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Articles 1321 - 1350 of 5954

Full-Text Articles in Physical Sciences and Mathematics

Analysis Of Subtelomeric Rextal Assemblies Using Quast, Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, Harold Riethman Jan 2021

Analysis Of Subtelomeric Rextal Assemblies Using Quast, Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao, Harold Riethman

Computer Science Faculty Publications

Genomic regions of high segmental duplication content and/or structural variation have led to gaps and misassemblies in the human reference sequence, and are refractory to assembly from whole-genome short-read datasets. Human subtelomere regions are highly enriched in both segmental duplication content and structural variations, and as a consequence are both impossible to assemble accurately and highly variable from individual to individual. Recently, we developed a pipeline for improved region-specific assembly called Regional Extension of Assemblies Using Linked-Reads (REXTAL). In this study, we evaluate REXTAL and genome-wide assembly (Supernova) approaches on 10X Genomics linked-reads data sets partitioned and barcoded using the …

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Recognizing Figure Labels In Patents, Ming Gong, Xin Wei, Diane Oyen, Jian Wu, Martin Gryder Jan 2021

Recognizing Figure Labels In Patents, Ming Gong, Xin Wei, Diane Oyen, Jian Wu, Martin Gryder

Computer Science Faculty Publications

Scientific documents often contain significant information in figures. The United States Patent and Trademark Office (USPTO) awards thousands of patents each week, with each patent containing on the order of a dozen figures. The information conveyed by these figures typically include a drawing or diagram, a label, caption and reference text within the document. Yet associating the short bits of text to the figure is challenging when labels are embedded within the figure, as they typically are in patents. Using patents as a testbench, this paper highlights an open challenge in analyzing all of the information presented in scientific/technical documents …

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Automatic Metadata Extraction Incorporating Visual Features From Scanned Electronic Theses And Dissertations, Muntabir Hasan Choudhury, Himarsha R. Jayanetti, Jian Wu, William A. Ingram, Edward A. Fox Jan 2021

Automatic Metadata Extraction Incorporating Visual Features From Scanned Electronic Theses And Dissertations, Muntabir Hasan Choudhury, Himarsha R. Jayanetti, Jian Wu, William A. Ingram, Edward A. Fox

Computer Science Faculty Publications

Electronic Theses and Dissertations (ETDs) contain domain knowledge that can be used for many digital library tasks, such as analyzing citation networks and predicting research trends. Automatic metadata extraction is important to build scalable digital library search engines. Most existing methods are designed for born-digital documents, so they often fail to extract metadata from scanned documents such as ETDs. Traditional sequence tagging methods mainly rely on text-based features. In this paper, we propose a conditional random field (CRF) model that combines text-based and visual features. To verify the robustness of our model, we extended an existing corpus and created a …

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Extractive Research Slide Generation Using Windowed Labeling Ranking, Athar Sefid, Prasenjit Mitra, Jian Wu, C. Lee Giles Jan 2021

Extractive Research Slide Generation Using Windowed Labeling Ranking, Athar Sefid, Prasenjit Mitra, Jian Wu, C. Lee Giles

Computer Science Faculty Publications

Presentation slides generated from original research papers provide an efficient form to present research innovations. Manually generating presentation slides is labor-intensive. We propose a method to automatically generates slides for scientific articles based on a corpus of 5000 paper-slide pairs compiled from conference proceedings websites. The sentence labeling module of our method is based on SummaRuNNer, a neural sequence model for extractive summarization. Instead of ranking sentences based on semantic similarities in the whole document, our algorithm measures the importance and novelty of sentences by combining semantic and lexical features within a sentence window. Our method outperforms several baseline methods …

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Em Estimation For Zero- And K-Inflated Poisson Regression Model, Monika Arora, N. Rao Chaganty Jan 2021

Em Estimation For Zero- And K-Inflated Poisson Regression Model, Monika Arora, N. Rao Chaganty

