Physical Sciences and Mathematics Commons^™

Marine Infectious Disease Dynamics And Outbreak Thresholds: Contact Transmission, Pandemic Infection, And The Potential Role Of Filter Feeders, Gorka Bidegain, Eric N. Powell, John M. Klinck, Tal Ben-Horin, Eileen E. Hofmann

CCPO Publications

Disease-causing organisms can have significant impacts on marine species and communities. However, the dynamics that underlie the emergence of disease outbreaks in marine ecosystems still lack the equivalent level of description, conceptual understanding, and modeling context routinely present in the terrestrial systems. Here, we propose a theoretical basis for modeling the transmission of marine infectious diseases (MIDs) developed from simple models of the spread of infectious disease. The models represent the dynamics of a variety of host-pathogen systems including those unique to marine systems where transmission of disease is by contact with waterborne pathogens both directly and through filter-feeding processes. …

Understanding The Structure And Functioning Of Polar Pelagic Ecosystems To Predict The Impacts Of Change, E. E. Murphy, R. D. Cavanagh, K. F. Drinkwater, S. M. Grant, J. J. Heymans, E. E. Hofmann, G. L. Hunt Jr., N. M. Johnston

CCPO Publications

The determinants of the structure, functioning and resilience of pelagic ecosystems across most of the polar regions are not well known. Improved understanding is essential for assessing the value of biodiversity and predicting the effects of change (including in biodiversity) on these ecosystems and the services they maintain. Here we focus on the trophic interactions that underpin ecosystem structure, developing comparative analyses of how polar pelagic food webs vary in relation to the environment. We highlight that there is not a singular, generic Arctic or Antarctic pelagic food web, and, although there are characteristic pathways of energy flow dominated by …

Iterative Monte Carlo Analysis Of Spin-Dependent Parton Distributions, Nobuo Sato, W. Melnitchouk, S. E. Kuhn, J. J. Ethier, A. Accardi, Jefferson Lab Angular Momentum Collaboration

Physics Faculty Publications

We present a comprehensive new global QCD analysis of polarized inclusive deep-inelastic scattering, including the latest high-precision data on longitudinal and transverse polarization asymmetries from Jefferson Lab and elsewhere. The analysis is performed using a new iterative Monte Carlo fitting technique which generates stable fits to polarized parton distribution functions (PDFs) with statistically rigorous uncertainties. Inclusion of the Jefferson Lab data leads to a reduction in the PDF errors for the valence and sea quarks, as well as in the gluon polarization uncertainty at x ≳ 0.1 . The study also provides the first determination of the flavor-separated twist-3 PDFs …

High-Fidelity Simulations Of Long-Term Beam-Beam Dynamics On Gpus, B. Terzić, K. Arumugam, M. Aturban, C. Cotnoir, A. Godunov, D. Ranjan, M. Stefani, M. Zubair, F. Lin, V. Morozov, Y. Roblin, H. Zhang

Physics Faculty Publications

Future machines such as the Electron Ion Collider (MEIC), linac-ring machines (eRHIC) or LHeC are particularly sensitive to beam-beam effects. This is the limiting factor for long-term stability and high luminosity reach. The complexity of the non-linear dynamics makes it challenging to perform such simulations typically requiring millions of turns. Until recently, most of the methods have involved using linear approximations and/or tracking for a limited number of turns. We have developed a framework which exploits a massively parallel Graphical Processing Units (GPU) architecture to allow for tracking millions of turns in a sympletic way up to an arbitrary order. …

Rapidity Factorization And Evolution Of Gluon Tmds, Ian Balitsky

Physics Faculty Publications

I discuss how the rapidity evolution of gluon transverse momentum dependent distribution changes from nonlinear evolution at small x « 1 to linear evolution at moderate x ∼ 1.

