Physical Sciences and Mathematics Commons^™

Nanomechanical And Morphological Characterization Of Tungsten Trioxide (Wo3) Thin Films Grown By Atomic Layer Deposition, M. A. Mamun, K. Zhang, H. Baumgart, A. A. Elmustafa

Mechanical & Aerospace Engineering Faculty Publications

This study investigates the nanomechanical properties and surface morphology of tungsten oxide WO₃thin films deposited on p-type Si(100) substrates using atomic layer deposition (ALD) technology with 2000 ALD deposition cycles at a growth temperature of 300°C and annealed at different temperatures. The samples were further furnace annealed at 500, 600 and 700°C for 60 min. The influence of the deposition process on the structure and properties of the WO₃ films is discussed, presented and correlated to the characteristic features of the ALD technique. The results depict significant difference in the hardness and modulus measurements between the as …

Romania's Participation To The European Assessment Project Titled Hyunder, Multi-Criterial Analyses Of Salt Cavern Locations, Ioan Iordache, Dorin Schitea, Adriana Marinoiu, Mihaela Buga, Mihai Balan, Ioan Stefanescu, Adrian Gheorghe, Mihaela Iordache, Viviana Cigolotti (Ed.), Chiara Barchiesi (Ed.), Michela Chianella (Ed.)

Engineering Management & Systems Engineering Faculty Publications

The scope of the work is to assess the potential, the actors and relevant business cases for large scale storage of renewable electricity by hydrogen underground storage in Romania. This presentation intends to provide a picture of the multi-criterial analyses of salt cavern locations in Romania.

The energy sector is facing with the necessity to store large energy quantities for short to long term in order to adapt to the increasingly intermittent renewable energy. The results of this presentation have originated from an ongoing European assessment project by the name of HyUnder (FCH JU, grant 303417) regarding utilization of salt …

Learning By Doing - Energy Systems Management, Nima Shahriari, Adrian V. Gheorghe

Engineering Management & Systems Engineering Faculty Publications

Climate change concerns have confronted energy policy makers by unprecedented challenges in the 21st century. Revolution of renewable energy technologies, as well as more efficient energy systems, has been promising in the context of global warming. However, these technologies are not maturing and chaning. Consequently planning for development of these resources requires dealing with various multidisciplinary research questions such as financial feasibility of renewable energy projects. Nevertheless, there is considerable lack of education programs offering multidisciplinary approach for addressing the current energy challenges. Based on the 21st evolving energy landscape, an interdisciplinary graduate certificate course work was designed at Old …

Engineering Analytics: Research Into The Governance Structure Needed To Integrate The Dominant Design Methodologies, Teddy Steven Cotter

Engineering Management & Systems Engineering Faculty Publications

In the ASEM-IAC 2014, Cotter (2014) explored the current state of engineering design, identified the dominate approaches to engineering design, discussed potential contributions from the new field of data analytics to engineering design, and proposed an Engineering Analytics framework that integrates the dominate engineering design approaches and data analytics within a human-intelligence/machine-intelligence (HI-MI) design architecture. This paper reports research applying ontological engineering to integrate the dominate engineering design methodologies into a systemic engineering design decision governance architecture.

Statistical Engineering: A Causal-Stochastic Modeling Research Update, Teddy Steven Cotter

Engineering Management & Systems Engineering Faculty Publications

In the ASEM-IAC 2012, Cotter (2012) summarized prior works that led to the proposal for statistical engineering, identified the gaps in knowledge that statistical engineering needs to address, explored additional gaps in knowledge not addressed in the prior works, set forth a working definition of and body of knowledge for statistical engineering, and set forth proposals of potential systems contributions the Engineering Management profession could make toward the development of statistical engineering. In 2014, the ASQ Statistics Division, DOT&E, NASA, and IDA co-sponsored a Statistical Engineering Agreement to jointly research development of the discipline of statistical engineering. The statistics community …

Key Factors Driving Personnel Downsizing In Multinational Military Organizations, Ilksen Gorkem, Resit Unal, Pilar Pazos

Engineering Management & Systems Engineering Faculty Publications

Although downsizing has long been a topic of research in traditional organizations, there are very few studies of this phenomenon in military contexts. As a result, we have little understanding of the key factors that drive personnel downsizing in military setting. This study contributes to our understanding of key factors that drive personnel downsizing in military organizations and whether those factors may differ across NATO nations’ cultural clusters. The theoretical framework for this study was built from studies in non-military contexts and adapted to fit the military environment.

