Physical Sciences and Mathematics Commons^™

Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu

OES Faculty Publications

In this study we estimate sediment carbonate dissolution rates for sandy sea grass sediments on the Bahamas Bank using an inverse pore-water advection/diffusion/reaction model constrained by field observations. This model accounts for sea grass O₂ input to these sediments, and also parameterizes pore-water advection through these permeable sediments as a nonlocal exchange process. The resulting rates of carbonate dissolution are positively correlated with sea grass density, and are comparable with previous rate estimates for Florida Bay sediments. In contrast, the advective uptake of O₂ by these sediments decreased with increasing sea grass density. This suggests that the competing …

Radiocarbon Evidence For The Importance Of Surface Vegetation On Fermentation And Methanogenesis In Contrasting Types Of Boreal Peatlands, J. P. Chanton, P. H. Glaser, L. S. Chasar, David J. Burdige, M. E. Hines, D. I. Seigel, L. B. Tremblay, W. T. Cooper

OES Faculty Publications

We found a consistent distribution pattern for radiocarbon in dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and methane replicated across spatial and temporal scales in northern peatlands from Minnesota to Alaska. The ¹⁴C content of DOC is relatively modern throughout the peat column, to depths of 3 m. In sedge-dominated peatlands, the ¹⁴C contents of the products of respiration, CH₄ and DIC, are essentially the same and are similar to that of DOC. In Sphagnum- and woody plant-dominated peatlands with few sedges, however, the respiration products are similar but intermediate between the ¹⁴C contents of …

Reproducible Increased Mg Incorporation And Large Hole Concentration In Gan Using Metal Modulated Epitaxy, Shawn D. Burnham, Gon Namkoong, David C. Look, Bruce Clafin, W. Alan Doolittle

Electrical & Computer Engineering Faculty Publications

The metal modulated epitaxy (MME) growth technique is reported as a reliable approach to obtain reproducible large hole concentrations in Mg-doped GaN grown by plasma-assisted molecular-beam epitaxy on c-plane sapphire substrates. An extremely Ga-rich flux was used, and modulated with the Mg source according to the MME growth technique. The shutter modulation approach of the MME technique allows optimal Mg surface coverage to build between MME cycles and Mg to incorporate at efficient levels in GaN films. The maximum sustained concentration of Mg obtained in GaN films using the MME technique was above 7 × 10²⁰ cm^{-3 …}

Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio

OES Faculty Publications

The Southern Ocean exerts a strong impact on marine biogeochemical cycles and global air-sea CO₂ fluxes. Over the coming century, large increases in surface ocean CO₂ levels, combined with increased upper water column temps. and stratification, are expected to diminish Southern Ocean CO₂ uptake. These effects could be significantly modulated by concomitant CO₂-dependent changes in the region's biol. carbon pump. Here we show that CO₂ concentrations affect the physiology, growth and species composition. of phytoplankton assemblages in the Ross Sea, Antarctica. Field results from in situ sampling and ship-board incubation experiments demonstrate that inorganic …

The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju

OES Faculty Publications

The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …

Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett

OES Faculty Publications

We used the radiated shanny Ulvaria subbifurcataas a model species to explore the relative gut fullness from hatch to metamorphosis of wild larvae, and compared these values with those of laboratory-reared larvae fed at maximum rates. Ingestion rates of most wild larvae were above starvation levels but below the maximum feeding levels of laboratory-reared larvae. Twenty-six percent of freshly-hatched wild larvae and 11% of large, pre-settlement wild larvae had insufficient food in their stomach to satisfy metabolic requirements. These results, taken on their own, are consistent with the much hypothesized increased foraging performance and survival of larger larvae relative …

Towards A Metric For The Assessment Of Safety Critical Control Systems, Oscar R. Gonzalez, Jorge R. Chavez-Fuentes, W. Steven Gray