Hadron Resonaces From Qcd, Jozef J. Dudek

Physics Faculty Publications

I describe how hadron-hadron scattering amplitudes are related to the eigenstates of QCD in a finite cubic volume. The discrete spectrum of such eigenstates can be determined from correlation functions computed using lattice QCD, and the corresponding scattering amplitudes extracted. I review results from the Hadron Spectrum Collaboration who have used these finite volume methods to study ππ elastic scattering, including the ρ resonance, as well as coupled-channel πK, ηK scattering. The very recent extension to the case where an external current acts is also presented, considering the reaction πγ^* → ππ, from which the unstable ρ …

Connecting Physical Resonant Amplitudes And Lattice Qcd, Daniel R. Bolton, Raúl A. Briceño, David J. Wilson

Physics Faculty Publications

We present a determination of the isovector, P-wave π π scattering phase shift obtained by extrapolating recent lattice QCD results from the Hadron Spectrum Collaboration using m_{π =} 236 MeV. The finite volume spectra are described using extensions of Ltischer's method to determine the infinite volume Unitarized Chiral Perturbation Theory scattering amplitude. We exploit the pion mass dependence of this effective theory to obtain the scattering amplitude at m_π = 140 MeV. The scattering phase shift is found to agree with experiment up to center of mass energies of 1.2 GeV. The analytic continuation of the scattering amplitude …

First Measurement Of The Helicity Asymmetry E In Ƞ Photoproduction On The Proton, I. Senderovich, B.T. Morrison, M. Dugger, B.G. Ritchie, E. Pasyuk, R. Tucker, J. Brock, C. Carlin, C.D. Keith, D. G. Meekins, Y. Prok

Physics Faculty Publications

Results are presented for the first measurement of the double-polarization helicity asymmetry E for the ƞ photoproduction reaction ɣp -> ηp. Data were obtained using the FROzen Spin Target (FROST) with the CLAS spectrometer in Hall B at Jefferson Lab, covering a range of center-of-mass energy W from threshold to 2.15 GeV and a large range in center-of-mass polar angle. As an initial application of these data, the results have been incorporated into the Jülich-Bonn model to examine the case for the existence of a narrow N* resonance between 1.66 and 1.70 GeV. The addition of these data to the …

Building Resiliency In Response To Sea Level Rise And Recurrent Flooding: Comprehensive Planning In Hampton Roads, Joshua G. Behr, Rafael Diaz, Molly Mitchell

VMASC Publications

[Introduction]

Over the past few decades, the Hampton Roads region, with its extensive coastline, has been experiencing more frequent flooding from surges and precipitation caused by tropical storms, nor’easters and heavy thunderstorms (Figure 1). Recurrent flooding is “flooding that occurs repeatedly in the same area over time due to precipitation events, high tides or storm surge.”¹ The recurrence of tidal/surge flooding in Hampton Roads has increased from 1.7 days of “nuisance” flooding per year in 1960 to 7.3 days per year in 2014.² Although there is no definitive region-wide data to document the increases in precipitation-induced flooding, there …

Development Of The Electron Cooling Simulation Program For Jleic, H. Zhang, J. Chen, R. Li, Y. Zhang, H. Huang, L. Luo

Mathematics & Statistics Faculty Publications

In the JLab Electron Ion Collider (JLEIC) project the traditional electron cooling technique is used to reduce the ion beam emittance at the booster ring, and to compensate the intrabeam scattering effect and maintain the ion beam emittance during collision at the collider ring. A new electron cooling process simulation program has been developed to fulfill the requirements of the JLEIC electron cooler design. The new program allows the users to calculate the electron cooling rate and simulate the cooling process with either DC or bunched electron beam to cool either coasting or bunched ion beam. It has been benchmarked …

A Demonstration Project Of The Action-Oriented Stakeholder Engagement For A Resilient Tomorrow (Asert) Framework: Effectiveness, Juita-Elena (Wie) Yusuf, Michelle Covi, Carol Considine, Burton St. John Iii, Gail Nicula, Pragati Rawat, Kaitlin Giles

Presentations, Lectures, Posters, Reports

Poster presentation by the Research Team of the ODU Resilience Collaborative used from March-May, 2016

