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Brigham Young University

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Articles 1681 - 1710 of 2906

Full-Text Articles in Physical Sciences and Mathematics

Evaluating Models Of Latent Document Semantics In The Presence Of Ocr Errors, Daniel D. Walker, William B. Lund, Eric K. Ringger Jan 2010

Evaluating Models Of Latent Document Semantics In The Presence Of Ocr Errors, Daniel D. Walker, William B. Lund, Eric K. Ringger

Faculty Publications

Models of latent document semantics such as the mixture of multinomials model and Latent Dirichlet Allocation have received substantial attention for their ability to discover topical semantics in large collections of text. In an effort to apply such models to noisy optical character recognition (OCR) text output, we endeavor to understand the effect that character-level noise can have on unsupervised topic modeling. We show the effects both with document-level topic analysis (document clustering) and with word-level topic analysis (LDA) on both synthetic and real-world OCR data. As expected, experimental results show that performance declines as word error rates increase. Common …

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Differences In The Mechanism Of Collagen Lattice Contraction By Myofibroblasts And Smooth Muscle Cells, J. C. Dallon, H P. Ehrlich Jan 2010

Differences In The Mechanism Of Collagen Lattice Contraction By Myofibroblasts And Smooth Muscle Cells, J. C. Dallon, H P. Ehrlich

Faculty Publications

Both rat derived vascular smooth muscle cells (SMC) and human myofibroblasts contain $\alpha$ smooth muscle actin (SMA), but they utilize different mechanisms to contract populated collagen lattices (PCLs). The difference is in how the cells generate the force that contracts the lattices. Human dermal fibroblasts transform into myofibroblasts, expressing $\alpha$-SMA within stress fibers, when cultured in lattices that remain attached to the surface of a tissue culture dish. When attached lattices are populated with rat derived vascular SMC, the cells retain their vascular SMC phenotype. Comparing the contraction of attached PCLs when they are released from the culture dish on …

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Multiscale Modeling Of Cellular Systems In Biology, J. C. Dallon Jan 2010

Multiscale Modeling Of Cellular Systems In Biology, J. C. Dallon

Faculty Publications

Here we review eight different multiscale modeling efforts dealing with cellular systems in biology. The first two models focus on collagen based tissue, one dealing with the biomechanical properties of the tissue and the other focusing on how the dermis is remodeled in scar tissue formation. The next two models deal with first avascular tumor growth and then the role of the vasculature in tumor growth. We then consider two models which use the Immersed Boundary method to model tissue properties and cell-cell adhesion. Finally we conclude with two models with treatments of the Cellular Potts Model. The first models …

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Automatic Generation Of Music For Inducing Emotive Response, Tony R. Martinez, Kristine Monteith, Dan A. Ventura Jan 2010

Automatic Generation Of Music For Inducing Emotive Response, Tony R. Martinez, Kristine Monteith, Dan A. Ventura

Faculty Publications

We present a system that generates original music designed to match a target emotion. It creates n-gram models, Hidden Markov Models, and other statistical distributions based on musical selections from a corpus representing a given emotion and uses these models to probabilistically generate new musical selections with similar emotional content. This system produces unique and often remarkably musical selections that tend to match a target emotion, performing this task at a level that approaches human competency for the same task.

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Directable Weathering Of Concave Rock Using Curvature Estimation, Matthew Beardall, Joseph Butler, Mckay Farley, Michael D. Jones Jan 2010

Directable Weathering Of Concave Rock Using Curvature Estimation, Matthew Beardall, Joseph Butler, Mckay Farley, Michael D. Jones

Faculty Publications

We address the problem of directable weathering of exposed concave rock for use in computer-generated animation or games. Previous weathering models that admit concave surfaces are computationally inefficient and difficult to control. In nature, the spheroidal and cavernous weathering rates depend on the surface curvature. Spheroidal weathering is fastest in areas with large positive mean curvature and cavernous weathering is fastest in areas with large negative mean curvature. We simulate both processes using an approximation of mean curvature on a voxel grid. Both weathering rates are also influenced by rock durability. The user controls rock durability by editing a durability …