Electrical & Computer Engineering Faculty Publications

There is a need for better integration of the fault tolerant and the control designs for safety critical systems such as aircraft. The dependability of current designs is assessed primarily with measures of the interconnection of fault tolerant components: the reliability function and the mean time to failure. These measures do not directly take into account the interaction of the fault tolerant components with the dynamics of the aircraft. In this paper, a first step to better integrate these designs is made. It is based on the observation that unstable systems are intrinsically unreliable and that a necessary condition for …

Forcing And Dynamics Of Seafloor-Water Column Exchange On A Broad Continental Shelf, William B. Savidge, Ann Gargett, Richard A. Jahnke, James R. Nelson, Dana K. Savidge, R. Timothy Short, George Voulgaris

OES Faculty Publications

Relict sediments of elevated permeability characterize the majority of continental shelves globally (Emery, 1968). In these settings, interactions between benthic boundary layer (BBL) flows and seabed topography generate pressure fluctuations that drive advective and dispersive porewater transport, dramatically increasing the magnitude and variability of porewater solute and particulate exchange across the sediment-water interface (Huettel et al., 1996; Huettel and Rusch, 2000). On broad shallow shelves with a relatively large area-to-volume ratio, the seafloor’s role is magnified. Energetic events may reorganize bedforms across a significant fraction of the shelf, leading to altered exchange dynamics that may persist long after the organizing …

Arctic Perennial Ice Cover Over The Last 14 Million Years, Dennis A. Darby

OES Faculty Publications

Knowledge of the long-term history of the perennial ice is an important issue that has eluded study because the Cenozoic core material needed has been unavailable until the recent Arctic Coring Expedition (ACEX). Detrital Fe oxide mineral grains analyzed by microprobe from the last 14 Ma (164 m) of the ACEX composite core on the Lomonosov Ridge were matched to circum-Arctic sources with the same mineral and 12-element composition. These precise source determinations and estimates of drift rates were used to determine that these sand grains could not be rafted to the ACEX core site in less than a year. …

Impacts Of Chromophoric Dissolved Organic Material On Surface Ocean Heating In The Chukchi Sea, Victoria J. Hill

OES Faculty Publications

Recent observations show visible light attenuation in the Arctic Ocean to be greater than previously assumed. High attenuation observed during the period prior to ice melt and increased phytoplankton production, was attributed primarily to the high levels of absorption by chromophoric dissolved organic material ( CDOM) present in these waters. Preliminary evidence suggests this material is produced by ice algae in the early spring. Optical data from the Chukchi shelf system collected in the spring and summer of 2002, were used to model energy absorption in the mixed layer by both dissolved and particulate material. In the spring, absorption by …

Emergent Behavior In Massively-Deployed Sensor Networks, Ekaterina Shurkova, Ruzana Ishak, Stephan Olariu, Shaharuddin Salleh

Computer Science Faculty Publications

The phenomenal advances in MEMS and nanotechnology make it feasible to build small devices, referred to as sensors that are able to sense, compute and communicate over small distances. The massive deployment of these small devices raises the fascinating question of whether or not the sensors, as a collectivity, will display emergent behavior, just as living organisms do. In this work we report on a recent effort intended to observe emerging behavior of large groups of sensor nodes, like living cells demonstrate. Imagine a massive deployment of sensors that can be in two states "red" and "blue". At deployment time …

Turbulent Lifestyle: Microbial Mats On Earth’S Sandy Beaches—Today And 3 Billion Years Ago, Nora Noffke

OES Faculty Publications

Archean Earth history is very difficult to reconstruct. Until recently, only bacterial cells preserved in chert, microborings, and stromatolites provided the few clues to ancient life. Now, siliciclastic “microbially induced sedimentary structures” (MISS) are adding to our knowledge of both past life and paleoenvironments. MISS rise from the interaction of photoautotrophic microbial mats with physical sediment dynamics in siliciclastic, shallow-marine settings. Archean MISS can be understood through observations of living microbial mats and modern biotic-physical sedimentary processes. Such geobiological studies are key to the interpretation of the early evolution of prokaryotes. For example, the 2.9 Ga Pongola Supergroup, South Africa, …

Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs

OES Faculty Publications

As the international shipping fleet travels the oceans, it carries with it hidden cargoes of microbes. Fred C. Dobbs explores the hazards posed and what can be done to counteract them.

