Physical Sciences and Mathematics Commons^™

Phytoplankton Blooms: Their Occurence And Composition Within Virginia's Tidal Tributaries, Harold G. Marshall, Todd A. Egerton

Biological Sciences Faculty Publications

Sporadic algal bloom development within a 10 year monitoring program in Virginia tidal tributaries of Chesapeake Bay is reviewed. These blooms were common events, characteristically producing a color signature to the surface water, typically short lived, occurring mainly from spring into autumn throughout different salinity regions of these rivers, and were produced primarily by dinoflagellates. The abundance threshold levels that would identify bloom status from a non-bloom presence were species specific, varied with the taxon's cell size, and ranged from ca. 10 to 10(4) cells mL(-1). Among the most consistent sporadic bloom producers were the dinoflagellates Akashiwo sanguinea, Cochlodinium …

Biogenic Tracers Through The Holocene On The Alaskan Shelf, Carie A. Curry

OES Theses and Dissertations

Dramatic environmental changes in the Arctic Ocean have been observed for the last two decades including changing the amount of sea ice thickness and extent, and increased river discharge. In order to put these and other current day observations into historical context and perhaps reveal mechanisms controlling them, a suite of paleo-proxies were used to analyze two high resolution cores collected on the 2005 HOTRAX expedition. The goals of this research were: (1) develop an analytical method for determining biogenic calcite, (2) identify the major sources of biogenic matter into the system over the Holocene, and (3) assemble the history …

Light Scattering In Ultracold High Density Rubidium Vapor, Salim Balik

Physics Theses & Dissertations

Recent developments in laser cooling and trapping opened the door to a world full of new opportunities for research in atomic, molecular and optical physics as well as condensed matter physics. It became possible to do experiments under conditions that are hard to achieve in condensed matter systems but recently have been observed in atomic systems. Bose Einstein Condensation, the Mott insulator transition, and superfluidity are examples of such achievements. Another considerable interest to both condensed matter and atomic physics is Anderson localization of light. The localization phenomenon is named after P. W. Anderson who suggested the possibility of localization …

Ecology Of Neotropical Arboreal Snakes And Behavior Of New World Mollusk-Eating Snakes, Julie M. Ray

Biological Sciences Theses & Dissertations

The Neotropics is a biologically diverse region that provides man opportunities for ecological and behavioral studies. I utilized the speciose ophidian fauna of central Panama to explore the general ecology of arboreal snakes, the defensive behaviors of the snake community, and the diet of mollusk-eating snakes. I studied arboreal species to understand interspecilic relationships in several morphometric characters and to examine preferences in habitat. There were significant morphometric differences in relative length of jaw, mass, tail length, and size at midbody. The arboreal realm was partitioned among species by distance to ground, distance to water, and diameter of the perch. …

Interconnections Of Nonlinear Systems Driven By L₂-Itô Stochastic Processes, Luis A. Duffaut Espinosa

Electrical & Computer Engineering Theses & Dissertations

Fliess operators have been an object of study in connection with nonlinear systems acting on deterministic inputs since the early 1970's. They describe a broad class of nonlinear input-output maps using a type of functional series expansion, but in most applications, a system's inputs have noise components. In such circumstances, new mathematical machinery is needed to properly describe the input-output map via the Chen-Fliess algebraic formalism. In this dissertation, a class of L₂-Itô stochastic processes is introduced specifically for this purpose. Then, an extension of the Fliess operator theory is presented and sufficient conditions are given under which …

Export Of Terrestrial Dissolved Organic Matter Along A River To Ocean Transect Of The Lower Chesapeake Bay Investigated By Advanced Analytical Techniques, Rachel Leigh Sleighter

Chemistry & Biochemistry Theses & Dissertations

Ultrahigh resolution electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) has proved essential for the complete separation of the thousands of peaks present in natural organic matter (NOM), a complex assemblage of organic molecules present in water, soils, and sediments. An improved understanding of its composition is crucial to understand how pollutants interact with NOM and how NOM cycles through global carbon cycles.