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Equalization Of Loudspeakers And Enclosed Sound Fields, Xi Chen Dec 2009

Equalization Of Loudspeakers And Enclosed Sound Fields, Xi Chen

Theses and Dissertations

Equalization of loudspeakers and enclosed sound fields has been a topic of considerable interest for decades. Confusion has often arisen among audio professionals regarding the feasibility of simultaneously equalizing a loudspeaker and the enclosed field (i.e., the “room”) it excites. Because of frustrations encountered in such efforts, some have advocated abandoning simultaneous equalization altogether. This dissertation discusses the drawbacks of this approach as well as traditional in situ equalization methods. It demonstrates that many problems with traditional equalization stem from the use of measured acoustic pressure at a discrete point in a sound field as the system output. The dissertation …

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Carbon Coated Tellurium For Optical Data Storage, Jonathan D. Abbott Dec 2009

Carbon Coated Tellurium For Optical Data Storage, Jonathan D. Abbott

Theses and Dissertations

A highly durable optical disk has been developed for data archiving. This optical disk uses tellurium as the write layer and carbon as a dielectric and oxidation prevention layer. The sandwich style CTeC film was deposited on polycarbonate and silicon substrates by plasma sputtering. These films were then characterized with SEM, TEM, EELS, ellipsometry, ToF-SIMS, etc, and were tested for writability and longevity. Results show the films were uniform in physical structure, are stable, and able to form permanent pits. Data was written to a disk and successfully read back in a commercial DVD drive.

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Measured Optical Constants Of Copper From 10 Nm To 35 Nm, David D. Allred, Nicole Brimhall, Nicholas Herrick, Justin Peatross, R. Steven Turley, Michael Ware Dec 2009

Measured Optical Constants Of Copper From 10 Nm To 35 Nm, David D. Allred, Nicole Brimhall, Nicholas Herrick, Justin Peatross, R. Steven Turley, Michael Ware

Faculty Publications

We use laser high-order harmonics and a polarization-ratioreflectance technique to determine the optical constants of copper and oxidized copper in the wavelength range 10-35 nm. This measurement resolves previously conflicting data sets, where disagreement on optical constants of copper in the extreme ultraviolet most likely arises from inadvertent oxidation of samples before measurement.

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Progress Toward The Total Synthesis Of Lyconadin A, Yu Zhang Dec 2009

Progress Toward The Total Synthesis Of Lyconadin A, Yu Zhang

Theses and Dissertations

Lyconadin A is a pentacyclic Lycopodium alkaloid isolated from the club moss Lycopodium complanatum with antitumor properties. We have developed a novel 7-exo/6-exo acyl radical cascade cyclization as a method of making the bicyclo[5.4.0]undecane ring system of lyconadin A. The model products are trans-fused ring systems, while a cis-fused ring system is needed in lyconadin A. We have discovered a method to convert the trans-fused model cascade cyclization product into the desired cis isomer. Based on Donohoe's pyridone synthesis, we developed a method for the construction of 5-alkyl and 3,5-dialkyl-6-carbomethoxy-2-pyridones, the former of which …

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Analysis Of Electromagnetic And Seismic Geophysical Methods For Investigating Shallow Sub-Surface Hydrogeology, Eric M. Parks Dec 2009

Analysis Of Electromagnetic And Seismic Geophysical Methods For Investigating Shallow Sub-Surface Hydrogeology, Eric M. Parks

Theses and Dissertations

An integrated electromagnetic (EM) and seismic geophysical study was performed to evaluate non-invasive approaches to estimate depth to shallow groundwater in arid environments with elevated soil salinity where the installation of piezometers would be impractical or prohibited. Both methods were tested in two study areas (semi-arid and arid respectively), one in Palmyra, Utah, USA near the shore of Utah Lake where groundwater is shallow and unconfined in relatively homogeneous lacustrine sediments. The other area is Carson Slough, Nevada, USA near Ash Meadows National Wildlife Refuge in Amargosa Valley. The area is underlain by valley fill, with generally variable shallow depths …

