Physical Sciences and Mathematics Commons^™

An Evaluation Of Avian Influenza Virus Whole-Genome Sequencing Approaches Using Nanopore Technology, Hon S. Ip, Sarah Uhm, Mary Lea Killian, Mia K. Torchetti

United States Department of Agriculture Wildlife Services: Staff Publications

As exemplified by the global response to the SARS-CoV-2 pandemic, whole-genome sequencing played an important role in monitoring the evolution of novel viral variants and provided guidance on potential antiviral treatments. The recent rapid and extensive introduction and spread of highly pathogenic avian influenza virus in Europe, North America, and elsewhere raises the need for similarly rapid sequencing to aid in appropriate response and mitigation activities. To facilitate this objective, we investigate a next-generation sequencing platform that uses a portable nanopore sequencing device to generate and present data in real time. This platform offers the potential to extend in-house sequencing …

Assessing Ecosystem Health Through Contaminants In The Tijuana River National Estuarine Research Reserve, Nancy Torres

Theses

Although the Tijuana River Estuary (TRE) remains the largest, most-intact coastal wetland in Southern California, it has a history of major changes, much of this related to its location immediately north of the US / Mexico Border. One of the primary challenges is cross-border flows from the rapidly growing city of Tijuana, Baja California, Mexico, and the delivery of wastewater, debris, and sediment to sensitive coastal wetland ecosystems. There is a need to more fully investigate these environmental changes to assess the ecosystem health of the Tijuana River Estuary over time, especially related to pollution impacts. This can inform an …

Development Of A Benchmark Eddy Flux Evapotranspiration Dataset For Evaluation Of Satellite-Driven Evapotranspiration Models Over The Conus, John M. Volk, Justin Huntington, Forrest S. Melton, Richard Allen, Martha C. Anderson, Joshua B. Fisher, Ayse Kilic, Gabriel Senay, Gregory Halverson, Kyla Knipper, Blake Minor, Christopher Pearson, Tianxin Wang, Yun Yang, Steven Evett, Andrew N. French, Richard Jasoni, William Kustas

School of Natural Resources: Faculty Publications

A large sample of ground-based evapotranspiration (ET) measurements made in the United States, primarily from eddy covariance systems, were post-processed to produce a benchmark ET dataset. The dataset was produced primarily to support the intercomparison and evaluation of the OpenET satellite-based remote sensing ET (RSET) models and could also be used to evaluate ET data from other models and approaches. OpenET is a web-based service that makes field-delineated and pixel-level ET estimates from well-established RSET models readily available to water managers, agricultural producers, and the public. The benchmark dataset is composed of flux and meteorological data from a variety of …

Diversity, Distribution, And Methodological Considerations Of Haemosporidian Infections Among Galliformes In Alaska, Faith De Amaral, Robert E. Wilson, Sarah A. Sonsthagen, Ravinder Sehgal

School of Natural Resources: Faculty Publications

Using samples spanning 10-degrees of latitude in Alaska, we provide the first comparative assessment of avian haemosporidia distribution of Arctic Alaska with subarctic host populations for four species of grouse and three species of ptarmigan (Galliformes). We found a high overall prevalence for at least one haemospordian genus (88%; N = 351/400), with spruce grouse (Canachites canadensis) showing the highest prevalence (100%; N = 54/ 54). Haemoproteus and Plasmodium lineages were only observed within grouse, while Leucocytozoon species were found within both grouse and ptarmigan. Further, different Leucocytozoon lineages were obtained from blood and tissue samples from the …

Assessing The Effectiveness Of Integrated Multi-Trophic Aquaculture For Growing West Coast Venus Clams, Avery Wallace

Theses

With demand for sustainable sources of seafood on the rise, California is looking to expand aquaculture with a focus on innovative culturing methods and use of native or resident species. Therefore, this study examined the potential for culturing native North American west coast venus clams (Chione californiensis and Chione undatella) using integrated multi-trophic aquaculture (IMTA). An ITMA approach was chosen because it is a culture method that uses species from different but functionally complementary trophic levels that have been found to reduce the potential negative effects of traditional monoculture. California sea cucumber (Parastichopus californicus) and the seaweeds red ogo (Gracilaria …

Developing Ecological Security Pattern For Coastal Wetlands Based On “Three-Line Integration” Spatial Strategy, Xiaowen Li, Liehui Zhi, Tiantian Ma, Zengli Liu, Baoshan Cui, Dongdong Shao, Yu Cao, Yonglin Mu