Mathematics & Statistics Faculty Publications

Count data with excessive zeros are ubiquitous in healthcare, medical, and scientific studies. There are numerous articles that show how to fit Poisson and other models which account for the excessive zeros. However, in many situations, besides zero, the frequency of another count k tends to be higher in the data. The zero- and k-inflated Poisson distribution model (ZkIP) is appropriate in such situations The ZkIP distribution essentially is a mixture distribution of Poisson and degenerate distributions at points zero and k. In this article, we study the fundamental properties of this mixture distribution. Using stochastic representation, we …

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Systematizing Confidence In Open Research And Evidence (Score), Nazanin Alipourfard, Beatrix Arendt, Daniel M. Benjamin, Noam Benkler, Michael Bishop, Mark Burstein, Martin Bush, James Caverlee, Yiling Chen, Chae Clark, Anna Dreber Almenberg, Timothy M. Errington, Fiona Fidler, Nicholas Fox, Aaron Frank, Hannah Fraser, Scott Friedman, Ben Gelman, James Gentile, Jian Wu, Et Al., Score Collaboration Jan 2021

Systematizing Confidence In Open Research And Evidence (Score), Nazanin Alipourfard, Beatrix Arendt, Daniel M. Benjamin, Noam Benkler, Michael Bishop, Mark Burstein, Martin Bush, James Caverlee, Yiling Chen, Chae Clark, Anna Dreber Almenberg, Timothy M. Errington, Fiona Fidler, Nicholas Fox, Aaron Frank, Hannah Fraser, Scott Friedman, Ben Gelman, James Gentile, Jian Wu, Et Al., Score Collaboration

Computer Science Faculty Publications

Assessing the credibility of research claims is a central, continuous, and laborious part of the scientific process. Credibility assessment strategies range from expert judgment to aggregating existing evidence to systematic replication efforts. Such assessments can require substantial time and effort. Research progress could be accelerated if there were rapid, scalable, accurate credibility indicators to guide attention and resource allocation for further assessment. The SCORE program is creating and validating algorithms to provide confidence scores for research claims at scale. To investigate the viability of scalable tools, teams are creating: a database of claims from papers in the social and behavioral …

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Extraction And Evaluation Of Statistical Information From Social And Behavioral Science Papers, Sree Sai Teja Lanka, Sarah Rajtmajer, Jian Wu, C. Lee Giles Jan 2021

Extraction And Evaluation Of Statistical Information From Social And Behavioral Science Papers, Sree Sai Teja Lanka, Sarah Rajtmajer, Jian Wu, C. Lee Giles

Computer Science Faculty Publications

With substantial and continuing increases in the number of published papers across the scientific literature, development of reliable approaches for automated discovery and assessment of published findings is increasingly urgent. Tools which can extract critical information from scientific papers and metadata can support representation and reasoning over existing findings, and offer insights into replicability, robustness and generalizability of specific claims. In this work, we present a pipeline for the extraction of statistical information (p-values, sample size, number of hypotheses tested) from full-text scientific documents. We validate our approach on 300 papers selected from the social and behavioral science literatures, and …

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De Novo Prediction Of Drug–Target Interactions Using Laplacian Regularized Schatten P-Norm Minimization, Gaoyan Wu, Mengyun Yang, Yaohang Li, Jianxin Wang Jan 2021

De Novo Prediction Of Drug–Target Interactions Using Laplacian Regularized Schatten P-Norm Minimization, Gaoyan Wu, Mengyun Yang, Yaohang Li, Jianxin Wang

Computer Science Faculty Publications

In pharmaceutical sciences, a crucial step of the drug discovery is the identification of drug–target interactions (DTIs). However, only a small portion of the DTIs have been experimentally validated. Moreover, it is an extremely laborious, expensive, and time-consuming procedure to capture new interactions between drugs and targets through traditional biochemical experiments. Therefore, designing computational methods for predicting potential interactions to guide the experimental verification is of practical significance, especially for de novo situation. In this article, we propose a new algorithm, namely Laplacian regularized Schatten p-norm minimization (LRSpNM), to predict potential target proteins for novel drugs and potential drugs for …