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Bisecting Document Clustering Using Model-Based Methods, Aaron Samuel Davis Dec 2009

Bisecting Document Clustering Using Model-Based Methods, Aaron Samuel Davis

Theses and Dissertations

We all have access to large collections of digital text documents, which are useful only if we can make sense of them all and distill important information from them. Good document clustering algorithms that organize such information automatically in meaningful ways can make a difference in how effective we are at using that information. In this paper we use model-based document clustering algorithms as a base for bisecting methods in order to identify increasingly cohesive clusters from larger, more diverse clusters. We specifically use the EM algorithm and Gibbs Sampling on a mixture of multinomials as the base clustering algorithms …

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Interactive Football Summarization, Brandon B. Moon Dec 2009

Interactive Football Summarization, Brandon B. Moon

Theses and Dissertations

Football fans do not have the time to watch every game in its entirety and need an effective solution that summarizes them the story of the game. Human-generated summaries are often too short, requiring time and resources to create. We utilize the advantages of Interactive TV to create an automatic football summarization service that is cohesive, provides context, covers the necessary plays, and is concise. First, we construct a degree of interest function that ranks each play based on detailed, play-by-play game events as well as viewing statistics collected from an interactive viewing environment. This allows us to select the …

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Fused Visible And Infrared Video For Use In Wilderness Search And Rescue, Dennis Eggett, Michael A. Goodrich, Bryan S. Morse, Nathan Rasmussen Dec 2009

Fused Visible And Infrared Video For Use In Wilderness Search And Rescue, Dennis Eggett, Michael A. Goodrich, Bryan S. Morse, Nathan Rasmussen

Faculty Publications

Mini Unmanned Aerial Vehicles (mUAVs) have the potential to assist Wilderness Search and Rescue groups by providing a bird’s eye view of the search area. This paper proposes a method for augmenting visible-spectrum searching with infrared sensing in order to make use of thermal search clues. It details a method for combining the color and heat information from these two modalities into a single fused display to reduce needed screen space for remote field use. To align the video frames for fusion, a method for simultaneously pre-calibrating the intrinsic and extrinsic parameters of the cameras and their mount using a …

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Noninvasive Estimation Of Pulmonary Artery Pressure Using Heart Sound Analysis, Aaron W. Dennis Dec 2009

Noninvasive Estimation Of Pulmonary Artery Pressure Using Heart Sound Analysis, Aaron W. Dennis

Theses and Dissertations

Right-heart catheterization is the most accurate method for estimating pulmonary artery pressure (PAP). Because it is an invasive procedure it is expensive, exposes patients to the risk of infection, and is not suited for long-term monitoring situations. Medical researchers have shown that PAP influences the characteristics of heart sounds. This suggests that heart sound analysis is a potential noninvasive solution to the PAP estimation problem. This thesis describes the development of a prototype system, called PAPEr, which estimates PAP noninvasively using heart sound analysis. PAPEr uses patient data with machine learning algorithms to build models of how PAP affects heart …

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An Adaptive Bayesian Approach To Dose-Response Modeling, Thomas J. Leininger Dec 2009

An Adaptive Bayesian Approach To Dose-Response Modeling, Thomas J. Leininger

Theses and Dissertations

Clinical drug trials are costly and time-consuming. Bayesian methods alleviate the inefficiencies in the testing process while providing user-friendly probabilistic inference and predictions from the sampled posterior distributions, saving resources, time, and money. We propose a dynamic linear model to estimate the mean response at each dose level, borrowing strength across dose levels. Our model permits nonmonotonicity of the dose-response relationship, facilitating precise modeling of a wider array of dose-response relationships (including the possibility of toxicity). In addition, we incorporate an adaptive approach to the design of the clinical trial, which allows for interim decisions and assignment to doses based …

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Open Access Fiber To The Home Networking, Roger E. Timmerman Dec 2009