Bulletin of Chinese Academy of Sciences (Chinese Version)

Coastal wetlands function as key socioeconomic resources as well as ecological barriers for sustainable development in coastal regions. Although previous research and practices indicate that restoration of degraded wetlands needs combination with intact natural wetlands to achieve best integrated ecosystem services, this kind of integration is still lacking both in research and practice. In the past decades, increased land reclamation coupling with climate change (e.g. sea level rise) have led considerable coastal squeeze effects and intensified degradation and loss in coastal wetlands along Chinese coastline, restoration of damaged coastal wetlands is therefore urgently needed to enhance the overall ecological functions …

Burmese Pythons In Florida: A Synthesis Of Biology, Impacts, And Management Tools, Jacquelyn C. Guzy, Bryan G. Falk, Brian J. Smith, Johnd David Willson, Robert N. Reed, Nicholas G. Aumen, Michael L. Avery, Ian A. Bartoszek, Earl Campbell, Michael S. Cherkiss, Natalie M. Claunch, Andrea F. Currylow, Tylan Dean, Jeremy Dixon, Richard Engeman, Sarah Funck, Rebekah Gibble, Kodiak C. Hengstebeck, John S. Humphrey, Margaret E. Hunter, Jillian M. Josimovich, Jennifer Ketterlin, Michael Kirkland, Frank J. Mazzotti, Robert Mccleery, Melissa A. Miller, Matthew Mccollister, M. Rockwell Parker, Shannon E. Pittman, Michael Rochford, Christina Romagosa, Art Roybal, Ray W. Snow, Mckayla M. Spencer, J. Hardin Waddle, Any A. Yackel Adams, Kristen M. Hart

United States Department of Agriculture Wildlife Services: Staff Publications

Burmese pythons (Python molurus bivittatus) are native to southeastern Asia, however, there is an established invasive population inhabiting much of southern Florida throughout the Greater Everglades Ecosystem. Pythons have severely impacted native species and ecosystems in Florida and represent one of the most intractable invasive-species management issues across the globe. The difficulty stems from a unique combination of inaccessible habitat and the cryptic and resilient nature of pythons that thrive in the subtropical environment of southern Florida, rendering them extremely challenging to detect. Here we provide a comprehensive review and synthesis of the science relevant to managing invasive …

Making Minnesota A Model For Energy Storage Policy, Max Meyer

Minnesota Journal of Law, Science & Technology

No abstract provided.

Habitat Fragmentation Reduces Survival And Drives Source–Sink Dynamics For A Large Carnivore, Anna C. Nisi, John F. Benson, Richard King, Christopher C. Wilmers

School of Natural Resources: Faculty Publications

Rigorous understanding of how environmental conditions impact population dynamics is essential for species conservation, especially in mixed-use landscapes where source–sink dynamics may be at play. Conservation of large carnivore populations in fragmented, human-dominated landscapes is critical for their long-term persistence. However, living in human-dominated landscapes comes with myriad costs, including direct anthropogenic mortality and sublethal energetic costs. How these costs impact individual fitness and population dynamics are not fully understood, partly due to the difficulty in collecting long-term demographic data for these species. Here, we analyzed an 11-year dataset on puma (Puma concolor) space use, mortality, and reproduction …

The Future Of Pandemics: Land Use Controls As Means Of Preventing Zoonotic Disease, Bailey Andree

Pace International Law Review

Zoonotic diseases are increasing in frequency as climate change worsens around the world, with the recent COVID-19 pandemic highlighting the inadequate mechanisms in place to counteract disease spread. This article reviews various zoonotic diseases and their patterns of spread, highlighting land use change as the key driver of disease to demonstrate the need for legal intervention. International land use law is a little-developed subsect of environmental law that holds the key to combating this disease spread, and this article proposes solutions through this legal lens. Land use techniques which may be used to combat disease spread include conservation laws, setback …

Boundary Spanning In The Context Of Stakeholder Engagement In Collaborative Water Management, Mark E. Burbach, Weston M. Eaton, Jodi L. Delozier