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Parallel Anisotropic Unstructured Grid Adaptation, Christos Tsolakis, Nikos Chrisochoides, Michael A. Park, Adrien Loseille, Todd Michal Jan 2021

Parallel Anisotropic Unstructured Grid Adaptation, Christos Tsolakis, Nikos Chrisochoides, Michael A. Park, Adrien Loseille, Todd Michal

Computer Science Faculty Publications

Computational fluid dynamics (CFD) has become critical to the design and analysis of aerospace vehicles. Parallel grid adaptation that resolves multiple scales with anisotropy is identified as one of the challenges in the CFD Vision 2030 Study to increase the capacity and capability of CFD simulation. The study also cautions that computer architectures are undergoing a radical change, and dramatic increases in algorithm concurrency will be required to exploit full performance. This paper reviews four different methods to parallel anisotropic grid adaptation. They cover both ends of the spectrum: 1) using existing state-of-the-art software optimized for a single core and …

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Detecting Incentivized Review Groups With Co-Review Graph, Yubao Zhang, Shuai Hao, Haining Wang Jan 2021

Detecting Incentivized Review Groups With Co-Review Graph, Yubao Zhang, Shuai Hao, Haining Wang

Computer Science Faculty Publications

Online reviews play a crucial role in the ecosystem of nowadays business (especially e-commerce platforms), and have become the primary source of consumer opinions. To manipulate consumers’ opinions, some sellers of e-commerce platforms outsource opinion spamming with incentives (e.g., free products) in exchange for incentivized reviews. As incentives, by nature, are likely to drive more biased reviews or even fake reviews. Despite e-commerce platforms such as Amazon have taken initiatives to squash the incentivized review practice, sellers turn to various social networking platforms (e.g., Facebook) to outsource the incentivized reviews. The aggregation of sellers who …

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Understanding And Predicting Retractions Of Published Work, Sai Ajay Modukuri, Sarah Rajtmajer, Anna Cinzia Squicciarini, Jian Wu, C. Lee Giles Jan 2021

Understanding And Predicting Retractions Of Published Work, Sai Ajay Modukuri, Sarah Rajtmajer, Anna Cinzia Squicciarini, Jian Wu, C. Lee Giles

Computer Science Faculty Publications

Recent increases in the number of retractions of published papers reflect heightened attention and increased scrutiny in the scientific process motivated, in part, by the replication crisis. These trends motivate computational tools for understanding and assessment of the scholarly record. Here, we sketch the landscape of retracted papers in the Retraction Watch database, a collection of 19k records of published scholarly articles that have been retracted for various reasons (e.g., plagiarism, data error). Using metadata as well as features derived from full-text for a subset of retracted papers in the social and behavioral sciences, we develop a random forest classifier …

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Generation Of Excited Species In A Streamer Discharge, Shirshak K. Dhali Jan 2021

Generation Of Excited Species In A Streamer Discharge, Shirshak K. Dhali

Electrical & Computer Engineering Faculty Publications

At or near atmospheric pressure, most transient discharges, particularly in molecular gases or gas mixture containing molecular gases, result in a space charge dominated transport called a streamer discharge. The excited species generation in such discharges forms the basis for plasma chemistry in most technological applications. In this paper, we simulate the propagation of streamers in atmospheric pressure N2 to understand the energy partitioning in the formation of various excited species and compare the results to a uniform Townsend discharge. The model is fully two-dimensional with azimuthal symmetry. The results show a significantly larger fraction of the energy goes …

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Joint Modeling Of Rnaseq And Radiomics Data For Glioma Molecular Characterization And Prediction, Zeina A. Shboul, Norou Diawara, Arastoo Vossough, James Y. Chen, Khan M. Iftekharuddin Jan 2021

Joint Modeling Of Rnaseq And Radiomics Data For Glioma Molecular Characterization And Prediction, Zeina A. Shboul, Norou Diawara, Arastoo Vossough, James Y. Chen, Khan M. Iftekharuddin