Geospatial Approaches To Support Pelagic Conservation Planning And Adaptive Management, L. M. Wedding, Sara M. Maxwell, D. Hyrenbach, D. C. Dunn, J. J. Roberts, D. Briscoe, E. Hines, P. N. Halpin

Biological Sciences Faculty Publications

Place-based management in the open ocean faces unique challenges in delineating boundaries around temporally and spatially dynamic systems that span broad geographic scales and multiple management jurisdictions, especially in the 'high seas'. Geospatial technologies are critical for the successful design of pelagic conservation areas, because they provide information on the spatially and temporally dynamic oceanographic features responsible for driving species distribution and abundance in the open ocean, the movements of protected species, and the spatial patterns of distribution of potential threats. Nevertheless, there are major challenges to implementing these geospatial approaches in the open ocean. This Theme Section seeks to …

Selective Mutation Accumulation: A Computational Model Of The Paternal Age Effect, Eoin C. Whelan, Alexander C. Nwala, Christopher Osgood, Stephan Olariu

Biological Sciences Faculty Publications

Motivation: As the mean age of parenthood grows, the effect of parental age on genetic disease and child health becomes ever more important. A number of autosomal dominant disorders show a dramatic paternal age effect due to selfish mutations: substitutions that grant spermatogonial stem cells (SSCs) a selective advantage in the testes of the father, but have a deleterious effect in offspring. In this paper we present a computational technique to model the SSC niche in order to examine the phenomenon and draw conclusions across different genes and disorders.

Results: We used a Markov chain to model the probabilities of …

Mechanism Of Seasonal Arctic Sea Ice Evolution And Arctic Amplification, Kwang-Yul Kim, Benjamin D. Hamlington, Hanna Na, Jinju Kim

CCPO Publications

Sea ice loss is proposed as a primary reason for the Arctic amplification, although the physical mechanism of the Arctic amplification and its connection with sea ice melting is still in debate. In the present study, monthly ERA-Interim reanalysis data are analyzed via cyclostationary empirical orthogonal function analysis to understand the seasonal mechanism of sea ice loss in the Arctic Ocean and the Arctic amplification. While sea ice loss is widespread over much of the perimeter of the Arctic Ocean in summer, sea ice remains thin in winter only in the Barents-Kara seas. Excessive turbulent heat flux through the sea …

An Ongoing Shift In Pacific Ocean Sea Level, B. D. Hamlington, S. H. Cheon, P. R. Thompson, M. A. Merrifield, R. S. Nerem, R. R. Leben, K.-Y. Kim

CCPO Publications

Based on the satellite altimeter data, sea level off the west coast of the United States has increased over the past 5 years, while sea level in the western tropical Pacific has declined. Understanding whether this is a short‐term shift or the beginning of a longer‐term change in sea level has important implications for coastal planning efforts in the coming decades. Here, we identify and quantify the recent shift in Pacific Ocean sea level, and also seek to describe the variability in a manner consistent with recent descriptions of El Nino‐Southern Oscillation (ENSO) and particularly the Pacific Decadal Oscillation (PDO). …

Rcd+: Fast Loop Modeling Server, José R. López-Blanco, Alejandro J. Canosa-Valis, Yaohang Li, Pablo Chacón

Computer Science Faculty Publications

Modeling loops is a critical and challenging step in protein modeling and prediction. We have developed a quick online service (http://rcd.chaconlab.org) for ab initio loop modeling combining a coarse-grained conformational search with a full-atom refinement. Our original Random Coordinate Descent (RCD) loop closure algorithm has been greatly improved to enrich the sampling distribution towards near-native conformations. These improvements include a new workflow optimization, MPI-parallelization and fast backbone angle sampling based on neighbor-dependent Ramachandran probability distributions. The server starts by efficiently searching the vast conformational space from only the loop sequence information and the environment atomic coordinates. The generated closed loop …

Virginia Wins $120.5 Million Resilience Grant Spearheaded By Old Dominion University, Brendan O'Hallarn

News Items

No abstract provided.