Dedication To Pierre Lallemand On The Occasion Of His Retirement, Dominque D'Humieres, Manfred Krafczyk, Li-Shi Luo, Robert Rubinstein

Mathematics & Statistics Faculty Publications

The fourth international conference for mesoscopic methods in engineering and science (http://www.icmmes. org), held in Munich, Germany, 16–20 July 2007, was closed with a celebration honouring Dr Pierre Lallemand on the occasion of his retirement from the Centre National de la Recherche Scientifique (CNRS) after more than 40 years of service.

Professor Gopal Kanji's Retirement As Editor Of Journal Of Applied Statistics, M. C. Agrawal, Steven B. Caudill, S. Chakraborti, Norman Draper, Ian Dryden, Joe Gani, Steven G. Gilmour, Z. Govindarajulu, David J. Hand, Dayanand Naik

Mathematics & Statistics Faculty Publications

(First paragraph) This. issue of Journal of Applied Statistics marks the first in its history which does not fall under the editorship of its founder Professor Gopal Kanji. Following his retirement from the role we would like to use this editorial to outline the history and development of the Journal and pay tribute to the many achievements of Gopal’s career.

Activation Energy Of Surface Diffusion And Terrace Width Dynamics During The Growth Of In (4×3) On Si (100) - (2×1) By Femtosecond Pulsed Laser Deposition, M. A. Hafez, H. E. Elsayed-Ali

Electrical & Computer Engineering Faculty Publications

The nucleation and growth of indium on a vicinal Si (100) - (2×1) surface at high temperature by femtosecond pulsed laser deposition was investigated by in situ reflection high energy electron diffraction (RHEED). RHEED intensity relaxation was observed for the first ∼2 ML during the growth of In (4×3) by step flow. From the temperature dependence of the rate of relaxation, an activation energy of 1.4±0.2 eV of surface diffusion was determined. The results indicate that indium small clusters diffused to terrace step edges with a diffusion frequency constant of (1.0±0.1) × 10¹¹ s^-1. The RHEED specular …

Nonthermal Laser-Induced Formation Of Crystalline Ge Quantum Dots On Si(100), M. S. Hegazy, H. E. Elsayed-Ali

Electrical & Computer Engineering Faculty Publications

The effects of laser-induced electronic excitations on the self-assembly of Ge quantum dots on Si (100) - (2×1) grown by pulsed laser deposition are studied. Electronic excitations due to laser irradiation of the Si substrate and the Ge film during growth are shown to decrease the roughness of films grown at a substrate temperature of ∼120 °C. At this temperature, the grown films are nonepitaxial. Electronic excitation results in the formation of an epitaxial wetting layer and crystalline Ge quantum dots at ∼260 °C, a temperature at which no crystalline quantum dots form without excitation under the same deposition conditions. …

Electron Density And Temperature Measurement Of An Atmospheric Pressure Plasma By Millimeter Wave Interferometer, Xinpei Lu, Mounir Laroussi

Electrical & Computer Engineering Faculty Publications

In this paper, a 105 GHz millimeter wave interferometer system is used to measure the electron density and temperature of an atmospheric pressure helium plasma driven by submicrosecond pulses. The peak electron density and electron-neutral collision frequency reach 8 X 10¹² cm^-3 and 2.1 X 10¹² s^-1, respectively. According to the electron-helium collision cross section and the measured electron-neutral collision frequency, the electron temperature of the plasma is estimated to reach a peak value of about 8.7 eV.