Electrical & Computer Engineering Faculty Publications

RNA sequencing (RNAseq) is a recent technology that profiles gene expression by measuring the relative frequency of the RNAseq reads. RNAseq read counts data is increasingly used in oncologic care and while radiology features (radiomics) have also been gaining utility in radiology practice such as disease diagnosis, monitoring, and treatment planning. However, contemporary literature lacks appropriate RNA-radiomics (henceforth, radiogenomics) joint modeling where RNAseq distribution is adaptive and also preserves the nature of RNAseq read counts data for glioma grading and prediction. The Negative Binomial (NB) distribution may be useful to model RNAseq read counts data that addresses potential shortcomings. …

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The Resistive Barrier Discharge: A Brief Review Of The Device And Its Biomedical Applications, Mounir Laroussi Jan 2021

The Resistive Barrier Discharge: A Brief Review Of The Device And Its Biomedical Applications, Mounir Laroussi

Electrical & Computer Engineering Faculty Publications

This paper reviews the principles behind the design and operation of the resistive barrier discharge, a low temperature plasma source that operates at atmospheric pressure. One of the advantages of this plasma source is that it can be operated using either DC or AC high voltages. Plasma generated by the resistive barrier discharge has been used to efficiently inactivate pathogenic microorganisms and to destroy cancer cells. These biomedical applications of low temperature plasma are of great interest because in recent times bacteria developed increased resistance to antibiotics and because present cancer therapies often are accompanied by serious side effects. Low …

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Adenosine Triphosphate (Atp) As A Metric Of Microbial Biomass In Aquatic Systems: New Simplified Protocols, Laboratory Validation, And A Reflection On Data From The Literature, Alexander B. Bochdansky, Alison N. Stouffer, Nyjaee N. Washington Jan 2021

Adenosine Triphosphate (Atp) As A Metric Of Microbial Biomass In Aquatic Systems: New Simplified Protocols, Laboratory Validation, And A Reflection On Data From The Literature, Alexander B. Bochdansky, Alison N. Stouffer, Nyjaee N. Washington

OES Faculty Publications

The use of adenosine triphosphate (ATP) as a universal biomass indicator is built on the premise that ATP concentration tracks biomass rather than the physiological condition of cells. However, reportedly high variability in ATP in response to environmental conditions is the main reason the method has not found widespread application. To test possible sources of this variability, we used the diatom Thalassiosira weissflogii as a model and manipulated its growth rate through nutrient limitation and through exposure to three different temperatures (15°C, 20°C, and 25°C). We simplified the ATP protocol with hot‐water or chemical extraction methods, modified a commercially available …

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Salt Marsh Hydrogeology: A Review, Julia Guimond, Joseph Tamborski Jan 2021

Salt Marsh Hydrogeology: A Review, Julia Guimond, Joseph Tamborski

OES Faculty Publications

Groundwater–surface water exchange in salt marsh ecosystems mediates nearshore salt, nutrient, and carbon budgets with implications for biological productivity and global climate. Despite their importance, a synthesis of salt marsh groundwater studies is lacking. In this review, we summarize drivers mediating salt marsh hydrogeology, review field and modeling techniques, and discuss patterns of exchange. New data from a Delaware seepage meter study are reported which highlight small-scale spatial variability in exchange rates. A synthesis of the salt marsh hydrogeology literature reveals a positive relationship between tidal range and submarine groundwater discharge but not porewater exchange, highlighting the multidimensional drivers of …

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A Coastal N₂ Fixation Hotspot At The Cape Hatteras Front: Elucidating Spatial Heterogeneity In Diazotroph Activity Via Supervised Machine Learning, Corday R. Selden, P. Dreux Chappell, Sophie Clayton, Alfonso Macías-Tapia, Peter W. Bernhardt, Margaret R. Mulholland Jan 2021