Optimizing the acquisition and handling of the FTICR mass spectra is the first step to obtaining high quality data. A simple method to internally calibrate the peaks in the complex spectra, using naturally present fatty …

Spin Structure Of The Deuteron, Nevzat Guler

Physics Theses & Dissertations

Double spin asymmetries for the proton and the deuteron have been measured in the EG1b experiment using the CLAS detector at Jefferson Lab. Longitudinally polarized electrons at energies 1.6, 2.5, 4.2 and 5.7 GeV were scattered from longitudinally polarized NH3 and ND3 targets. The double spin asymmetry A|| for the proton and the deuteron has been extracted from these data as a function of W and Q² with unprecedented precision. The virtual photon asymmetry A₁ and the spin structure function g1 can be calculated from these measurements by using parametrization to the world data for the virtual …

Neutron Structure Functions Measured With Spectator Tagging, Svyatoslav Tkachenko

Physics Theses & Dissertations

We know much less about the neutron than the proton due to the absence of free neutron targets. Neutron information has to be extracted from data on nuclear targets like deuterium. This requires corrections for off-shell and binding effects which are not known from first principles and therefore are model-dependent. As a consequence, the same data can be interpreted in different ways, leading to different conclusions about important questions such as the value of the d/u quark ratio at large momentum fraction x. The Barely Off-shell NUcleon Structure (BONUS) experiment at Jefferson Lab addressed this problem by tagging spectator protons …

Comparative Study Of Forward And Diffusely Scattered Light In A Coherently Prepared Ultracold Rubidium Gas, Rocio Gisel Olave Gonzalez

Physics Theses & Dissertations

A comparison between forward and diffusely scattered light propagating in a coherently prepared ultracold ⁸⁷Rb atomic vapor is presented. This research is part of the ongoing effort to characterize the processes, such as diffusion, that contribute to coherence loss in atomic media under conditions of electromagnetically induced transparency, for applications in realistic systems. Toward this end, a magneto optical trap (MOT) of ⁸⁷Rb has been built, and the atomic vapor sample characterized in terms of atomic density, shape and size, temperature, and optical depth. Next, two co-propagating beams were sent through the sample, to establish an electromagnetically induced …

A Subspace Projection Methodology For Nonlinear Manifold Based Face Recognition, Praveen Sankaran

Electrical & Computer Engineering Theses & Dissertations

A novel feature extraction method that utilizes nonlinear mapping from the original data space to the feature space is presented in this dissertation. Feature extraction methods aim to find compact representations of data that are easy to classify. Measurements with similar values are grouped to same category, while those with differing values are deemed to be of separate categories. For most practical systems, the meaningful features of a pattern class lie in a low dimensional nonlinear constraint region (manifold) within the high dimensional data space. A learning algorithm to model this nonlinear region and to project patterns to this feature …

High-Performance Broadcast And Multicast Protocols For Multi-Radio Multi-Channel Wireless Mesh Networks, Jun Wang

Electrical & Computer Engineering Theses & Dissertations

Recently, wireless mesh networks (WMNs) have attracted much attention. A vast amount of unicast, multicast and broadcast protocols has been developed for WMNs or mobile ad hoc networks (MANETs). First of all, broadcast and multicast in wireless networks are fundamentally different from the way in which wired networks function due to the well-known wireless broadcast/multicast advantage. Moreover, most broadcast and multicast protocols in wireless networks assume a single-radio single-channel and single-rate network model, or a generalized physical model, which does not take into account the impact of interference. This dissertation focuses on high-performance broadcast and multicast protocols designed for multi-radio …

Dc Electrokinetic Transport Of Cylindrical Cells In Straight Microchannels, Ye Ai, Ali Beskok, David T. Gauthier, Sang W. Joo, Shizhi Qian

