization And Harvest Management Improve Forage And Crude Protein Content In Crabgrass, B. C. Pedreira, I. T. M. D. Barros, J. I. Yasuoka, D. Helwig, J. K. Farney, G. F. Sassenrath

IGC Proceedings (1993-2023)

Crabgrass (Digitaria spp.) is an annual summer grass that can provide high-quality forage, but optimal management strategies are unclear. Our objective was to compare the yield and quality of crabgrass (Mojo and Quick-N-Big) under different nitrogen rates and harvest management. The experimental design was a randomized complete block with five treatments and three replications for each crabgrass variety, totaling fifteen experimental units for both Mojo and Quick-N-Big, in adjacent sites. Treatments were nitrogen rates (0, 100, and 200 lb N/acre) and harvest management (cut once or twice per year) for two growing seasons (2020 and 2021). Total forage accumulation …

Chemical Composition And Microbial Diversity Of The Silage Of Forage Peanut Harvested At Two Regrowth Ages And Treated With Microbial Inoculants, A. J. S. Macêdo, O. G. Pereira, V. P. Da Silva, A. J. Dos Anjos, W. Alves, H. R. O. Santos, K. G. Ribeiro

IGC Proceedings (1993-2023)

The objective of this study was to evaluate the chemical composition and microbial diversity of the silage of forage peanut harvested at 40 and 80 days of regrowth and treated with microbial inoculants. The inoculants evaluated were commercial inoculant (CI) Sil-All 4×4 (Lallemand®, Brazil); the AV14.17, Lactiplantibacillus pentosus strain (ISO) isolated from alfalfa silage; and control (CTRL), without inoculant. A total of 500 g of forage was ensiled in nylon-polyethylene bags (25.40 × 35.56 cm). After 60 days of fermentation, the bags were opened and silages were analyzed for dry matter (DM), mineral matter (MM), organic matter (OM), crude protein …

Evapotranspiration Of Rewetted And Drained Fen Soils With Grass – Long Term Lysimeter Studies, M. Pesch, J. Hoysagk, F. Eulenstein, A. Behrendt

IGC Proceedings (1993-2023)

In the context of reducing greenhouse gas (GHG) emissions to combat climate change, rewetting of peatlands is of particular importance. High groundwater levels covering organic matter in the soil prevent its oxidation to CO₂. The amount of water needed to allow the rewetting of peatlands can be determined in lysimeter studies.

The evapotranspiration in fens depends essentially on the groundwater table, the vegetation (transpirational active biomass) and the saturation deficit of the atmosphere. After rewetting, these factors can lead to an evapotranspiration of 1000 l m^-2 a^-1 and even 2000 l m^-2 a^-1 in …

Industrial Hemp Forage Potential, Swarup Podder, John H. Fike, B. Wilson

IGC Proceedings (1993-2023)

Hemp (Cannabis sativa L.) has been a valuable species for humans throughout history due to its adaptability and diverse uses. Farmers are interested in hemp as a forage and feedstuff due to its unique nutritional properties and fast summer production. Moreover, the presence of cannabinoids in leaf and bud tissues may provide pharmacological benefits to animal health, productivity, and product quality under different regulatory frameworks. This study examined two hemp cultivars, Grandi and Joey, solely as forage crops, and samples were taken at different growth stages in Blacksburg, VA, USA, in 2021. The highest biomass production of 1.41 tons per …

Differential Responses Of Yield And Shoot Traits Of Five Tropical Grasses To N And Distance To Trees In Silvopastoral Systems, L. S. Pontes, Emilio A. Laca

IGC Proceedings (1993-2023)

Light intensity and nitrogen (N) availability are important factors influencing the growth of C₄ forage species. Trade-offs may occur in the adaptive responses of species to shading and N inputs, and functional shoot traits can help to explain the consequences of these responses for species performance. Our objective was to gain understanding of the mechanisms between traits of five C₄ perennial grasses determining above-ground dry matter yield (DMY) when both resources, light and N, vary. Forage grasses were grown in six shading conditions (full sunlight vs. five positions between Eucalyptus dunnii rows) with two N levels (0 vs. …

Clovers Around The World: A Symposium In Memory And Honor Of Dr. Norman L. Taylor, Kenneth H. Quesenberry, D. Boone, B. M. Irish

IGC Proceedings (1993-2023)

Trifolium is arguably the largest and most diverse genera of herbaceous forage legumes (Zohary and Heller, 1984). Dr. Norman L. Taylor, Professor Emeritus, Department of Plant and Soil Science, University of Kentucky, deceased, was a pioneer and champion of collection and preservation of Trifolium species throughout his 57-year career. Dr. Taylor was a native of northern Kentucky, born near where this Conference is being held.