A Coastal N₂ Fixation Hotspot At The Cape Hatteras Front: Elucidating Spatial Heterogeneity In Diazotroph Activity Via Supervised Machine Learning, Corday R. Selden, P. Dreux Chappell, Sophie Clayton, Alfonso Macías-Tapia, Peter W. Bernhardt, Margaret R. Mulholland

OES Faculty Publications

In the North Atlantic Ocean, dinitrogen (N2) fixation on the western continental shelf represents a significant fraction of basin‐wide nitrogen (N) inputs. However, the factors regulating coastal N2 fixation remain poorly understood, in part due to sharp physico‐chemical gradients and dynamic water mass interactions that are difficult to constrain via traditional oceanographic approaches. This study sought to characterize the spatial heterogeneity of N2 fixation on the western North Atlantic shelf, at the confluence of Mid‐ and South Atlantic Bight shelf waters and the Gulf Stream, in August 2016. Rates were quantified using the 15N2 …

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Using Heat To Trace Vertical Water Fluxes In Sediment Experiencing Concurrent Tidal Pumping And Groundwater Discharge, N. K. Leroux, B. L. Kurylyk, M. A. Briggs, D. J. Irvine, J. J. Tamborski, V. F. Bense Jan 2021

Using Heat To Trace Vertical Water Fluxes In Sediment Experiencing Concurrent Tidal Pumping And Groundwater Discharge, N. K. Leroux, B. L. Kurylyk, M. A. Briggs, D. J. Irvine, J. J. Tamborski, V. F. Bense

OES Faculty Publications

Heat has been widely applied to trace groundwater-surface water exchanges in inland environments, but it is infrequently applied in coastal sediment where head oscillations induce periodicity in water flux magnitude/direction and heat advection. This complicates interpretation of temperatures to estimate water fluxes. We investigate the convolution of thermal and hydraulic signals to assess the viability of using heat as a tracer in environments with tidal head oscillations superimposed on submarine groundwater discharge. We first generate sediment temperature and head time series for conditions ranging from no tide to mega-tidal using a numerical model (SUTRA) forced with periodic temperature and tidal …

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Toward Resolving Disparate Accounts Of The Extent And Magnitude Of Nitrogen Fixation In The Eastern Tropical South Pacific Oxygen Deficient Zone, Corday R. Selden, Margaret R. Mulholland, Brittany Widner, Peter Bernhardt, Amal Jayakumar Jan 2021

Toward Resolving Disparate Accounts Of The Extent And Magnitude Of Nitrogen Fixation In The Eastern Tropical South Pacific Oxygen Deficient Zone, Corday R. Selden, Margaret R. Mulholland, Brittany Widner, Peter Bernhardt, Amal Jayakumar

OES Faculty Publications

Examination of dinitrogen (N2) fixation in the Eastern Tropical South Pacific oxygen deficient zone has raised questions about the range of diazotrophs in the deep sea and their quantitative importance as a source of new nitrogen globally. However, technical considerations in the deployment of stable isotopes in quantifying N2 fixation rates have complicated interpretation of this research. Here, we report the findings of a comprehensive survey of N2 fixation within, above and below the Eastern Tropical South Pacific oxygen deficient zone. N2 fixation rates were measured using a robust 15N tracer method (bubble removal) …

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Microbially Induced Sedimentary Structures In Clastic Deposits: Implication For The Prospection For Fossil Life On Mars, Nora Noffke Jan 2021

Microbially Induced Sedimentary Structures In Clastic Deposits: Implication For The Prospection For Fossil Life On Mars, Nora Noffke

OES Faculty Publications

Abundant and well-preserved fossil microbenthos occurs in siliciclastic deposits of all Earth ages, from the early Archean to today. Studies in modern settings show how microbenthos responds to sediment dynamics by baffling and trapping, binding, biostabilization, and growth. Results of this microbial-sediment interaction are microbially induced sedimentary structures (MISS). Successful prospection for rich MISS occurrences in the terrestrial lithological record requires unraveling genesis and taphonomy of MISS, both of which are defined only by a narrow range of specific conditions. These conditions have to coincide with high detectability which is a function of outcrop quality, bedding character, and rock type. …