This research relies on historical data from one of the largest multinational …

Research Agenda Into Human-Intelligence/Machine-Intelligence Governance, Teddy Steven Cotter

Engineering Management & Systems Engineering Faculty Publications

Since the birth of modern artificial intelligence (AI) at the 1956 Dartmouth Conference, the AI community has pursued modeling and coding of human intelligence into AI reasoning processes (HI Þ MI). The Dartmouth Conference's fundamental assertion was that every aspect of human learning and intelligence could be so precisely described that it could be simulated in AI. With the exception of knowledge specific areas (such as IBM's Big Blue and a few others), sixty years later the AI community is not close to coding global human intelligence into AI. In parallel, the knowledge management (KM) community has pursued understanding of …

Profiling Web Archives For Efficient Memento Query Routing, Sawood Alam, Michael L. Nelson, Herbert Van De Sompel, Lyudmila L. Balakireva, Harihar Shankar, David S. H. Rosenthal

Computer Science Faculty Publications

No abstract provided.

A Dynamic Programming Algorithm For Finding The Optimal Placement Of A Secondary Structure Topology In Cryo-Em Data, Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He

Computer Science Faculty Publications

The determination of secondary structure topology is a critical step in deriving the atomic structures from the protein density maps obtained from electron cryomicroscopy technique. This step often relies on matching the secondary structure traces detected from the protein density map to the secondary structure sequence segments predicted from the amino acid sequence. Due to inaccuracies in both sources of information, a pool of possible secondary structure positions needs to be sampled. One way to approach the problem is to first derive a small number of possible topologies using existing matching algorithms, and then find the optimal placement for each …

Divergent Responses Of Atlantic Coastal And Oceanic Synechococcus To Iron Limitation, Katherine R. M. Mackey, Anton F. Post, Matthew R. Mcilvin, Gregory A. Cutter, Seth G. John, Mak A. Saito

OES Faculty Publications

Marine Synechococcus are some of the most diverse and ubiquitous phytoplankton, and iron (Fe) is an essential micronutrient that limits productivity in many parts of the ocean. To investigate how coastal and oceanic Atlantic Synechococcus strains acclimate to Fe availability, we compared the growth, photophysiology, and quantitative proteomics of two Synechococcus strains from different Fe regimes. Synechococcus strain WH8102, from a region in the southern Sargasso Sea that receives substantial dust deposition, showed impaired growth and photophysiology as Fe declined, yet used few acclimation responses. Coastal WH8020, from the dynamic, seasonally variable New England shelf, displayed a multitiered, hierarchical cascade …

Predicting Carbon Isotope Discrimination In Eelgrass (Zostera Marina L.) From The Environmental Parameters- Light, Flow, And [Dic], Meredith L. Mcpherson, Richard C. Zimmerman, Victoria J. Hill

OES Faculty Publications

Isotopic discrimination against ¹³C during photosynthesis is determined by a combination of environmental conditions and physiological mechanisms that control delivery of CO₂ to RUBISCO. This study investigated the effects of light, flow, dissolved inorganic carbon (DIC) concentration, and its speciation, on photosynthetic carbon assimilation of Zostera marinaL. (eelgrass) using a combination of laboratory experiments and theoretical calculations leading to a mechanistic understanding of environmental conditions that influence leaf carbon uptake and determine leaf stable carbon isotope signatures δ¹³C. Photosynthesis was saturated with respect to flow at low velocity ~ 3 cm s^-1, but …