Biological Sciences Faculty Publications

Electrokinetic transport of cylindrical cells under dc electric fields in a straight microfluidic channel is experimentally and numerically investigated with emphasis on the dielectrophoretic (DEP) effect on their orientation variations. A two-dimensional multiphysics model, composed of the Navier-Stokes equations for the fluid flow and the Laplace equation for the electric potential defined in an arbitrary Lagrangian-Eulerian framework, is employed to capture the transient electrokinetic motion of cylindrical cells. The numerical predictions of the particle transport are in quantitative agreement with the obtained experimental results, suggesting that the DEP effect should be taken into account to study the electrokinetic transport of …

Imaging-Based Parametric Resonance In An Optical Dipole-Atom Trap, S. Balik, A. L. Win, M. D. Havey

Physics Faculty Publications

We report sensitive detection of parametric resonances in a high-density sample of ultracold ⁸⁷Rb atoms confined to a far-off-resonance optical dipole trap. Fluorescence imaging of the expanded ultracold atom cloud after a period of parametric excitation shows significant modification of the atomic spatial distribution and has high sensitivity compared with traditional measurements of parametrically driven trap loss. Using this approach, a significant shift of the parametric resonance frequency is observed and attributed to the anharmonic shape of the dipole trap potential. 2009 The American Physical Society.

Energy And System Size Dependence Of Φ Meson Production In Cu + Cu And Au + Au Collisions, B. I. Abelev, M. M. Aggarwal, Z. Ahammed, B. D. Anderson, D. Arkhipkin, G. S. Averichev, Y. Bai, J. Balewski, O. Barannikova, L. S. Barnby, S. Bültmann

Physics Faculty Publications

We study the beam-energy and system-size dependence of ϕ meson production (using the hadronic decay mode ϕ → K ⁺ K ⁻ ) by comparing the new results from Cu + Cu collisions and previously reported Au + Au collisions at √^sNN = 62.4 and 200 GeV measured in the STAR experiment at RHIC. Data presented in this Letter are from mid-rapidity ( | y | < 0.5 ) for 0.4 < PT < 5 GeV /c . At a given beam energy, the transverse momentum distributions for ϕ mesons are observed to be similar in yield and shape for Cu + Cu and Au + …

New Compact Tem-Type Deflecting And Crabbing Rf Structure, J. R. Delayen, H. Wang

Physics Faculty Publications

A new type of rf structure for the deflection and crabbing of particle beams is presented. The structure is comprised of a number of parallel TEM resonant lines operating in opposing phase from each other. One of its advantages is its compactness compared to conventional crabbing cavities operating in the TM₁₁₀ mode, thus allowing low frequency designs. This geometry would also be effective for the deflection of beams propagating at velocities substantially less than that of light.

Moments Of The Spin Structure Functions G(1)(P) And G(1)(D) For 0.05 < Q2 < 3.0 Gev2, Clas Collaboration, Y. Prok, K. V. Dharmawardane, G. E. Dodge, S. E. Kuhn, M. J. Amaryan, H. Bagdasaryan, M. Bektasoglu, S. Bültmann, S. L. Careccia, G. Gavalian, N. Guler, C. E. Hyde-Wright, H. G. Juengst, N. Kalantarians, A. Klein, J. Lachniet, R. A. Niyazov, L. M. Qin, S. Sabatie, S. Tkachenko, L. B. Weinstein, J. Zhang

Physics Faculty Publications

The spin structure functions g1 for the proton and the deuteron have been measured over a wide kinematic range in x and Q² using 1.6 and 5.7 GeV longitudinally polarized electrons incident upon polarized NH3 and ND3 targets at Jefferson Lab. Scattered electrons were detected in the CEBAF Large Acceptance Spectrometer, for 0.05 < Q² < 5GeV² and W < 3 GeV. The first moments of g1 for the proton and deuteron are presented – both have a negative slope at low Q², as predicted by the extended Gerasimov–Drell–Hearn sum rule. The first extraction of the generalized forward spin polarizability of the proton γ p 0 the Q² evolution of the first moment of g1 shows agreement in leading order with Heavy …

