Physical Sciences and Mathematics Commons^™

Phylogeny And Disparity Of Ammonoid Family Acanthoceratidae Over Ocean Anoxic Event 2, Lindsey Howard

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

The widespread use of genera as proxies for species in paleobiological studies might affect the results of these studies. Although most attention has been given to taxonomic diversity studies, this could also be true of disparity and phylogenetic studies. In particular, the assumption that particular character states truly diagnose all members of a genus might distort results. This study examines the disparity of Acanthoceratid ammonoids at both the generic and species level. 149 species from 42 genera were examined with 52 characters measured. Following the measurements, an inverse modeling simulation was run 100 times to generate a simulated phylogeny with …

Assessing Soil Properties For Optimized Irrigation Development In Sudan, Northern Africa, Suhib Hamid, Derek M. Heeren, Aaron R. Mittelstet, Saleh Taghvaeian, Randall S. Ritzema

Department of Biological Systems Engineering: Conference Presentations and White Papers

Sustainable irrigation methods maximize agricultural productivity in Northern African countries like Sudan. This project evaluates soil properties to develop optimized irrigation strategies for Sudan's arid and semi-arid climate. Assessing soil characteristics such as texture, infiltration rates, and nutrient content informs the selection of modern irrigation systems. Data from 3,192 locations, collected using GPS and ring infiltrometers for infiltration rates, alongside laboratory analyses for soil properties, were employed. A ranking system determined suitable irrigation systems for specific soil classes, considering factors like slope, wind, crop tolerance, available water capacity (AWC), drainage, germination, capital cost, labor cost, maintenance, and evapotranspiration (ET). The …

Hybridization Between The Rare Gray-Headed Chickadee And The Abundant Boreal Chickadee In The Midst Of Shifting Climate, Matthew R. Armstrong

School of Natural Resources: Dissertations, Theses, and Student Research

As species respond to changing climate, distributions and abundances may shift and alter species interactions. Hybridization, a relatively widespread phenomenon becoming more common with climate change, can have beneficial and detrimental effects on population growth rates and genetic integrity. Beneficial effects due to the introduction of advantageous alleles and increased genetic diversity may result from hybridization. Species may also accrue fitness costs associated with changing climates if mismatches occur between environmental variables and phenotypes. The gray-headed chickadee, Poecile cinctus lathami, is an extremely rare songbird that has experienced marked declines in recent decades within its restricted distribution in Alaska …

Population Demography, Occupancy, And Connectivity Of Invasive Bigheaded Carp In The Platte River, Nebraska And Its Tributaries, Blake W. Logan

School of Natural Resources: Dissertations, Theses, and Student Research

Silver Carp Hypophthalmichthys molitrix and Bighead Carp H. nobilis, collectively referred to as bigheaded carp, are invasive species in the United States of America that have expanded their range throughout the Missouri River basin in the last three decades. It may be desirable to develop management plans directed at the monitoring, control, or removal of bigheaded carp within the Missouri River basin. However, a knowledge gap exists regarding bigheaded carp ecology in Missouri River tributaries, which may be important for the development of management plans. As such, this study characterized bigheaded carp population demographics, occupancy, and connectivity in …

Virtual Fencing In Livestock Management: Effects On Beef Cattle Stress And Enhancing Wildlife Conservation, Kaitlyn E. Dozler

School of Natural Resources: Dissertations, Theses, and Student Research

I examined the effects of virtual fencing on beef cattle stress and how implementing the technology can aid wildlife habitat conservation at the University of Nebraska Gudmundsen Sandhills laboratory (GSL) near Whitman, NE. First, I examined how virtual fencing influences acute heart rate changes in beef cattle fitted with the virtual fencing collars. No significant difference in the average heart rate of a cow (P > 0.05) was observed between the 30 min control and virtual fenced periods for both trial dates. Second, I examined the influence of topography on wildlife species richness and presence at GSL using wildlife camera …

Spatial Ecology Of Mountain Lions Throughout Their Distribution In California, Kyle D. Dougherty

School of Natural Resources: Dissertations, Theses, and Student Research

Mountain lions (Puma concolor) have been studied extensively throughout their wide geographic distribution in the Western Hemisphere, but most research has been conducted at relatively small spatial scales. We used GPS telemetry data contributed by researchers in 16 study areas throughout California to advance understanding of mountain lion spatial ecology. First, we investigated multi-scale resource selection of mountain lions relative to spatially varying risk of intentional human-caused mortality associated with livestock depredation management. We show that individuals that proactively avoided mortality risk when selecting home ranges were able to relax their avoidance of risk when making resource selection …