Rapid Prototyping For Virtual Environments, Emre Baydogan

Electrical & Computer Engineering Theses & Dissertations

Development of Virtual Environment (VE) applications is challenging where application developers are required to have expertise in the target VE technologies along with the problem domain expertise. New VE technologies impose a significant learning curve to even the most experienced VE developer. The proposed solution relies on synthesis to automate the migration of a VE application to a new unfamiliar VE platform/technology. To solve the problem, the Common Scene Definition Framework (CSDF) is developed, that serves as a superset/model representation of the target virtual world. Input modules are developed to populate the framework with the capabilities of the virtual world …

Transverse Structure Of Wind-Driven Flow At The Entrance To An Estuary: Nansemond River, Diego A. Narváez, Arnoldo Valle-Levinson

CCPO Publications

Observations of current velocity profiles were combined with an analytical solution to study the transverse partition of the wind-driven flow in an estuary, the Nansemond River, which is a tributary of the James River in the Chesapeake Bay. Observations spanned two periods of nearly 3 months in autumn-winter of 2003-2004 and spring-summer 2004. The wind-driven circulation consisted of downwind flow over the shoal and upwind flow in the channel at the entrance to the estuary. This pattern developed mainly with landward winds and provided observational evidence that sustains analytical and numerical model results. The transverse structure of the flow showed …

Metal Modulation Epitaxy Growth For Extremely High Hole Concentrations Above 10(19) Cm(-3) In Gan, Gon Namkoong, Elaissa Trybus, Kyung Keun Lee, Michael Moseley, W. Alan Doolittle, David C. Look

Applied Research Center Publications

The free hole carriers in GaN have been limited to concentrations in the low 10¹⁸ cm⁻³ range due to the deep activation energy, lower solubility, and compensation from defects, therefore, limiting doping efficiency to about 1%. Herein, we report an enhanced doping efficiency up to ~10% in GaN by a periodic doping, metal modulation epitaxy growth technique. The hole concentrations grown by periodically modulating Ga atoms and Mg dopants were over ~1.5 x 10¹⁹ cm⁻³.

© 2008 American Institute of Physics.

Circulation, Vol. 14, No. 3, Center For Coastal Physical Oceanography, Old Dominion University, S. Sackett, J. L. Blanco

CCPO Circulation

Fall 2007 issue of CCPO Circulation featuring article "Analysis of Time Series Data from the Chesapeake Bay Mouth Cruises" by S. Sackett and J. L. Blanco

Bactericidal Effects Of Cold Plasma Technology On Geobacillus Stearothermophilus And Bacillus Cereus Microorganisms, Angela D. Morris, Gayle B. Mccombs, Susan L. Tolle, Mounir Laroussi, Wayne L. Hynes

Dental Hygiene Faculty Publications

Cold plasma is a state of matter that contains a large number of particles that are electrically charged. Plasmas generate chemically reactive species and ultraviolet radiation making them useful in decontamination applications (Kong & Laroussi, 2003). Research regarding the inactivation of gram-positive bacteria by cold plasma has been studied by Laroussi et al (2003); however, there is limited research regarding the germicidal effectiveness of cold plasma on Geobacillus stearothermophilus and Bacillus cereus microorganisms. The purpose of this study was to determine if cold plasma technology inactivates Geobacillus stearothermophilus and Bacillus cereus vegetative cells and spores. This study consisted of 981 …

Lazy Preservation: Reconstructing Websites From The Web Infrastructure, Frank Mccown

Computer Science Theses & Dissertations

Backup or preservation of websites is often not considered until after a catastrophic event has occurred. In the face of complete website loss, webmasters or concerned third parties have attempted to recover some of their websites from the Internet Archive. Still others have sought to retrieve missing resources from the caches of commercial search engines. Inspired by these post hoc reconstruction attempts, this dissertation introduces the concept of lazy preservation{ digital preservation performed as a result of the normal operations of the Web Infrastructure (web archives, search engines and caches). First, the Web Infrastructure (WI) is characterized by its preservation …