Virtual Compton Scattering And Neutral Pion Electroproduction In The Resonance Region Up To The Deep Inelastic Region At Backward Angles, G. Laveissiere, N. Degrande, S. Jaminion, C. Jutier, L. Todor, G. E. Dodge, C. E. Hyde, K. Mccormick, P. E. Ulmer, L. B. Weinstein, Jefferson Lab Hall A Collaboration

Physics Faculty Publications

We have made the first measurements of the virtual Compton scattering (VCS) process via the H(e, e′p)γ exclusive reaction in the nucleon resonance region, at backward angles. Results are presented for the W-dependence at fixed Q²=1 GeV² and for the Q² dependence at fixed W near 1.5 GeV. The VCS data show resonant structures in the first and second resonance regions. The observed Q² dependence is smooth. The measured ratio of H(e, e′p)γ to H(e, e′p)π⁰ cross sections emphasizes the different sensitivity of these two reactions to the various nucleon resonances. Finally, when compared …

Measurement Of Semi-Inclusive Π+ Electroproduction Off The Proton, Clas Collaboration, M. J. Amaryan, H. Bagdasaryan, M. Bektasoglu, S. Bültmann, K. V. Dharmawardane, G. E. Dodge, G. Gavalian, N. Guler, C. E. Hyde-Wright, A. Klein, A. V. Klimenko, S. E. Kuhn, M. R. Niroula, L. M. Qin, L. B. Weinstein, J. Zhang

Physics Faculty Publications

Semi-inclusive π+ electroproduction on protons has been measured with the CLAS detector at Jefferson Lab. The measurement was performed on a liquid-hydrogen target using a 5.75 GeV electron beam. The complete five-fold differential cross sections were measured over a wide kinematic range including the complete range of azimuthal angles between hadronic and leptonic planes, ϕ , enabling us to separate the ϕ-dependent terms. Our measurements of the ϕ -independent term of the cross section at low Bjorken x were found to be in fairly good agreement with pQCD calculations. Indeed, the conventional current fragmentation calculation can account for almost all …

Photodisintegration Of 4He Into P+T, Clas Collaboration, M. J. Amaryan, S. L. Careccia, G. E. Dodge, C. E. Hyde, S. E. Kuhn, M. Mayer, C. S. Nepali, M. R. Niroula, H. Seraydaryan, S. Tkachenko, L.B. Weinstein, J. Zhang

Physics Faculty Publications

The two-body photodisintegration of 4He into a proton and a triton has been studied using the CEBAF Large-Acceptance Spectrometer (CLAS) at the Thomas Jefferson National Accelerator Facility. Real photons produced with the Hall-B bremsstrahlung-tagging system in the energy range from 0.35 to 1.55 GeV were incident on a liquid ⁴He target. This is the first measurement of the photodisintegration of ⁴He above 0.4 GeV. The differential cross sections for the γ ⁴He →pt reaction were measured as a function of photon-beam energy and proton-scattering angle and are compared with the latest model calculations by J.-M. Laget. At …

Electroexcitation Of Nucleon Resonances From Clas Data On Single Pion Electroproduction, Clas Collaboration, K. P. Adhikari, S. L. Careccia, T. A. Forest, C. E. Hyde, A. Klein, S. E. Kuhn, M. Mayer, C. S. Nepali, M. R. Niroula, H. Seraydaryan

Physics Faculty Publications

We present results on the electroexcitation of the low mass resonances Δ(1232)P₃₃ , N(1440)P₁₁ , N(1520)D₁₃ , and N(1535)S₁₁ in a wide range of Q². The results were obtained in the comprehensive analysis of data from the Continuous Electron Beam Accelerator Facility (CEBAF) large acceptance spectrometer (CLAS) detector at the Thomas Jefferson National Accelerator Facility (JLab) on differential cross sections, longitudinally polarized beam asymmetries, and longitudinal target and beam-target asymmetries for π electroproduction off the proton. The data were analyzed using two conceptually different approaches—fixed-t dispersion relations and a unitary isobar model—allowing us to …