Life In Hampton Roads Survey Press Release #5: Sea Level Rise And Flooding, Social Science Research Center, Old Dominion University

Life in Hampton Roads Survey Report

This report examines regional measures of environmental risk perceptions from the 2016 Life In Hampton Roads survey (LIHR 2016) conducted by the Old Dominion University Social Science Research Center. Data from prior years is also provided when available to show comparisons in responses over time. Responses were weighted by city population, race, age, gender, and phone usage (cell versus land-line) to be representative of the Hampton Roads region.

Are We Missing Important Areas In Pelagic Marine Conservation? Redefining Conservation Hotspots In The Ocean, Dana K. Briscoe, Sara M. Maxwell, Raphael Kudela, Larry B. Crowder

Biological Sciences Faculty Publications

The protection of biodiversity is one of the most important goals in terrestrial and marine conservation. Marine conservation approaches have traditionally followed the example of terrestrial initiatives. However, patterns, processes, habitats, and threats differ greatly between the 2 systems - and even within the marine environment. As a result, there is still a lack of congruence as to how to best identify and prioritize conservation approaches moving from the static terrestrial and nearshore realm into a more fluid, 3-dimensional pelagic realm. To address this problem, we investigate how the conservation science literature has been used to inform and guide management …

Climate Change Mitigation, Technological Innovation And Adaptation: A New Perspective On Climate Policy, Michael J. Allen

Political Science & Geography Faculty Publications

The book Climate Change Mitigation, Technological Innovation and Adaptation outlines the complexities associated with addressing climate change including economic structure, technological innovation, and geopolitical willpower. By focusing on global economics, the text considers barriers to climate policy and future energy transformation away from carbon to more renewable sources. Additionally, the authors highlight the role of innovation in mitigation and adaptation.

A Demonstration Project Of The Action-Oriented Stakeholder Engagement For A Resilient Tomorrow (Asert) Framework: Efficacy, Juita-Elena (Wie) Yusuf, Michelle Covi, Carol Considine, Burton St. John Iii, Gail Nicula, Pragati Rawat, Kaitlin Giles

Presentations, Lectures, Posters, Reports

Poster presentation by the Research Team of the ODU Resilience Collaborative used March-May 2016. This poster focuses on efficacy of the ASERT Framework and includes charts.

The Sea Is Rising… But Not Onto The Policy Agenda: A Multiple Streams Approach To Understanding Sea Level Rise Policies, Juita-Elena (Wie) Yusuf, Katharine Neill, Burton St. John Iii, Ivan K. Ash, Kaitrin Mahar

School of Public Service Faculty Publications

There has been little policy effort to address sea level rise in coastal states in the US. It is important to examine, at the state level, how the multitude of different (and changing) actors with different preferences and perspectives contribute to such inertia. This study examines state-level legislative inaction with regards to sea level rise. Using Kingdon's multiple streams framework, we draw a picture of the policy landscape in Virginia as one where the problem of sea level rise is perceived as a low priority, with little consensus on achievable policy solutions, and is politically controversial. We find that policy …

Action-Oriented Stakeholder Engagement For A Resilient Tomorrow (Asert) Framework, Michelle Covi, Juita-Elena (Wie) Yusuf, Carol Considine, Burton St. John Iii, Gail Nicula

Presentations, Lectures, Posters, Reports

Poster presentation from the Research Team of the ODU Resilience Collaborative.

N3lo Nn Interaction Adjusted To Light Nuclei In Ab Exitu Approach, A. M. Shirokov, I. J. Shin, Y. Kim, M. Sosonkina, P. Maris, J. P. Vary

Computational Modeling & Simulation Engineering Faculty Publications

We use phase-equivalent transformations to adjust off-shell properties of similarity renormalization group evolved chiral effective field theory NN interaction (Idaho N3LO) to fit selected binding energies and spectra of light nuclei in an ab exitu approach. We then test the transformed interaction on a set of additional observables in light nuclei to verify that it provides reasonable descriptions of these observables with an apparent reduced need for three- and many-nucleon interactions.