Open Access Fiber To The Home Networking, Roger E. Timmerman

Theses and Dissertations

The concept of open-access networks appeals to communities that want to invest in and improve their access to modern telecommunications services. By investing in, or building their own open-access telecommunications networks, communities can create an environment where several telecommunications service providers can co-exist on a common open-access infrastructure. This model promotes innovation and competition among several smaller service providers rather than having a monopoly or oligopoly from those companies that can afford the investment of infrastructure in the community. This research provides an analysis of two large open-access fiber-to-the-home networks in Utah to determine a set of recommendations and best-practices …

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Gpu-Accelerated Hierarchical Dense Correspondence For Real-Time Aerial Video Processing, Stephen Cluff, Bryan S. Morse, Jonathan D. Cohen, Mark Duchaineau Dec 2009

Gpu-Accelerated Hierarchical Dense Correspondence For Real-Time Aerial Video Processing, Stephen Cluff, Bryan S. Morse, Jonathan D. Cohen, Mark Duchaineau

Faculty Publications

Video from aerial surveillance can provide a rich source of data for many applications and can be enhanced for display and analysis through such methods as mosaic construction, super-resolution, and mover detection. All of these methods require accurate frame-to-frame registration, which for live use must be performed in real time. In many situations, scene parallax may make alignment using global transformations impossible or error-prone, limiting the performance of subsequent processing and applications. For these cases, dense (per-pixel) correspondence is required, but this can be computationally prohibitive. This paper presents a hierarchical dense correspondence algorithm designed for implementation on graphics processing …

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Using Operator Teams For Supervisory Control, Jonathan M. Whetten Nov 2009

Using Operator Teams For Supervisory Control, Jonathan M. Whetten

Theses and Dissertations

Robots and other automated systems have potential use in many different fields. As the scope of robot applications that robots are used for increases, there is a growing desire to have human operators manage multiple robots. Typical methods of enabling operators to multi-task in this way involve some combination of user interfaces that support human cognition and advanced robot autonomy. Our research explores a complementary method of managing multiple robots by utilizing operator teams. The evidence suggests that for appropriate task scenarios, two cooperating operators can be more than twice as effective as one operator working alone.

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Dinosaurian Faunas Of The Cedar Mountain Formation And La-Icp-Ms Detrital Zircon Ages For Three Stratigraphic Sections, Hirotsugu Mori Nov 2009

Dinosaurian Faunas Of The Cedar Mountain Formation And La-Icp-Ms Detrital Zircon Ages For Three Stratigraphic Sections, Hirotsugu Mori

Theses and Dissertations

The Cedar Mountain Formation contains the most diverse record of Early Cretaceous dinosaurs in the western hemisphere. However, analyses of its faunas have been hindered because 1) most taxa are based on incomplete/fragmentary materials or incomplete descriptions, 2) most sites and some horizons preserve few taxa, and 3) the stratigraphy and geochronology are poorly understood. To help resolve these stratigraphic and correlation problems U-Pb LA-ICP-MS detrital zircon ages were obtained at significant sites and horizons. These dates indicate all sites at or near the base of the formation are no older than 122 to 124 Ma, thus all basal stratigraphic …

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An Empirical Study Of Instance Hardness, Michael Reed Smith Nov 2009

An Empirical Study Of Instance Hardness, Michael Reed Smith

Theses and Dissertations

Most widely accepted measures of performance for learning algorithms, such as accuracy and area under the ROC curve, provide information about behavior at the data set level. They say nothing about which instances are misclassified, whether two learning algorithms with the same classification accuracy on a data set misclassify the same instances, or whether there are instances misclassified by all learning algorithms. These questions about behavior at the instance level motivate our empirical analysis of instance hardness, a measure of expected classification accuracy for an instance. We analyze the classification of 57 data sets using 9 learning algorithms. Of …

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Hokua – A Wavelet Method For Audio Fingerprinting, Steven S. Lutz Nov 2009