Heat Stress Changes The Bovine Methylome And Transcriptome And Investigation Of Two Novel Genetic Defects In Cattle, Rachel Renae Reith

Department of Animal Science: Dissertations, Theses, and Student Research

Heat stress is a major concern for livestock producers due to its negative impact on animal health and productivity. Heat stress does so by altering expression of genes through different regulatory mechanisms such as DNA methylation. Understanding how heat stress alters gene expression will help elucidate the genetic basis of physiological changes as well as identify targets for possible heat stress mitigation. The purpose of the first study was to understand how heat stress alters the adipose and skeletal muscle transcriptomes in zilpaterol-fed Brahman, as zilpaterol improves muscle growth and may mitigate the effects of heat stress. Differential expression and …

Integrating Remote Sensing And Machine Learning To Determine Past, Current And Future Crop Water Use From The Nubian Sandstone Aquifer System, Moaz Ishag

Department of Biological Systems Engineering: Dissertations and Theses

The agriculture sector is a significant consumer of water, and sustainable water use begins with monitoring irrigated land. Delineating irrigated land supports decision-makers and promotes the sustainable use of this crucial resource. This study focuses on the Nubian Sandstone Aquifer System (NSAS), the largest aquifers in the world, which spans Egypt, Sudan, Libya, and Chad. The study aims to: 1) quantify the increase in irrigated hectares (both pivot and non-pivot) from 2000-2001 to 2023-2024; 2) identify major irrigated crop types and their water requirements; and 3) quantify groundwater crop water use from the NSAS using remote sensing via the Google …

New Insights On Hybridization In Potamogeton Floridanus (The Florida Pondweed)), Kaitlyn R. Sampson

<strong> Theses and Dissertations </strong>

Freshwater ecosystems are some of the most important and highest threatened habitats in the world, and aquatic plants play an important, but often-overlooked, role in maintaining them. Potamogeton is a diverse and ecologically important aquatic plant genus well known for taxonomic difficulty and rampant hybridization. lbis study aimed to 1) test the hypothesis that Potamogeton jloridanus (Florida pondweed) is a hybrid between P. oakesianus and P. pulcher, and 2) to investigate correlations in ecological conditions for the focal species. This study revealed the discovery of a new population of P. jloridanus in Big Coldwater Creek in Santa Rosa Co., FL, …

Exploring Producers' Willingness To Pay For Ecosystem Services: Three Essays On Soil Health, Location Preferences, And Cover Crop Adoption, Kaouter Essakkat

Dissertations and Doctoral Documents from University of Nebraska-Lincoln, 2023–

This dissertation comprises three essays: one assessing Midwest producers' willingness-to-pay (WTP) for soil health-enhancing ecosystem services (ES), another examining the impact of policy implementation locations on WTP, and a third identifying factors influencing producers' adoption of cover crops (CC).

The first essay pioneers the understanding of agricultural producers’ valuation of soil health-associated ES amid growing concerns of soil degradation due to agricultural intensification. Using a discrete choice experiment, this study assesses producers’ WTP for a policy that incentivizes ES provision, specifically improved water quality, carbon sequestration, and enhanced crop yield. Surveying producers across Iowa, Kansas, and Nebraska, our results show …

Ocular Gene Transfer In The Spotlight: Implications Of Newspaper Content For Clinical Communications, Shelly Benjaminy, Tania M. Bubela

Office of the Provost

Background: Ocular gene transfer clinical trials are raising hopes for blindness treatments and attracting media attention. News media provide an accessible health information source for patients and the public, but are often criticized for overemphasizing benefits and underplaying risks of novel biomedical interventions. Overly optimistic portrayals of unproven interventions may influence public and patient expectations; the latter may cause patients to downplay risks and over-emphasize benefits, with implications for informed consent for clinical trials. We analyze the news media communications landscape about ocular gene transfer and make recommendations for improving communications between clinicians and potential trial participants in light of …

Arkansas Corn And Grain Sorghum Research Studies 2023, Jason Kelley, Travis Faske

Arkansas Agricultural Experiment Station Research Series

e 2023 edition of the Arkansas Corn and Grain Sorghum Research Studies Series includes research results on topics pertaining to corn and grain sorghum production, including weed, disease, and insect management; economics; irrigation; agronomics; soil fertility; mycotoxins; cover crop management; and research verification program results. Our objective is to capture and broadly distribute the results of research projects funded by the Arkansas Corn and Grain Sorghum Board. The intended audience includes producers and their advisors, current investigators, and future researchers. The Series serves as a citable archive of research results.