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The Renaissance Of Odum's Outwelling Hypothesis In 'Blue Carbon' Science, Isaac R. Santos, David J. Burdige, Tim C. Jennerjahn, Steven Bouillon, Alex Cabral, Oscar Serrano, Thomas Wernberg, Karen Filbee-Dexter, Julia A. Guimond, Joseph J. Tamborski Jan 2021

The Renaissance Of Odum's Outwelling Hypothesis In 'Blue Carbon' Science, Isaac R. Santos, David J. Burdige, Tim C. Jennerjahn, Steven Bouillon, Alex Cabral, Oscar Serrano, Thomas Wernberg, Karen Filbee-Dexter, Julia A. Guimond, Joseph J. Tamborski

OES Faculty Publications

The term ‘Blue Carbon’ was coined about a decade ago to highlight the important carbon sequestration capacity of coastal vegetated ecosystems. The term has paved the way for the development of programs and policies that preserve and restore these threatened coastal ecosystems for climate change mitigation. Blue carbon research has focused on quantifying carbon stocks and burial rates in sediments or accumulating as biomass. This focus on habitat-bound carbon led us to losing sight of the mobile blue carbon fraction. Oceans, the largest active reservoir of carbon, have become somewhat of a blind spot. Multiple recent investigations have revealed high …

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Effects Of Tidal Flooding On Estuarine Biogeochemistry: Quantifying Flood-Driven Nitrogen Inputs In An Urban, Lower Chesapeake Bay Sub-Tributary, Alfonso Macías-Tapia, Margaret R. Mulholland, Corday R. Selden, J. Derek Loftis, Peter W. Bernhardt Jan 2021

Effects Of Tidal Flooding On Estuarine Biogeochemistry: Quantifying Flood-Driven Nitrogen Inputs In An Urban, Lower Chesapeake Bay Sub-Tributary, Alfonso Macías-Tapia, Margaret R. Mulholland, Corday R. Selden, J. Derek Loftis, Peter W. Bernhardt

OES Faculty Publications

Sea level rise has increased the frequency of tidal flooding even without accompanying precipitation in many coastal areas worldwide. As the tide rises, inundates the landscape, and then recedes, it can transport organic and inorganic matter between terrestrial systems and adjacent aquatic environments. However, the chemical and biological effects of tidal flooding on urban estuarine systems remain poorly constrained. Here, we provide the first extensive quantification of floodwater nutrient concentrations during a tidal flooding event and estimate the nitrogen (N) loading to the Lafayette River, an urban tidal sub-tributary of the lower Chesapeake Bay (USA). To enable the scale of …

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An Assessment Of Regional Icesat-2 Sea-Level Trends, Brett Buzzanga, Eduard Heijkoop, Benjamin D. Hamlington, R. Steven Nerem, Alex Gardner Jan 2021

An Assessment Of Regional Icesat-2 Sea-Level Trends, Brett Buzzanga, Eduard Heijkoop, Benjamin D. Hamlington, R. Steven Nerem, Alex Gardner

OES Faculty Publications

Sea-level rise is an important indicator of ongoing climate change and well observed by satellite altimetry. However, observations from conventional altimetry degrade at the coast where regional sea-level changes can deviate from the open-ocean and impact local communities. With the 2018 launch of the laser altimeter onboard ICESat-2, new high-resolution observations of ice, land, and ocean elevations are available. Here we assess the potential benefits of sea level measured by ICESat-2 by comparing to data from Jason-3 and tide gauges. We find good agreement in the linear rates computed from the independent observations, with an absolute average residual of 3.60 …

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Diatom Hotspots Driven By Western Boundary Current Instability, Hilde Oliver, Weifeng G. Zhang, Walker O. Smith Jr., Philip Alatalo, P. Dreux Chappell, Andrew J. Hirzel, Corday R. Selden, Heidi M. Sosik, Rachel H.R. Stanley, Yifan Zhu, Dennis J. Mcgillicuddy Jr. Jan 2021

Diatom Hotspots Driven By Western Boundary Current Instability, Hilde Oliver, Weifeng G. Zhang, Walker O. Smith Jr., Philip Alatalo, P. Dreux Chappell, Andrew J. Hirzel, Corday R. Selden, Heidi M. Sosik, Rachel H.R. Stanley, Yifan Zhu, Dennis J. Mcgillicuddy Jr.