Hokua – A Wavelet Method For Audio Fingerprinting, Steven S. Lutz

Theses and Dissertations

In recent years, multimedia identification has become important as the volume of digital media has dramatically increased. With music files, one method of identification is audio fingerprinting. The underlying method for most algorithms is the Fourier transform. However, due to a lack of temporal resolution, these algorithms rely on the short-time Fourier transform. We propose an audio fingerprinting algorithm that uses a wavelet transform, which has good temporal resolution. In this thesis, we examine the basics of certain topics that are needed in understanding audio fingerprinting techniques. We also look at a brief history of work done in this field. …

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Growth And Geodesics Of Thompson's Group F, Jennifer L. Schofield Nov 2009

Growth And Geodesics Of Thompson's Group F, Jennifer L. Schofield

Theses and Dissertations

In this paper our goal is to describe how to find the growth of Thompson's group F with generators a and b. Also, by studying elements through pipe systems, we describe how adding a third generator c affects geodesic length. We model the growth of Thompson's group F by producing a grammar for reduced pairs of trees based on Blake Fordham's tree structure. Then we change this grammar into a system of equations that describes the growth of Thompson's group F and simplify. To complete our second goal, we present and discuss a computer program that has led to some …

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Synthesis And Evaluation Of N6,5'-Bis-Ureido-5'-Amino-5'-Deoxyadenosine Derivatives: Novel Nucleosides With Antiproliferative And Protein Kinase Binding Activities, Marcelio Oliveira Nov 2009

Synthesis And Evaluation Of N6,5'-Bis-Ureido-5'-Amino-5'-Deoxyadenosine Derivatives: Novel Nucleosides With Antiproliferative And Protein Kinase Binding Activities, Marcelio Oliveira

Theses and Dissertations

A new series of N6,5'-bis-ureido-5'-amino-5'-deoxyadenosine derivatives was prepared and evaluated for anticancer activities using the NCI 60 panel of human cancers. Certain of the derivatives showed promising activities (low micromolar GI50's) against several of the representative cancers. These included cell lines from the following general cell types in the NCI 60: Leukemia, Breast, Central Nervous System, Non-Small Cell Lung, Ovarian, Prostate, Renal, and Colon cancers. Select compounds were also screened for their affinities for protein kinases. The synthesis of the compounds was straightforward and involved N6 acylation with arylisocyanates, preceded by activation and nucleophilic substitution of the 5'-position to give …

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Feature-Based Interactive Terrain Sketching, Daniel B. Adams Nov 2009

Feature-Based Interactive Terrain Sketching, Daniel B. Adams

Theses and Dissertations

Procedural generation techniques are able to quickly and cheaply produce large areas of terrain. However, these techniques produce results that are not easily directable and often require artists to edit the results by hand to achieve the desired layout. This paper proposes a sketch-based system for controlling fractal terrain that allows for a wide variety of terrain feature types. Artists sketch features rather than constrained points or elevations. The system is interactive, provides quick on-demand previews of the terrain, and allows for iterative design modifications. Interaction between features is handled in a realistic fashion. An arbitrary vertex insertion order midpoint …

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A La-Icpms Sr Isotope And Trace Element Study Of Plagioclase And Clinopyroxene Of The Higganum Dike, Connecticut: Determining The Magma Source Of The Central Atlantic Magmatic Province, Caprise Steadman Harper Nov 2009

A La-Icpms Sr Isotope And Trace Element Study Of Plagioclase And Clinopyroxene Of The Higganum Dike, Connecticut: Determining The Magma Source Of The Central Atlantic Magmatic Province, Caprise Steadman Harper

Theses and Dissertations

The Higganum dike of Connecticut is one of the earliest basaltic dikes of the Central Atlantic Magmatic province and is geochemically representative of the widespread low-Ti basaltic lavas (~1 wt % TiO2) that make up the majority of the province in North America. Liquid compositions calculated from Cr-rich clinopyroxene cores from the Higganum dike are significantly more primitive than the bulk rock with average Mg# s of 0.63 compared to the Higganum dike which has Mg #'s ~ 0.55. However, the negative Nb and positive Pb anomalies that are seen in trace element patterns of the low-Ti group are also …