A Deep Learning Method To Predict Bacterial Adp-Ribosyltransferase Toxins, Dandan Zheng, Siyu Zhou, Lihong Chen, Guansong Pang, Jian Yang

Research Collection School Of Computing and Information Systems

Motivation: ADP-ribosylation is a critical modification involved in regulating diverse cellular processes, including chromatin structure regulation, RNA transcription, and cell death. Bacterial ADP-ribosyltransferase toxins (bARTTs) serve as potent virulence factors that orchestrate the manipulation of host cell functions to facilitate bacterial pathogenesis. Despite their pivotal role, the bioinformatic identification of novel bARTTs poses a formidable challenge due to limited verified data and the inherent sequence diversity among bARTT members. Results: We proposed a deep learning-based model, ARTNet, specifically engineered to predict bARTTs from bacterial genomes. Initially, we introduced an effective data augmentation method to address the issue of data scarcity …

T. Boudieri Extract Potentiates The Effects Of Capecitabine Treatment In Human Colon Cancer Cells, Katia Sawaya, Mahmoud Khalil, Ghada Khawaja

BAU Journal - Science and Technology

Resistance to chemotherapy remains a major challenge for colorectal cancer patients worldwide, hence the persistent need to uncover alternative treatments as well as new adjunct therapies in the fight against cancer. Natural extracts constitute an excellent source of bioactive substances that have a promising potential in that regard, with minimal negative side effects. We have previously demonstrated that both the ethanolic as well as the water extracts of Terfezia boudieri, a black desert truffle abundant in and part of the cuisine of the Mediterranean region, have significant antiproliferative effects against colon cancer cells. Our aim in this study was …

Evaluating Past Progress And Assessing Prediction Breeding Strategies For Sustained Genetic Gains In The Louisiana Sugarcane Variety Development Program, Brayden A. Blanchard

LSU Doctoral Dissertations

The aim of this dissertation is to outline important considerations for the Louisiana Sugarcane Variety Development Program (LSVDP) as it pertains to historical progress, impact, goal setting, and new strategies for continued genetic gains. Industry progress was evaluated with robust regression models to quantify rates of productivity gains. Over the last 50 years, statistically significant productivity gains were identified in sucrose content (45%), cane yield (32.2%), and sugar yield (93%) while pairwise comparisons of decades showed that progress was incremental rather than rapid and sustained once achieved. The decade from 1990-1999 was identified as the only decade with a significant …

The Potential Impact Of Endangered Species Legislation On Federal Grazing Lands And The Livestock Industry, G M. Luciuk, B Bristol, T W. Weins, D M. Boyle

IGC Proceedings (1993-2023)

Crown based grazing is an integral part of the management structure of cattle operations, and is very important to the economic fabric of rural communities. Federal crown lands, such as the PFRA operated community pastures are an integral part of the resource conservation efforts in western Canada. These lands represent a significant reservoir of the remaining natural lands which are important for wildlife habitat. Sustainable management of such contiguous blocks of land is essential for the maintenance of biodiversity. Proposed endangered species legislation would require the development of recovery plans on federal lands for endangered, threatened and extirpated species. Rural …

Concepts For Mining Landscape Development In Eastern Germany With Grazing Animals And Agroforestry, S Eichler, F Herzog

IGC Proceedings (1993-2023)

Leipzig South (Saxony) has been heavily transformed by open cast lignite mining. Alternative forms of land use are sought which contribute to an increase of biodiversity and an improvement of soil quality. This could be achieved by the selective introduction of grazing animals and perennials. Specific scenarios for open pits, dumping areas, open pits’ slopes and land reclaimed for agriculture are proposed. Socio-economic drawbacks are outlined.