Estimating The Carrying Capacity For Habitat Of Urial Wild Sheep (Ovis Orientalis) In Tandoureh National Park, Iran, M. Rahimian, F. Tabatabaei Yazdi, Mansour Mesdaghi

IGC Proceedings (1993-2023)

In an attempt to estimate forage production and carrying capacity of wild ungulates in Tandoureh National Park of Iran, the Babanestan grassland was selected, as the typical habitat of about 200 Urial wild sheep. In order to estimate the carrying capacity of this habitat for foraging of Urial wild sheep, this habitat with an area of 132 hectares was classified as low flat (LF), high flat (HF), north aspect (NA), and south aspect (SA). Then, to estimate forage production, clipping method of comparative yield was used. In each land form, standing crop yield of five reference plots of 1-^{m2 …}

Development Of Novel Interspecific Fertile Cytotype (4x) Of Pennisetum Glaucum X Pennisetum Purpureum Utilizing Modified Ploidy Coupled With Embryo Rescue Technique, Maneet Rana, N. Kumar, R. Gajghate, S. Kumar, R. Kaldate, Kamini Gautam, R. P. Sah, R. Verma, H. A. Bhargavi, R. P. Saini, S. Ahmed, P. Kaushal, A. K. Roy, A. Chandra

IGC Proceedings (1993-2023)

Interspecific hybrids of genus Pennisetum (P. glaucum x P. purpureum) is the one of the most popular manmade hybrid. It combines the unique features of both P. glaucum (Pearl millet; Bajra) and P. purpureum (Napier; Elephant grass) species, which makes it more resilient to harsh environments with superior fodder quality. Due to ploidy level variation among the parents, these hybrids are sterile and propagated vegetatively only. To overcome this, attempts were made in the present study by exploring the feasibility of novel tetraploid pearl millet (2n=4x=28; Tetra 1; INGR 09047) developed at IGFRI, as a female parent in …

Integrating Grazing With 2,4-D And Florpyrauxifen To Control Broadleaf Weeds And Maintain Red Clover Productivity In Grass-Legume Pastures, M. J. Renz, G. M. Imhoff

IGC Proceedings (1993-2023)

In grass-legume pastures, 2,4-D-amine + florpyrauxifen-benzyl controls broadleaf weeds but red clover (Trifolium pratense L.) is eliminated. Grazing within a week prior to herbicide application is likely to reduce leaf surface area and may reduce red clover injury and maintain productivity. Experiments were conducted in 2020 and in 2021 to determine if red clover could be productive when 560 g ae ha-1 2,4-D-amine + 6.3 g ae ha^-1 of florpyrauxifen-benzyl with 1% v/v methylated seed oil applied in the spring was grazed before or after herbicide application. Grazing timings occurred 6, 4, or 2 days prior to herbicide …

Use Of Genuine Sources Of Ergot Resistance In Species Of The Dilatata Group Of Paspalum, R. Reyno, S. Murchio, C. Goñi, W. Iriarte, H. Oberti, Javier Do Canto, Walter Ayala, C. Rossi, M. Dalla-Rizza

IGC Proceedings (1993-2023)

Paspalum dilatatum Poir. (dallisgrass) is an excellent C4 forage for summer production, highly productive with a wide distribution within warm-temperate regions. P. dilatatum is native to South America with special relevance for milk and meat production since its forage quality is superior to that of other C4 forage grasses and it shows tolerance to frost and water stress. In situations of temperate and warm temperate climate, the presence of these species plays a key role in the ecological stability of the system due to the complementarity of the growth cycles between winter and summer grasses. Claviceps paspali (ergot) is a …

Fermentation Profile Of Signal Grass Silages Intercropped With Calopo Or Fertilized With Nitrogen And Treated With Microbial Inoculant, Karina G. Ribeiro, Tâmara Chagas De Silveira, João Paulo Santos Roseira, Albert José Dos Anjos, Wagner Souza Alvez, Danielle Nascimento Coutinho, Odilon G. Pereira

IGC Proceedings (1993-2023)

Tropical grasses have characteristics that allow the occurrence of undesirable fermentations resulting in low quality silage. Inoculants can improve silage quality. Fermentation profile and microbial population of signal grass silages under four management (M), with and without microbial inoculant, were evaluated. The experiment was carried out in a 4 × 2 factorial scheme, with silages of signal grass managed without N application (control, 0N), fertilized with 50 kg ha^-1 of N (50N), fertilized with 100 kg ha^-1 of N (100N), or signal grassintercropped with calopo (Calopogonium mucunoides D.) (LEG), with inoculant (I) andwithout inoculant (WI), in a …