Precise Measurement Of The Neutron Magnetic Form Factor Gnm In The Few-Gev² Region, Clas Collaboration, J. Lachniet, H. Bagdasaryan, S. Bültmann, N. Kalantarians, G. E. Dodge, T. A. Forest, G. Gavalian, C. E. Hyde-Wright, A. Klien, S. E. Kuhn, M. R. Niroula, R. A. Niyazov, L. M. Qin, L. B. Weinstein, J. Zhang

Physics Faculty Publications

The neutron elastic magnetic form factor was extracted from quasielastic electron scattering on deuterium over the range Q² = 1.0–4.8  GeV² with the CLAS detector at Jefferson Lab. High precision was achieved with a ratio technique and a simultaneous in situ calibration of the neutron detection efficiency. Neutrons were detected with electromagnetic calorimeters and time-of-flight scintillators at two beam energies. The dipole parametrization gives a good description of the data

Measurement Of Direct Fₒ(980) Photoproduction On The Proton, K. P. Adhikari, H. Bagdasaryan, S. Bültmann, S. L. Careccia, K. V. Dharmawardane, G. E. Dodge, N. Kalantarians, A. Klein, A.V. Klimenko, S. E. Kuhn, J. Lanchiet, M. R. Niroula, J. Zhang

Physics Faculty Publications

We report on the results of the first measurement of exclusive f₀(980) meson photoproduction on protons for E_γ = 3.0–3.8  GeV and −t = 0.4–1.0  GeV² . Data were collected with the CLAS detector at the Thomas Jefferson National Accelerator Facility. The resonance was detected via its decay in the π⁺π⁻ channel by performing a partial wave analysis of the reaction γp→pπ⁺π⁻ . Clear evidence of the f₀(980) meson was found in the interference between P and S waves at M _π+π− ∼1  GeV. The S -wave differential …

Electroproduction Of P Π⁺Π⁻ Off Protons At 0.2 < Q² < 0.6 Gev² And 1.3 < W < 1.57 Gev With The Clas Detector, M. J. Amaryan, H. Baghdasaryan, M. Bektasoglu, S. Bültmann, S. L. Careccia, G. E. Dodge, G. Gavalian, N. Guler, C. E. Hyde, W. Kim, A. Klein, F. J. Klein, A. Klimenko, S. E. Kuhn, S. Tkachenko, L. B. Weinstein, Et Al., Clas Collaboration

Physics Faculty Publications

This paper reports on the most comprehensive data set obtained on differential and fully integrated cross sections for the process ep → e'pπ⁺π^-. The data were collected with the CLAS detector at Jefferson Laboratory. Measurements were carried out in the as yet unexplored kinematic region of photon virtuality 0.2 < Q² < 0.6 GeV² and invariant mass of the final hadron system W from 1.3 to 1.57 GeV. For the first time, nine independent one-fold differential cross sections were determined in each bin of W and Q² covered by the measurements. A phenomenological analysis of the data allowed …

Design Optimization Of Superconducting Parallel-Bar Cavities, Subashini De Silva, Jean R. Delayen

Physics Faculty Publications

The parallel-bar structure is a new superconducting geometry whose features and properties may have significant advantages over conventional superconducting deflecting and crabbing cavities for a number of applications. Jefferson Lab is in need for a 499 MHz, 11 GeV rf separator as part of its 12 GeV upgrade program. We report on design optimization studies performed todate for this and other applications.

A New Tem-Type Deflecting And Crabbing Rf Structure, Jean R. Delayen, H. Wang

Physics Faculty Publications

A new type of rf structure for the deflection and crabbing of particle bunches is introduced. It is comprised of a number of parallel TEM-resonant lines operating in opposite phase from each other. One of its main advantages is its compactness compared to conventional crabbing cavities operating in the TM110 mode, thus allowing low frequency designs. The properties and characteristics of this type of structure are presented.