The Use Of Grasslands To Improve Water Quality In The New York City Watershed, D J. Flaherty, J Drelich Jr

IGC Proceedings (1993-2023)

The purpose of this paper is to demonstrate how grasslands are used in the New York City (NYC) Watershed to improve water quality. A Watershed Agricultural Program was established to voluntarily implement Pollution Prevention Best Management Practices on watershed farms. Grasslands have been used in Whole Farm Plans to reduce nutrients, sediments and other toxic materials reaching New York City’s water supply. Rotational grazing has been used to limit access to streams and stream banks and improve nutrient distribution on pastures. Improved grassland management also helps correct the nutrient balance on the farm and facilitates better nutrient management. Brush removal …

Objective Indicators For Monitoring Drought In Grasslands, D H. White, S M. Howden

IGC Proceedings (1993-2023)

Australia’s National Drought Policy was ratified by the Commonwealth (Federal), State and Territory governments in 1992. However, a sequence of El Niño-based events that started in Queensland in 1991 culminated in much of Australia experiencing abnormally low rainfall throughout 1994 and into 1995. Many farmers experienced substantial loss of income. The Commonwealth government therefore devised measures to determine which areas had been exposed to exceptional drought so that financial assistance could be directed as effectively as possible. In this paper we discuss progress in developing regionally-sensitive indicators and methodologies to aid in future assessments of drought exceptional circumstances.

Are We Ignoring Science In Our Quest For Simplicity In Range Management?, W A. Laycock

IGC Proceedings (1993-2023)

Accurate determination of range condition and trend is essential for proper range management. In the United States, the range condition model currently used is not based on up-to-date ecological knowledge. It assumes a single stable state (climax) and linear pathways. Multiple stable state models more accurately depict community dynamics but have not been widely accepted. U.S. Federal land management agencies are using surrogates, such as qualitative “instant trend” measures and substitution of utilization for measured condition and trend to guide management. Most of these short cuts are not based on science. Attacks on livestock grazing by environmentalists are based on …

Socio-Economic And Climate Change In Mongolia - Effects On Grassland Ecosystems, C Opp

IGC Proceedings (1993-2023)

In Mongolia, in combination with strong changes of the whole society during the past 76 years, from the feudal system to socialism and from the socialist system of planned development to the market economy, there are a lot of changes in the use of natural resources all over the country. In consequence of this a lot of effects on grassland ecosystems, caused by socio-economic and climate driving factors, were observed and studied in different scales: zonal, regional, local.

Integrating Biophysical And Economic Models For Assessing Impacts Of Change On Grazingland Ecosystems, J De Souza Neto, J R. Conner, J W. Stuth, W T. Hamilton, J W. Richardson

IGC Proceedings (1993-2023)

PHYGROW, a hydrologic-based forage simulation model, was parameterized to represent a typical South Texas ranch engaged in the production of cattle and meat goats with an indigenous population of white-tailed deer. Forage production and associated stocking rates for two cattle: goat ratios were simulated for 20 years. Two, ten-year weather scenarios, one representing normal conditions (30% drought years) and one representing dryer weather conditions (50% drought years) were analyzed. Management decision rules were developed for the region to produce estimates of annual animal production and operating cost for the enterprises in each of the four scenarios. These performance and cost …

Linear And Community-Based Processes Of Ethical Decision Making For Grassland Workers, Gary W. Fick

IGC Proceedings (1993-2023)

Grasslands are basic elements in sustainable development, but few grassland workers are familiar with concepts of ethical decision making useful in integrating ecological, economic, and sociological components of sustainability. Most published procedures for ethical decision making are based on linear models for individualized social systems with modern technologies. In the context of sustainable agriculture, nonlinear community-based procedures may be more appropriate. In this paper, a nonlinear model from the Haudenosaunee (Iroquois) Indians is compared to more conventional linear procedures. After identification of a problem, linear models often leave the solution of the ethical dilemma (ranking ethical goals when they conflict) …

Policy Options For Decreasing N And P2o5 Losses From Grassland Based Dairy Farms, P.B M. Berentsen, G.W J. Giesen

IGC Proceedings (1993-2023)

Policy instruments for reducing nutrient losses include extension and education, research, financial incentives such as subsidies and levies, and regulations. The potential of these instruments for reducing nitrogen (N), phosphate (P2O5), and ammonia (NH3) losses is examined for Dutch specialized dairy farms on sandy soils. A linear programming model is used to estimate policy impacts. Results indicate that efficiency improvements through extension, education, and research alone have the potential to decrease total N losses to government target levels in 2005 and to erase 92% of the gap between base and target P2O5 losses, but only 24% of the corresponding NH3 …

Production V Conservation: A Policy Dilemma In The Tree Clearing Debate In Queensland, Australia, J C. Scanlan, E J. Turner

IGC Proceedings (1993-2023)

A process for developing policy for tree clearing that meets the competing goals of conservation and production has been followed. There were two levels at which policy was developed. An overall Statewide policy outlined general targets to meet commitments of the Queensland Government. Local guidelines were developed by a large number of groups containing representatives of government and interested conservation movement and industry representatives. The policy and the local guidelines are an important part of the process used to assess applications for permits to clear woody vegetation.