Salt Fluxes At The Chesapeake Bay Entrance, Ruth Lane

OES Theses and Dissertations

Underway measurements of salinity and flow profiles were used to compute salt fluxes at the mouth of the Chesapeake Bay in spring and summer. Waters were sampled along a cross-bay transect over four tidal cycles in 1997: at the end of April, during neap tides, and in mid-July, during spring tides. Data were interpolated onto a uniform grid along the transect area. A least squares regression with semidiurnal and diurnal harmonics was fit on both salinity and flow at each point of the grid to separate tidal from non-tidal influences. The results of the least squares fit were used to …

Distributed Cluster-Based Outlier Detection In Wireless Sensor Networks, Swetha Gali

Electrical & Computer Engineering Theses & Dissertations

Wireless sensor networks find several potential applications in a variety of fields, such as environmental monitoring and control, battlefields, surveillance, smart buildings, human health monitoring, etc. These sensor networks consist of a large number of very tiny, inexpensive, and low power sensor nodes, which are deployed in a variety of harsh environments that may result in the sensor data getting corrupted. It is thus critical to detect and report these abnormal values in the sensor data, in order to have a better understanding of the monitored environment. Detection of the abnormal values is of special interest for the sensor network …

Limb Regeneration After Multiple Autotomy And Coxae Removal In The Blue Crab Callinectes Sapidus, Jennifer Ambler

OES Theses and Dissertations

This study investigated limb regeneration in the juvenile blue crab, Callinectes sapidus, specifically the role of the coxa and pedal nerve innervation of the regenerative limb bud over time. The coxa is a leg segment that has been defined as the source of positional, cellular, and neuronal information needed for limb regeneration in brachyuran crabs. This study indicates that removal of coxae under regenerative and non-regenerative conditions did not deter limb regeneration. The coxa is not the exclusive location of limb regenerative information since limbs re-grew with normal positional and functional arrangement in 86% of crabs showing regeneration at removal …

An Adaptive And Non-Linear Technique For Enhancement Of High Contrast Images, Saibabu Arigela

Electrical & Computer Engineering Theses & Dissertations

In night time surveillance, there is a possibility of having extremely bright and dark regions in some image frames of a video sequence. Neither the object details in the low intensity areas nor in the high intensity areas can be clearly interpreted. Several image processing techniques have been developed to retrieve meaningful information under low lighting conditions. The algorithm based on integrated neighborhood dependency of pixel characteristics, and that based on the illuminance reflectance model perform well for improving the visual quality of digital images captured under extremely low and nonuniform lighting conditions. But these techniques cannot perform well in …

Radical Impact Of Change In Actions And Confidence Index On Reverse Decision Making An Application Based Study, Swatee Trimbak Paithankar

Engineering Management & Systems Engineering Theses & Dissertations

While making decisions under uncertainty, people are often unaware of the logical approach to form the decision process. It is assumed that collecting details, analyzing and evaluating data is enough to make 'proper' decisions. However, past research in the decision making arena has significantly validated that there exists a class of decision problems which is complex, ill-structured and not defined to the level where decision makers can draw logical conclusions based on existing traditional decision approaches. RDM (reverse decision making), one of the novel approaches of decision making under conditions of uncertainty, has shown potential towards addressing some of these …

Parmela Based Simulations On Jefferson Lab Free Electron Laser Injector, Deepesh Kumar Koppunuru

Electrical & Computer Engineering Theses & Dissertations

Free Electron Lasers (FELs) have many applications and are under continuing development to meet various needs and in areas from materials processing to life sciences research. This is because of its unique capability of generating high-average power, coherent, and wavelength tunable light by employing relativistic beam of un-bounded electrons. The main challenge in FEL development is the generation of a high intensity, high-quality electron beam in an injector. Further acceleration to relativistic energies is accomplished in a linear accelerator (LINAC) for producing laser light in a device known as wiggler. The Jefferson Lab FEL team intents to increase the injector …