OES Faculty Publications

Abstract Climatic changes have decreased the stability of the Gulf Stream (GS), increasing the frequency at which its meanders interact with the Mid-Atlantic Bight (MAB) continental shelf and slope region. These intrusions are thought to suppress biological productivity by transporting low-nutrient water to the otherwise productive shelf edge region. Here we present evidence of widespread, anomalously intense subsurface diatom hotspots in the MAB slope sea that likely resulted from a GS intrusion in July 2019. The hotspots (at ∼50 m) were associated with water mass properties characteristic of GS water (∼100 m); it is probable that the hotspots resulted from …

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Plate Boundary And Triple Junction Control Of Shatsky Rise Formation And Implications For Other Ocean Plateaus, Jennifer E. Georgen, Katrina Shotorban Jan 2021

Plate Boundary And Triple Junction Control Of Shatsky Rise Formation And Implications For Other Ocean Plateaus, Jennifer E. Georgen, Katrina Shotorban

OES Faculty Publications

In the study of marine large igneous provinces, investigations often focus on the importance of mantle plumes in generating excess magmatism. Few studies, however, have addressed the role of plate boundary processes in promoting widespread and extensive mantle melting. This study investigates how spreading center geometry may have facilitated the emplacement of Shatsky Rise, an oceanic plateau in the western Pacific Ocean. The largest structure within Shatsky Rise, Tamu Massif, was created ∼140–150 Ma at the Pacific-Izanagi-Farallon (PIF) ridge-ridge-ridge triple junction. Moreover, the PIF triple junction was one of three triple junctions operating in close proximity at the time, as …

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Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor Jan 2021

Lipid Markers And Compound-Specific Carbon Isotopes As Diet And Biosynthesis Reflectors In The Northern Neptune Whelk Neptunea Heros, H. Rodger Harvey, Rachel Mcmahon, Karen A. Taylor

OES Faculty Publications

A suite of lipid biomarkers plus compound-specific carbon isotopes of major sterols were determined in muscle tissues across increasing sizes of northern Neptune whelks Neptunea heros, developing eggs and potential diets to link trophic patterns, metabolism and carbon sources on the Chukchi Sea shelf. Analysis of primary prey included the northern clam Astarte borealis, water column particulate organic matter (POM) and surface sediments near the collection sites. Sterols specific to major algal groups along with algal-derived polyunsaturated fatty acids (C20:5n-3, C20:4n-3, C22:6n-3) in whelk muscle tissue reflected the importance of algal primary production to benthic consumers and its …

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Detrital Neodymium And (Radio)Carbon As Complementary Sedimentary Bedfellows? The Western Arctic Ocean As A Testbed, Melissa S. Schwab, Jörg D. Rickli, Robie W. Macdonald, H. Rodger Harvey, Negar Haghipour, Timothy I. Eglinton Jan 2021

Detrital Neodymium And (Radio)Carbon As Complementary Sedimentary Bedfellows? The Western Arctic Ocean As A Testbed, Melissa S. Schwab, Jörg D. Rickli, Robie W. Macdonald, H. Rodger Harvey, Negar Haghipour, Timothy I. Eglinton