Predicting Effects Of Ocean Warming, Acidification, And Water Quality On Chesapeake Region Eelgrass, Richard C. Zimmerman, Victoria J. Hill, Charles L. Gallegos

OES Faculty Publications

Although environmental requirements of seagrasses have been studied for years, reliable metrics for predicting their response to current or future conditions remain elusive. Eelgrass (Zostera marina L.) populations of the Chesapeake region lie near the southern limit of their range in the Western North Atlantic, exposing them to increasing thermal stress as the climate warms. However, CO₂ stimulated photosynthesis may offset some of the negative effects of temperature stress. The combined effects of temperature, CO₂, and light availability controlled by water quality and epiphytes were explored using GrassLight, a bio-optical model that provided a predictive …

Understanding Ocean Acidification Impacts On Organismal To Ecological Scales, Andreas J. Andersson, David I. Kline, Peter J. Edmunds, Stephen D. Archer, Nina Bednarsek, Robert C. Carpenter, Meg Chadsey, Philip Goldstein, Andrea G. Grottoli, Thomas P. Hurst, Andrew L. King, Janet E. Kübler, Ilsa B. Kuffner, Katherine R.M. Mackey, Bruce A. Menge, Adina Paytan, Ulf Riebesell, Astrid Schnetzer, Mark E. Warner, Richard C. Zimmerman

OES Faculty Publications

Ocean acidification (OA) research seeks to understand how marine ecosystems and global elemental cycles will respond to changes in seawater carbonate chemistry in combination with other environmental perturbations such as warming, eutrophication, and deoxygenation. Here, we discuss the effectiveness and limitations of current research approaches used to address this goal. A diverse combination of approaches is essential to decipher the consequences of OA to marine organisms, communities, and ecosystems. Consequently, the benefits and limitations of each approach must be considered carefully. Major research challenges involve experimentally addressing the effects of OA in the context of large natural variability in seawater …

Tropical North Atlantic Subsurface Warming Events As A Fingerprint For Amoc Variability During Marine Isotope Stage 3, Andrew O. Parker, Matthew W. Schmidt, Ping Chang

OES Faculty Publications

The role of Atlantic Meridional Overturning Circulation (AMOC) as the driver of Dansgaard-Oeschger (DO) variability that characterized Marine Isotope Stage 3 (MIS 3) has long been hypothesized. Although there is ample proxy evidence suggesting that DO events were robust features of glacial climate, there is little data supporting a link with AMOC. Recently, modeling studies and subsurface temperature reconstructions have suggested that subsurface warming across the tropical North Atlantic can be used to fingerprint a weakened AMOC during the deglacial because a reduction in the strength of the western boundary current allows warm salinity maximum water of the subtropical gyre …

The Influence Of Sea Ice And Snow Cover And Nutrient Availability On The Formation Of Massive Under-Ice Phytoplankton Blooms In The Chukchi Sea, Jinlun Zhang, Carin Ashjian, Robert Campbell, Yvette H. Spitz, Michael Steele, Victoria Hill

OES Faculty Publications

A coupled biophysical model is used to examine the impact of changes in sea ice and snow cover and nutrient availability on the formation of massive under-ice phytoplankton blooms (MUPBs) in the Chukchi Sea of the Arctic Ocean over the period 1988–2013. The model is able to reproduce the basic features of the ICESCAPE (Impacts of Climate on EcoSystems and Chemistry of the Arctic Pacific Environment) observed MUPB during July 2011. The simulated MUPBs occur every year during 1988–2013, mainly in between mid-June and mid-July. While the simulated under-ice blooms of moderate magnitude are widespread in the Chukchi Sea, MUPBs …

Living On The Margin In The Anthropocene: Engagement Arenas For Sustainability Research And Action At The Ocean-Land Interface, B. C. Glavovic, K. Limburg, K-K. Liu, K-C. Emeis, H. Thomas, H. Kremer, B. Avril, J. Zhang, M. R. Mulholland, M. Glaser, D. P. Swaney