School of Natural Resources: Faculty Publications

Boundary spanners are individuals able to reach across organizational borders to build relationships and interconnections to help better manage complex problems. What is not clear, however, are the skills that allow boundary spanners to cross diverse scales, sectors, and organizations. To address this gap, we use a qualitative case study approach to examine evidence for how boundary spanning skills are implemented in the context of stakeholder engagement for addressing water challenges in agricultural settings. We employ a hybrid deductive-inductive thematic analysis approach to examine interview data collected with 25 stakeholder participants as well as direct observation of engagement behavior. Interview …

Assessing The Unionid Assemblage Of The Robert C. Byrd Pool, Ohio River, Ethan Hunter Bellamy

Theses, Dissertations and Capstones

Unionid mussels are the most imperiled taxa in the United States and are vastly understudied. The entire Robert C. Byrd (RCB) pool of the Ohio River is the study area. I selected sites from the 2019 and 2013 ORSANCO RCB pool assessments that utilize random site selection across the pool. I used SCUBA to survey and collect data on unionid diversity, reproduction, and habitat. I collected 1,083 individuals over 19 species in RCB pool. I compared results from RCB pool survey to two similar surveys conducted in Greenup Pool. Both richness and abundance in the Upper Section of Greenup Pool …

Leading Climate & Environmental Action In The San Diego Region, Tessa Tinkler, Eo Hanabusa, Emily Young, Darbi Berry, Connelly Meschen

Environment

Leading Climate & Environmental Action in the San Diego Region presents the state of environment-focused nonprofits in the San Diego region and their legacies that position them to continue impactful climate action. Findings in this report are synthesized from quarterly public opinion pollings (San Diego Residents Survey), surveys of 30 local environmental nonprofit leaders (Nonprofit Leaders Survey), the latest nonprofit data from the Internal Revenue Service (IRS), and data on foundation grants awarded to local nonprofits (Candid). The environmental nonprofit sector in the San Diego region is relatively small, but it has worked on the frontlines for many years to …

Characterizing The Vegetation And Effects Of Climate Change On Parris Island, A Sea Island Ecosystem, Cody Hart Goodson

Theses, Dissertations and Capstones

Coastal habitats provide many ecosystem services, protecting coastlines from storm surges and erosion, diminishing the effects of eutrophication, sequestering large amounts of carbon, and acting as vital wildlife habitat. Sea-level rise and increased storm surge intensity associated with climate change are increasingly disrupting coastal habitats. These disturbances can shift environmental gradients that drive the zonation of coastal vegetation types, driving habitat conversion. Monitoring coastal habitat conversion can improve our understanding of the dynamic effects of climate change on these landscapes. Therefore, our objectives for chapter 1 were to identify and describe the distributions of vegetation types present on Marine Corps …

Role Of Social Determinants Of Health In Differential Respiratory Exposure And Health Outcomes Among Children, Jagadeesh Puvvula, Jill A. Poole, Yeongjin Gwon, Eleanor G. Rogan, Jesse E. Bell

School of Natural Resources: Faculty Publications

Background Attributes defining the Social Determinants of Health (SDoH) are associated with disproportionate exposures to environmental hazards and differential health outcomes among communities. The dynamics between SDoH, disproportionate environmental exposures, and differential health outcomes are often specific to micro-geographic areas.

Methods This study focused on children less than 20 years of age who lived in Douglas County, Nebraska, during 2016–2019. To assess the role of SDoH in differential exposures, we evaluated the association between SDoH metrics and criteria pollutant concentrations and the association between SDoH and pediatric asthma exacerbations to quantify the role of SDoH in differential pediatric asthma outcomes. …

Panarchy Theory For Convergence, Shana M. Sundstrom, David G. Angeler, Jesse Bell, Michael J. Hayes, Jennifer Hodbod, Babak Jalalzadeh‑Fard, Rezaul Mahmood, Elizabeth Vanwormer, Craig R. Allen

School of Natural Resources: Faculty Publications

Coping with surprise and uncertainty resulting from the emergence of undesired and unexpected novelty or the sudden reorganization of systems at multiple spatiotemporal scales requires both a scientific process that can incorporate diverse expertise and viewpoints, and a scientific framework that can account for the structure and dynamics of interacting social-ecological systems (SES) and the inherent uncertainty of what might emerge in the future. We argue that combining a convergence scientific process with a panarchy framework provides a pathway for improving our understanding of, and response to, emergence. Emergent phenomena are often unexpected (e.g., pandemics, regime shifts) and can be …

Author Correction: Gloria - A Globally Representative Hyperspectral In Situ Dataset For Optical Sensing Of Water Quality, Moritz K. Lehmann, Et Al.