OES Faculty Publications

Interactions between organic and detrital mineral phases strongly influence both the dispersal and accumulation of terrestrial organic carbon (OC) in continental margin sediments. Yet the complex interplay among biological, chemical, and physical processes limits our understanding of how organo-mineral interactions evolve during sediment transfer and burial. In particular, diverse OC sources and complex hydrodynamic processes hinder the assessment of how the partnership of organic matter and its mineral host evolves during supply and dispersal over continental margins. In this study, we integrate new and compiled sedimentological (grain size, surface area), organic (%OC, OC-δ13C, OC-F14C), and inorganic …

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Seasonal Dispersal Of Fjord Meltwaters As An Important Source Of Iron And Manganese To Coastal Antarctic Phytoplankton, Kiefer O. Forsch, Lisa Hahn-Woernle, Robert M. Sherrell, Vincent J. Roccanova, Kaixuan Bu, David Burdige, Maria Vernet, Katherine A. Barbeau Jan 2021

Seasonal Dispersal Of Fjord Meltwaters As An Important Source Of Iron And Manganese To Coastal Antarctic Phytoplankton, Kiefer O. Forsch, Lisa Hahn-Woernle, Robert M. Sherrell, Vincent J. Roccanova, Kaixuan Bu, David Burdige, Maria Vernet, Katherine A. Barbeau

OES Faculty Publications

Glacial meltwater from the western Antarctic Ice Sheet is hypothesized to be an important source of cryospheric iron, fertilizing the Southern Ocean, yet its trace-metal composition and factors that control its dispersal remain poorly constrained. Here we characterize meltwater iron sources in a heavily glaciated western Antarctic Peninsula (WAP) fjord. Using dissolved and particulate ratios of manganese to iron in meltwaters, porewaters, and seawater, we show that surface glacial melt and subglacial plumes contribute to the seasonal cycle of iron and manganese within a fjord still relatively unaffected by climate-change-induced glacial retreat. Organic ligands derived from the phytoplankton bloom and …

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Fmri Feature Extraction Model For Adhd Classification Using Convolutional Neural Network, Senuri De Silva, Sanuwani Udara Dayarathna, Gangani Ariyarathne, Dulani Meedeniya, Sampath Jayarathna Jan 2021

Fmri Feature Extraction Model For Adhd Classification Using Convolutional Neural Network, Senuri De Silva, Sanuwani Udara Dayarathna, Gangani Ariyarathne, Dulani Meedeniya, Sampath Jayarathna

Computer Science Faculty Publications

Biomedical intelligence provides a predictive mechanism for the automatic diagnosis of diseases and disorders. With the advancements of computational biology, neuroimaging techniques have been used extensively in clinical data analysis. Attention deficit hyperactivity disorder (ADHD) is a psychiatric disorder, with the symptomology of inattention, impulsivity, and hyperactivity, in which early diagnosis is crucial to prevent unwelcome outcomes. This study addresses ADHD identification using functional magnetic resonance imaging (fMRI) data for the resting state brain by evaluating multiple feature extraction methods. The features of seed-based correlation (SBC), fractional amplitude of low-frequency fluctuation (fALFF), and regional homogeneity (ReHo) are comparatively applied to …

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Smart Parking Systems: Reviewing The Literature, Architecture And Ways Forward, Can Biyik, Zaheer Allam, Gabriele Pieri, Davide Moroni, Muftah O' Fraifer, Eoin O' Connell, Stephan Olariu, Muhammad Khalid Jan 2021

Smart Parking Systems: Reviewing The Literature, Architecture And Ways Forward, Can Biyik, Zaheer Allam, Gabriele Pieri, Davide Moroni, Muftah O' Fraifer, Eoin O' Connell, Stephan Olariu, Muhammad Khalid

Computer Science Faculty Publications

The Internet of Things (IoT) has come of age, and complex solutions can now be implemented seamlessly within urban governance and management frameworks and processes. For cities, growing rates of car ownership are rendering parking availability a challenge and lowering the quality of life through increased carbon emissions. The development of smart parking solutions is thus necessary to reduce the time spent looking for parking and to reduce greenhouse gas emissions. The principal role of this research paper is to analyze smart parking solutions from a technical perspective, underlining the systems and sensors that are available, as documented in the …

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