OES Faculty Publications

The advent of the Anthropocene underscores the need to develop and implement transformative governance strategies that safeguard the Earth's life-support systems, most critically at the ocean-land interface - the Margin. The seaward realm of the Margin is the new frontier for resource exploitation and colonization to meet the needs of coastal nations and humanity overall. Here, we spotlight the pivotal role of the Margin for planetary resilience and sustainability, highlight priority issues, and outline a research strategy which aims to: (a) better understand Margin social-ecological systems; (b) guide sustainable development of Margin resources; (c) design governance regimes to reverse unsustainable …

Heterotrophic And Autotrophic Contribution To Dinitrogen Fixation In The Gulf Of Aqaba, Eyal Rahav, Barak Herut, Margaret R. Mulholland, Natalia Belkin, Hila Elifantz, Ilana Berman-Frank

OES Faculty Publications

We evaluated the seasonal contribution of heterotrophic and autotrophic diazotrophy to the total dinitrogen (N₂) fixation in the photic zone of a pelagic station in the northern Gulf of Aqaba, Red Sea. N₂ fixation rates were highest during a Trichodesmium bloom in winter (0.7 nmol N l^-1 d^-1), decreased 7-fold 1 wk later throughout the upper 200 m (~0.1 nmol N l^-1) d^-1), and were significantly coupled with both primary and bacterial productivity. N₂ fixation rates were generally higher in the upper 200 m (~0.4 nmol N l^{-1 …}

The Geotraces Intermediate Data Product 2014, Edward Mawji, Reiner Schlitzer, Elena M. Dodas, Cyril Abadie, Wafa Abouchami, Robert F. Anderson, Gregory A. Cutter

OES Faculty Publications

The GEOTRACES Intermediate Data Product 2014 (IDP2014) is the first publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2013. It consists of two parts: (1) a compilation of digital data for more than 200 trace elements and isotopes (TEls) as well as classical hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing a strongly inter-linked on-line atlas including more than 300 section plots and 90 animated 3D scenes. The IDP2014 covers the Atlantic, Arctic, and Indian oceans, exhibiting highest data density in the Atlantic. The TEI data in …

Genetic Indicators Of Iron Limitation In Wild Populations Of Thalassiosira Oceanica From The Northeast Pacific Ocean, P. Dreux Chappell, Leann P. Whitney, Joselynn R. Wallace, Adam I. Darer, Samua Jean-Charles, Bethany D. Jenkins

OES Faculty Publications

Assessing the iron (Fe) nutritional status of natural diatom populations has proven challenging as physiological and molecular responses can differ in diatoms of the same genus. We evaluated expression of genes encoding flavodoxin (FLDA1) and an Fe-starvation induced protein (ISIP3) as indicators of Fe limitation in the marine diatom Thalassiosira oceanica. The specificity of the response to Fe limitation was tested in cultures grown under Fe-and macronutrient-deficient conditions, as well as throughout the diurnal light cycle. Both genes showed a robust and specific response to Fe limitation in laboratory cultures and were detected in small volume samples collected from …

Reminiscing About 15 Years Of Interoperability Efforts, Herbert Van De Sompel, Michael L. Nelson

Computer Science Faculty Publications

Over the past fifteen years, our perspective on tackling information interoperability problems for web-based scholarship has evolved significantly. In this opinion piece, we look back at three efforts that we have been involved in that aptly illustrate this evolution: OAI-PMH, OAI-ORE, and Memento. Understanding that no interoperability specification is neutral, we attempt to characterize the perspectives and technical toolkits that provided the basis for these endeavors. With that regard, we consider repository-centric and web-centric interoperability perspectives, and the use of a Linked Data or a REST/HATEAOS technology stack, respectively. We also lament the lack of interoperability across nodes that play …