School of Natural Resources: Faculty Publications

Correction to: Scientific Data https://doi.org/10.1038/s41597-023-01973-y, published online 16 February 2023.

An author of the paper was omitted in the original version (Ted Conroy, University of Waikato, New Zealand). This has been corrected in the pdf and HTML versions of the paper, and the associated metadata.

The Search Behavior Of Terrestrial Mammals, M. Noonan, C. Martinez-Garcia, C. H. Fleming, A. R. Little Et. Al

School of Natural Resources: Faculty Publications

No abstract provided.

Impacts Of Algal Blooms And Microcystins In Fish On Small-Scale Fishers In Winam Gulf, Lake Victoria: Implications For Health And Livelihood, Amber F. Roegner, Jessica R. Corman, Lewis M. Sitoki, Zachary A. Kwena, Zachary Ogari, Jared Babu Miruka, Ame Xiong, Chelsea Weirich, Christopher Mulanda Aura, Todd Rex Miller

School of Natural Resources: Faculty Publications

Lake Victoria, bordered by Kenya, Tanzania, and Uganda, provides one of the largest freshwater fisheries in the world and supports millions in small-scale fishing communities. Historical environmental change, including population growth, nutrient loading, introduced invasive species, and rising temperatures, has resulted in eutrophication and persistent cyanobacterial harmful algae blooms (cyanoHABs) over recent decades, particularly in the shallower gulfs, bays, and inlets. CyanoHABs impact fisheries and food web dynamics and compromise food and water security for nearshore fisher populations. In this study, we examine the socialecological impact of freshwater blooms on fisher health in one of these eutrophic regions, Winam Gulf …

Panta Rhei Benchmark Dataset: Socio-Hydrological Data Of Paired Events Of Floods And Droughts, Heidi Kreibich, Elliot Wickham, Et Al.

School of Natural Resources: Faculty Publications

As the adverse impacts of hydrological extremes increase in many regions of the world, a better understanding of the drivers of changes in risk and impacts is essential for effective flood and drought risk management and climate adaptation. However, there is currently a lack of comprehensive, empirical data about the processes, interactions, and feedbacks in complex human–water systems leading to flood and drought impacts. Here we present a benchmark dataset containing socio-hydrological data of paired events, i.e. two floods or two droughts that occurred in the same area. The 45 paired events occurred in 42 different study areas and cover …

Taps Program Evaluation – Producers, Stephanie M. Kennedy, Mark E. Burbach

School of Natural Resources: Faculty Publications

No abstract provided.

Taps Program Evaluation – Non-Producers, Stephanie M. Kennedy, Mark E. Burbach

School of Natural Resources: Faculty Publications

No abstract provided.

Revisiting The Carbon–Biodiversity Connection, John Gamon

School of Natural Resources: Faculty Publications

This article is a Commentary on Schuldt et al., https://doi.org/10.1111/gcb.16697

The link between biodiversity and ecosystem function has long been a subject of intense interest and debate among biologists, going back to the time of Charles Darwin, whose ideas on species interactions presaged subsequent discussions of biodiversity and ecosystem function (Peterson et al., 1998). Since then, many considerations of community diversity have centered on the importance of species or functional diversity for maintaining system resilience in the face of disturbance, analogous to the way that interwoven threads maintain the function and integrity of fabric. While our language, concepts, and methods …

Drought Affects Sex Ratio And Growth Of Painted Turtles In A Long-Term Study In Nebraska, Larkin Powell, Ellen Dolph, Charrissa R. Neil

School of Natural Resources: Faculty Publications

Climate forecasts suggest the Great Plains of North America have increased risk of droughts during global warming. Environmental factors have potential to influence turtle populations in aquatic habitats through temperature-dependent sex determination and influences on food availability. Long-term studies are critical to evaluate the influence of climatic variation on turtles. We used a 12-year set of mark-recapture data collected from painted turtles (Chrysemys picta, n = 162) in a pond in Keith County, Nebraska during 2005–2016 to assess variation in sex ratio and growth dynamics. Southwest Nebraska experienced two periods of drought during our study (Palmer Hydrologic Drought Index [PHDI] …

Drought Influences Annual Survival Of Painted Turtles In Western Nebraska, Allyson N. Beard, Larkin Powell