Watertight And 2-Manifold Surface Meshes Using Dual Contouring With Tetrahedral Decomposition Of Grid Cubes, Tanweer Rashid, Sharmin Sultana, Michel A. Audette

Computational Modeling & Simulation Engineering Faculty Publications

The Dual Contouring algorithm (DC) is a grid-based process used to generate surface meshes from volumetric data. The advantage of DC is that it can reproduce sharp features by inserting vertices anywhere inside the grid cube, as opposed to the Marching Cubes (MC) algorithm that can insert vertices only on the grid edges. However, DC is unable to guarantee 2-manifold and watertight meshes due to the fact that it produces only one vertex for each grid cube. We present a modified Dual Contouring algorithm that is capable of overcoming this limitation. Our method decomposes an ambiguous grid cube into a …

Estimated Grass Grazing Removal Rate In A Semiarid Eurasian Steppe Watershed As Influenced By Climate, Xixi Wang, Shohreh Pedram, Tingxi Liu, Ruizhong Gao, Fengling Li, Yanyun Luo

Civil & Environmental Engineering Faculty Publications

Grazing removal rate of grasses needs to be determined for various climate conditions to address eco-environmental concerns (e.g., desertification) related to steppe grassland degradation. The conventional approach, which requires survey data on animal species and heads as well as grass consumption per individual animal, is too costly and time-consuming to be applied at a watershed scale. The objective of this study was to present a new approach that can be used to estimate grazing removal rate with no requirement of animal-related data. The application of this new approach was demonstrated in a Eurasian semiarid typical-steppe watershed for an analysis period …

A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Jia-Pu Jang, Hsu-Kuang Chang, Fred C. Dobbs

OES Faculty Publications

The turbid, low-light waters characteristic of aquaculture ponds have made it difficult or impossible for previous video cameras to provide clear imagery of the ponds' benthic habitat. We developed a highly sensitive, underwater video system (UVS) for this particular application and tested it in shrimp ponds having turbidities typical of those in southern Taiwan. The system's high-quality video stream and images, together with its camera capacity (up to nine cameras), permit in situ observations of shrimp feeding behavior, shrimp size and internal anatomy, and organic matter residues on pond sediments. The UVS can operate continuously and be focused remotely, a …

Number Knowledge And Error Types Of Elementary Portuguese Students: Implications For Instruction, Silvana Watson, Sharon Judge, João Lopes, Célia Oliveira, Ana Catarina Jesus

Communication Disorders & Special Education Faculty Publications

In the present study, we examined number knowledge skills of 697 Portuguese elementary students from first to fourth grade. Students completed three number knowledge tasks: 1) translating numbers into words, 2) symbolic magnitude (i.e., number comparison), and 3) decomposing numbers. We evaluated students’ answers by means of error analysis using a three-category coding system adopted from specific error types were computed by grade level. Results showed that there were significant differences among grades and that the prerequisite linguistic error type (i.e., pre linguistic rules or principles of the cardinal number system), particularly in the magnitude tasks, significantly contributed to students’ …

Powerlessness Repurposed: The Feminist Ethos Of Judy Bonds, Mary Beth Pennington

English Faculty Publications

No abstract provided.

Quantitative Assessment Of Secondary Flows Of Single-Phase Fluid Through Pipe Bends, Z. Kaldy, O. Ayala

Engineering Technology Faculty Publications

Single-phase fluid flow was simulated passing through various three dimensional pipe elbows. The simulations varied by Reynolds number, curvature ratios, and sweep angles and were all conducted using the k-e model available in COMSOL Multiphysics 5.1. The intent of this research was to qualitatively assess the flow characteristics under several different conditions. Many similarities were seen especially when comparing curvature ratios, the vorticity location for the turbulent cases show near identical behavior at the elbow midsection. One of the variables quantified in this paper is the maximum secondary velocity module which shows increasing values until the midsection of the elbow.