Making Sense Of Video Analytics: Lessons Learned From Clickstream Interactions, Attitudes, And Learning Outcome In A Video-Assisted Course, Michail N. Giannakos, Konstantinos Chorianopoulos, Nikos Chrisochoides

Computer Science Faculty Publications

Online video lectures have been considered an instructional media for various pedagogic approaches, such as the flipped classroom and open online courses. In comparison to other instructional media, online video affords the opportunity for recording student clickstream patterns within a video lecture. Video analytics within lecture videos may provide insights into student learning performance and inform the improvement of video-assisted teaching tactics. Nevertheless, video analytics are not accessible to learning stakeholders, such as researchers and educators, mainly because online video platforms do not broadly share the interactions of the users with their systems. For this purpose, we have designed an …

Deep Convolutional Neural Networks For Annotating Gene Expression Patterns In The Mouse Brain, Tao Zeng, Rongjian Li, Ravi Mukkamala, Jieping Ye, Shuiwang Ji

Computer Science Faculty Publications

Background: Profiling gene expression in brain structures at various spatial and temporal scales is essential to understanding how genes regulate the development of brain structures. The Allen Developing Mouse Brain Atlas provides high-resolution 3-D in situ hybridization (ISH) gene expression patterns in multiple developing stages of the mouse brain. Currently, the ISH images are annotated with anatomical terms manually. In this paper, we propose a computational approach to annotate gene expression pattern images in the mouse brain at various structural levels over the course of development.

Results: We applied deep convolutional neural network that was trained on a large set …

Scalable 3d Hybrid Parallel Delaunay Image-To-Mesh Conversion Algorithm For Distributed Shared Memory Architectures, Daming Feng, Christos Tsolakis, Andrey N. Chernikov, Nikos P. Chrisochoides

Computer Science Faculty Publications

In this paper, we present a scalable three dimensional hybrid parallel Delaunay image-to-mesh conversion algorithm (PDR.PODM) for distributed shared memory architectures. PDR.PODM is able to explore parallelism early in the mesh generation process because of the aggressive speculative approach employed by the Parallel Optimistic Delaunay Mesh generation algorithm (PODM). In addition, it decreases the communication overhead and improves data locality by making use of a data partitioning scheme offered by the Parallel Delaunay Refinement algorithm (PDR). PDR.PODM utilizes an octree structure to decompose the initial mesh and to distribute the bad elements to different octree leaves (subregions). A set of …

Saccharomyces Boulardii And Bismuth Subsalicylate As Low-Cost Interventions To Reduce The Duration And Severity Of Cholera, Johnathan Sheele, Jessica Cartowski, Angela Dart, Arjun Poddar, Shikha Gupta, Ajay Gupta

Computer Science Faculty Publications

We conducted a randomised single-blinded clinical trial of 100 cholera patients in Port-au-Prince, Haiti to determine if the probiotic Saccharomyces cerevisiae var. boulardii and the anti-diarrhoeal drug bismuth subsalicylate (BS) were able to reduce the duration and severity of cholera. Subjects received either: S. boulardii 250 mg, S. boulardii 250 mg capsule plus BS 524 mg tablet, BS 524 mg, or two placebo capsules every 6 hours alongside standard treatment for cholera. The length of hospitalisation plus the number and volume of emesis, stool and urine were recorded every 6 hours until the study subject was discharged (n=83), left against …

Extreme-Scale Parallel Mesh Generation: Telescopic Approach, Nikos Chrisochoides, Andrey Chernikov, Daming Feng, Christos Tsolakis

Computer Science Faculty Publications

In this poster we focus and present our preliminary results pertinent to the integration of multiple parallel Delaunay mesh generation methods into a coherent hierarchical framework. The goal of this project is to study our telescopic approach and to develop Delaunay-based methods to explore concurrency at all hardware layers using abstractions at (a) medium-grain level for many cores within a single chip and (b) coarse-grain level, i.e., sub-domain level using proper error metric- and application-specific continuous decomposition methods.