School of Natural Resources: Faculty Publications

Aquatic habitats in the Great Plains of North America have increased risk of droughts under climate forecasts. Droughts have the potential to influence the population dynamics of pond turtles, and long-term studies are useful to assess the impact of climatic variation on turtles. We compiled twelve years of mark-recapture data for painted turtles (Chrysemys picta) captured in a pond in Keith County, Nebraska during 2005–2016 that included two periods of drought. We used a robust design analysis to investigate influences on population size, annual survival, temporary immigration, and capture probability. Estimates of the annual population size ranged from 92 (CI: …

Connecting Distinct Realms Along Multiple Dimensions: A Meta-Ecosystem Resilience Perspective, David G. Angeler, Jani Heino, Juan Rubio-Ríos, J. Jesús Casas

School of Natural Resources: Faculty Publications

Resilience research is central to confront the sustainability challenges to ecosystems and human societies in a rapidly changing world. Given that social-ecological problems span the entire Earth system, there is a critical need for resilience models that account for the connectivity across intricately linked ecosystems (i.e., freshwater, marine, terrestrial, atmosphere). We present a resilience perspective of meta-ecosystems that are connected through the flow of biota, matter and energy within and across aquatic and terrestrial realms, and the atmosphere. We demonstrate ecological resilience sensu Holling using aquatic-terrestrial linkages and riparian ecosystems more generally. A discussion of applications in riparian ecology and …

White-Tailed Deer (Odocoileus Virginianus) Fawn Survival And The Influence Of Landscape Characteristics On Fawn Predation Risk In The Southern Appalachian Mountains, Usa, Andrew R. Little, A. C. Edge, J. P. Rosenberger, C. J. Yates, C. H. Killmaster, K. L. Johannsen Et Al.

School of Natural Resources: Faculty Publications

No abstract provided.

Prevalence Of Hesperevax Sparsiflora Var. Brevifolia (Short-Leaved Evax) At Ocean Ranch, Humboldt County, California: Exploring The Effects Of Disturbance, Shelby Diquirco, Matthew Estrada, Alana T. Fraley, Alexander D. Smith

Environmental Science & Management Senior Capstones

The prevalence of special-status plants within a landscape can be an indicator of the ecological health of that site, and therefore inform restoration efforts and post-restoration monitoring. Hesperevax sparsiflora var. brevifolia (short-leaved evax) is a special status species found within the Ocean Ranch unit of Humboldt, California. A primary threat to native plant communities are invasive plant species. Coastal dune ecosystems are largely dominated by invasive species, including Ammophila arenaria (European beachgrass). To work towards the eradication of A. arenaria, the California Department of Fish and Wildlife utilized treatment combinations of herbicide and prescribed fire at Ocean Ranch in …

Evaluating Benthic Macroinvertebrate Populations In Response To Scouring Events In The Trinity River, Ca, Liam Hay, Michael W. O'Neil, Chloe Pieper-Wasem

Environmental Science & Management Senior Capstones

River systems across California have been impacted by appurtenant structures such as dams and diversions. These structures have had an adverse impact on Benthic invertebrate (BMI) communities by regulating river systems and changing the natural hydraulic pulses that follow seasonal precipitation. Benthic invertebrates are a critical food resource for salmonids and serve as an indicator of ecosystem health. Our study was interested in seeing the effects of scouring events on BMI in the Trinity River of Trinity County, C.A. Following a large precipitation event that occurred in the region in December 2022, an influx of water entered the river through …

Labile Carbon And Soil Texture Control Nitrogen Transformation In Deep Vadose Zone, Lidong Li, Jordan Shields, Daniel D. Snow, Michael Kaiser, Arindam Malakar

Daugherty Water for Food Global Institute: Faculty Publications

Understanding transient nitrogen (N) storage and transformation in the deep vadose zone is critical for controlling groundwater contamination by nitrate. The occurrence of organic and inorganic forms of carbon (C) and nitrogen and their importance in the deep vadose zone is not well characterized due to difficulty in sampling and the limited number of studies. We sampled and characterized these pools beneath 27 croplands with different vadose zone thicknesses (6–45 m).We measured nitrate and ammonium in different depths for the 27 sites to evaluate inorganic N storage. We measured total Kjeldahl nitrogen (TKN), hot-water extractable organic carbon (EOC), soil organic …