Multicast Encryption Infrastructure For Security In Sensor Networks, Richard R. Brooks, Brijesh Pillai, Matthew Pirretti, Michele C. Weigle

Computer Science Faculty Publications

Designing secure sensor networks is difficult. We propose an approach that uses multicast communications and requires fewer encryptions than pairwise communications. The network is partitioned into multicast regions; each region is managed by a sensor node chosen to act as a keyserver. The keyservers solicit nodes in their neighborhood to join the local multicast tree. The keyserver generates a binary tree of keys to maintain communication within the multicast region using a shared key. Our approach supports a distributed key agreement protocol that identifies the compromised keys and supports membership changes with minimum system overhead. We evaluate the overhead of …

Dynamic Adaptation Of Joint Transmission Power And Contention Window In Vanet, Danda B. Rawat, Gongjun Yan, Dimitrie C. Popescu, Michele C. Weigle, Stephan Olariu

Electrical & Computer Engineering Faculty Publications

In this paper, we propose an algorithm for joint adaptation of transmission power and contention window to improve the performance of vehicular network in a cross layer approach. The high mobility of vehicles in vehicular communication results in the change in topology of the Vehicular Ad-hoc Network (VANET) dynamically, and the communication link between two vehicles might remain active only for short duration of time. In order for VANET to make a connection for long time and to mitigate adverse effects due to high and fixed transmission power, the proposed algorithm adapts transmission power dynamically based on estimated local traffic …

Electrospray And Photoionization Mass Spectrometry For The Characterization Of Organic Matter In Natural Waters: A Qualitative Assessment, William C. Hockaday, Jeremiah M. Pucell, Alan G. Marshall, Jeffery A. Baldock, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

Fourier-transform ion cyclotron resonance mass spectrometry (MS) has demonstrated potential to revolutionize the fields of limnology and chemical oceanography by identifying the individual molecular components of organic matter in natural waters. The use of MS for this purpose is made possible by the electrospray technique which successfully ionizes polar, nonvolatile organic molecules. Another recently developed ion source, atmospheric pressure photoionization (APPI), extends MS capabilities to less polar molecules. This article presents early results on the application of APPI MS to natural organic matter. We compare APPI MS and electrospray MS data for dissolved organic matter from Lake Drummond (Virginia, USA). …

Photochemical Degradation Of Dissolved Organic Matter And Dissolved Lignin Phenols From The Congo River, Robert G. M. Spencer, Aron Stubbins, Peter J. Hernes, Kenneth Mopper, Anthony K. Aufdenkampe, Rachael Y. Dyda, Vincent L. Mwamba, Arthur M. Mangangu, Jose N. Wabakanghanzi, Johan Six

Chemistry & Biochemistry Faculty Publications

Photochemical degradation of Congo River dissolved organic matter (DOM) was investigated to examine the fate of terrigenous DOM derived from tropical ecosystems. Tropical riverine DOM receives greater exposure to solar radiation, particularly in large river plumes discharging directly into the open ocean. Initial Congo River DOM exhibited dissolved organic carbon (DOC) concentration and compositional characteristics typical of organic rich blackwater systems. During a 57 day irradiation experiment, Congo River DOM was shown to be highly photoreactive with a decrease in DOC, chromophoric DOM (CDOM), lignin phenol concentrations (Σ8) and carbon-normalized yields (Λ8), equivalent to losses of ~45, 85–95, >95 and …

Multiple Imputation To Correct For Measurement Error In Admixture Estimates In Genetic Structured Association Testing, Miguel A. Padilla, Jamin Divers, Laura K. Vaughan, David B. Allison, Hemant K. Tiwari

Psychology Faculty Publications

Objectives: Structured association tests ( SAT), like any statistical model, assumes that all variables are measured without error. Measurement error can bias parameter estimates and confound residual variance in linear models. It has been shown that admixture estimates can be contaminated with measurement error causing SAT models to suffer from the same afflictions. Multiple imputation (MI) is presented as a viable tool for correcting measurement error problems in SAT linear models with emphasis on correcting measurement error contaminated admixture estimates. Methods: Several MI methods are presented and compared, via simulation, in terms of controlling Type I error rates for both …