Scaffolding To Improve Writing Skills In A Computer Science Literacy Course, Wu He, Harris Wu, Li Xu, Kurt Maly

Computer Science Faculty Publications

Writing has been recognized as an important skill in the technology field. This paper reports a study that uses a scaffolding approach to improve student writing skills in a computer science literacy course. While the quantitative results do not show a significant impact of scaffolding in individual paper assignment on the subsequent group wiki assignment, the student feedback in end-of-semester evaluations strongly indicated that scaffolding indeed helped improve their writing.

Impact Of Local Winter Cooling On The Melt Of Pine Island Glacier, Antarctica, P. St-Laurent, J. M. Klinck, M. S. Dinniman

CCPO Publications

The rapid thinning of the ice shelves in the Amundsen Sea is generally attributed to basal melt driven by warm water originating from the continental slope. We examine the hypothesis that processes taking place on the continental shelf contribute significantly to the interannual variability of the ocean heat content and ice shelf melt rates. A numerical model is used to simulate the circulation of ocean heat and the melt of the ice shelves over the period 2006–2013. The fine model grid (grid spacing 1.5 km) explicitly resolves the coastal polynyas and mesoscale processes. The ocean heat content of the eastern …

The Value Of Captains’ Behavioral Choices In The Success Of The Surfclam (Spisula Solidissima) Fishery On The U.S. Mid-Atlantic Coast: A Model Evaluation, Eric N. Powell, John M. Klinck, Daphne M. Munroe, Eileen E. Hofmann, Paula Moreno, Roger Mann

CCPO Publications

The response of the surfclam Spisula solidissima to warming of the Mid-Atlantic Bight is manifested by recession of the southern and inshore boundary of the clam’s range. This phenomenon has impacted the fishery through the closure of southern ports and the movement of processing capacity north, impacts that may require responsive actions on the part of fishery captains to mitigate a decline in fishery performance otherwise ineluctably accompanying this shift in range. The purpose of this study was to evaluate options in the behavioral repertoire of captains that might provide mitigation. A model capable of simulating a spatially and temporally …

Chesapeake Bay Nitrogen Fluxes Derived From A Land-Estuarine Ocean Biogeochemical Modeling System: Model Description, Evaluation, And Nitrogen Bonds, Yang Feng, Marjorie A.M. Friedrichs, John Wilkin, Hanqin Tian, Qichun Yang, Eileen E. Hofmann

CCPO Publications

The Chesapeake Bay plays an important role in transforming riverine nutrients before they are exported to the adjacent continental shelf. Although the mean nitrogen budget of the Chesapeake Bay has been previously estimated from observations, uncertainties associated with interannually varying hydrological conditions remain. In this study, a land-estuarine-ocean biogeochemical modeling system is developed to quantify Chesapeake riverine nitrogen inputs, within-estuary nitrogen transformation processes and the ultimate export of nitrogen to the coastal ocean. Model skill was evaluated using extensive in situ and satellite-derived data, and a simulation using environmental conditions for 2001-2005 was conducted to quantify the Chesapeake Bay nitrogen …

Effects Of Gravity On The Acceleration And Pair Statistics Of Inertial Particles In Homogeneous Isotropic Turbulence, H. Parishani, O. Ayala, B. Rosa, L.-P. Wang, W. W. Grabowski

Engineering Technology Faculty Publications

Within the context of heavy particles suspended in a turbulent airflow, we study the effects of gravity on acceleration statistics and radial relative velocity (RRV) of inertial particles. The turbulent flow is simulated by direct numerical simulation (DNS) on a 256³ grid and the dynamics of O(10⁶) inertial particles by the point-particle approach. For particles/droplets with radius from 10 to 60 µm, we found that the gravity plays an important role in particle acceleration statistics: (a) a peak value of particle acceleration variance appears in both the horizontal and vertical directions at a particle Stokes number …