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Parameter Estimation For The Lognormal Distribution, Brenda Faith Ginos Nov 2009

Parameter Estimation For The Lognormal Distribution, Brenda Faith Ginos

Theses and Dissertations

The lognormal distribution is useful in modeling continuous random variables which are greater than or equal to zero. Example scenarios in which the lognormal distribution is used include, among many others: in medicine, latent periods of infectious diseases; in environmental science, the distribution of particles, chemicals, and organisms in the environment; in linguistics, the number of letters per word and the number of words per sentence; and in economics, age of marriage, farm size, and income. The lognormal distribution is also useful in modeling data which would be considered normally distributed except for the fact that it may be more …

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Classifying Sentence-Based Summaries Of Web Documents, Yiu-Kai D. Ng, Maria Soledad Pera Nov 2009

Classifying Sentence-Based Summaries Of Web Documents, Yiu-Kai D. Ng, Maria Soledad Pera

Faculty Publications

Text classification categorizes Web documents in large collections into predefined classes based on their contents. Unfortunately, the classification process can be time-consuming and users are still required to spend considerable amount of time scanning through the classified Web documents to identify the ones that satisfy their information needs. In solving this problem, we first introduce CorSum, an extractive single-document summarization approach, which is simple and effective in performing the summarization task, since it only relies on word similarity to generate high-quality summaries. Hereafter, we train a Naïve Bayes classifier on CorSum-generated summaries and verify the classification accuracy using the summaries …

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Chemalign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties, Hyrum Carroll, Mark J. Clement, Quinn O. Snell, David Mcclellan Nov 2009

Chemalign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties, Hyrum Carroll, Mark J. Clement, Quinn O. Snell, David Mcclellan

Faculty Publications

We present a new algorithm, ChemAlign, that uses physicochemical properties and secondary structure elements to create biologically relevant multiple sequence alignments (MSAs). Additionally, we introduce the Physicochemical Property Difference (PPD) score for the evaluation of MSAs. This score is the normalized difference of physicochemical property values between a calculated and a reference alignment. It takes a step beyond sequence similarity and measures characteristics of the amino acids to provide a more biologically relevant metric. ChemAlign is able to produce more biologically correct alignments and can help to identify potential drug docking sites.

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Mcc: A Runtime Verification Tool For Mcapi User Applications, Eric G. Mercer, Ganesh Gopalakrishnan, Jim Holt, Subodh Sharma Nov 2009

Mcc: A Runtime Verification Tool For Mcapi User Applications, Eric G. Mercer, Ganesh Gopalakrishnan, Jim Holt, Subodh Sharma

Faculty Publications

We present a dynamic verification tool MCC for Multicore Communication API applications – a new API for communication among cores. MCC systematically explores all relevant interleavings of an MCAPI application using a tailormade dynamic partial order reduction algorithm (DPOR). Our contributions are (i) a way to model the non-overtaking message matching relation underlying MCAPI calls with a high level algorithm to effect DPOR for MCAPI that controls the lower level details so that the intended executions happen at runtime; and (ii) a list of default safety properties that can be utilized in the process of verification. To our knowledge, this …

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Isotopic Evaluation Of Carbon Dioxide In Soil Gas In Utah For A More Accurate Input Variable In Groundwater Age Determining Models, Rachelle Hart Oct 2009

Isotopic Evaluation Of Carbon Dioxide In Soil Gas In Utah For A More Accurate Input Variable In Groundwater Age Determining Models, Rachelle Hart

Theses and Dissertations

In order to achieve a more accurate input value for groundwater age determining models, δ13CVPDB values for soil gas were evaluated at 50 cm depths in locations throughout Utah in order to define correlations between δ13C and environmental parameters. 16 sites were chosen that exploited large changes in elevation and latitude which provided variations in climate, precipitation, plant community, etc. Gas samples were collected over 1-1½ years, and soil samples were collected at depth during installations. Field and laboratory studies were also used to evaluate CO2 and δ13C change with depth. It was discovered that in mountainous recharge areas, the …

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