Forage Production And Performance Of Beef Yearlings Grazing Diploid And Tetraploid Crested Wheatgrass, J D. Bruynooghe, R.D H. Cohen, N W. Holt, P G. Jefferson

IGC Proceedings (1993-2023)

A series of experiments were conducted during 1994 and 1995 at Swift Current, Saskatchewan, Canada to evaluate forage production and animal performance on tetraploid Kirk (Agropyron cristatum (L.) Gaertn.) and diploid Fairway (Agropyron cristatum (L.) Gaertn.) crested wheatgrass pastures under grazing conditions imposed by beef (Bos taurus) yearling steers at four stock density levels (3, 4, 6 and 8 steers ha-1). Total ungrazed forage production for Kirk was greater (<0.05) than Fairway (6302 kg ha-1 vs. 5235 kg ha-1) in 1994 but less (P<0.05) than Fairway in 1995 (3709 kg ha-1 vs. 4633 kg ha-1). Animal performance (average daily gain, animal grazing days and total animal production) did not differ (P>0.05) for steers grazing either Kirk or Fairway pastures. Plant vigour and available energy reserves following one season of grazing were evaluated through etiolated growth with …

Vertical Distribution In Grass Swards: Interactions Between Dry Matter And Nutritional Quality, D R. Buckmaster, R H. Mohtar, S L. Fales

IGC Proceedings (1993-2023)

A field experiment was conducted to study the distribution of mass and quality over plant height throughout the growing season in a pure stand of orchardgrass (Dactylis glomerata L.). When plant density (expressed as kg DM/ha per cm height) is plotted against a height of strata, all treatments show a similar linear shape distribution. ADF and NDF concentrations declined with sward height. Fall treatments had lower ADF and NDF concentrations than summer treatments. Conversely, CP concentrations showed an increase with plant height. Fall treatments showed higher CP than spring and summer treatments. Defoliation management did not affect orchardgrass quality. …

Application Of The Phygrow Forage Production- Runoff Model For Regional Stocking Analysis, J W. Stuth, J R. Conner, W T. Hamilton, D M. Schmitt

IGC Proceedings (1993-2023)

A hydrologic-based forage production model, PHYGROW, was used to simulate forage production and carrying capacity of a subtropical shrubland complex of over 34 species grazed by various ratios of cattle and goats with a population of indigenous white-tailed deer over a 20-yr simulated weather profile. The diet selection algorithm allowed the three animal populations to selectively graze preferred foods based on preferences of plant species, plant parts, and live:dead status by phenological stage. A level of maximum utilization of key species was specified. An incremental analysis of cattle:goat demand ratio was analyzed to determine how different combinations of livestock were …

Using Nested Paddocks To Study Multiple-Paddock Grazing Systems, B E. Anderson, W W. Stroup, W H. Schacht

IGC Proceedings (1993-2023)

There is insufficient information to guide development of multiple paddock grazing systems. Measuring vegetation responses to grazing period/recovery period intervals is prohibitively expensive when using most grazing research designs. Nested paddock designs reduce land area, number of herds, and number of paddocks needed for comparisons. Nested paddocks permit comparisons of animal performance among whole pasture treatments but comparisons are limited for animal performance differences among grazing/recovery period lengths. Nonetheless, nested paddock designs efficiently document vegetation responses to grazing intervals, which may permit predictions of animal performance.

Relationship Between Broadleaf Dock (Rumex Obtusifolius L.) And Seasonal Yield Of Orchardgrass Grazed Pasture, Y Iijima, Y Kurokawa, T Monya, Y Suzuki

IGC Proceedings (1993-2023)

In order to grasp the ecology of R. obtusifolius and the effects of it on seasonal yield of grass in grazing pasture, we investigated seasonal sward characteristics and dry matter yield in grazing pasture. Dry matter yield and coverage of R. obtusifolius predominated those of grass after mid-June and mid-August, respectively. Throughout the year the coverage of R. obtusifolius negatively correlated to the grass yield. After August, the grass yield was negatively related to the yield and the population density of R. obtusifolius. From the facts described above, R. obtusifolius seems to reduce grass yield throughout the year, especially …