Physical Sciences and Mathematics Commons^™

Empirically Derived Thermal Thresholds Of Four Coral Species Along The Red Sea Using A Portable And Standardized Experimental Approach, Nicolas R. Evensen, Christian R. Voolstra, Maoz Fine, Gabriela Perna, Carol Buitrago-López, Anny Cárdenas, Guilhem Banc-Prandi, Katherine Rowe, Daniel J. Barshis

Biological Sciences Faculty Publications

Global warming is causing an unprecedented loss of species and habitats worldwide. This is particularly apparent for tropical coral reefs, with an increasing number of reefs experiencing mass bleaching and mortality on an annual basis. As such, there is a growing need for a standardized experimental approach to rapidly assess the thermal limits of corals and predict the survival of coral species across reefs and regions. Using a portable experimental system, the Coral Bleaching Automated Stress System (CBASS), we conducted standardized 18 h acute thermal stress assays to quantitively determine the upper thermal limits of four coral species across the …

Diabetic Foot Exam System, Stephanie Trusty

Undergraduate Research Symposium

The diabetic foot exam system aims to perform certain aspects of the dermatological and musculoskeletal assessments that are typical to a 3-minute diabetic foot exam. Utilizing the RaspberryPi computer and camera module, the system seeks to capture a series of images of the patient’s foot. It then evaluates these images for calluses, blisters, and three types of deformities: claw toe deformities, hammertoe deformities, and bunions. This evaluation is performed using a trained TensorFlow image classification model, which categorizes the image as a callus, blister, or deformity. The system was tested using six different images: four callus images, a hammertoe deformity …

Covid-19 Classroom Occupancy Detection System, Stephanie Trusty

Undergraduate Research Symposium

The classroom occupancy detection system aims to limit the spread of COVID-19 and support mitigation efforts advised by national and international health organizations by enforcing social distancing in classroom environments. Utilizing the RaspberryPi computer and its compatible camera module, the system accomplishes this by capturing an overhead image of a classroom and assessing the image for violations. Here, violations are defined as the presence of adjacent occupied seats. As such, for an acceptable state to be detected, there must be at least one vacant seat between all students seated in the classroom. The system communicates the classroom’s state with two …

Two-Stage Transfer Learning For Facial Expression Classification In Children, Gregory Hubbard, Megan Witherow, Khan Iftekharuddin

Undergraduate Research Symposium

Studying facial expressions can provide insight into the development of social skills in children and provide support to individuals with developmental disorders. In afflicted individuals, such as children with Autism Spectrum Disorder (ASD), atypical interpretations of facial expressions are well-documented. In computer vision, many popular and state-of-the-art deep learning architectures (VGG16, EfficientNet, ResNet, etc.) are readily available with pre-trained weights for general object recognition. Transfer learning utilizes these pre-trained models to improve generalization on a new task. In this project, transfer learning is implemented to leverage the pretrained model (general object recognition) on facial expression classification. Though this method, the …

Objective Measure Of Working Memory Capacity Using Eye Movements, James Owens, Gavindya Jayawardena, Yasasi Abeysinghe, Vikas G. Ashok, Sampath Jayarathna

Undergraduate Research Symposium

Human-autonomy teaming (HAT) has become an important area of research due to the autonomous systems being developed for different applications, such as remotely controlled aircraft. Many remotely controlled vehicles will be controlled by automated systems, with a human monitor that may be monitoring multiple vehicles simultaneously. The attention and working memory capacity of operators of remote-controlled vehicles must be maintained at appropriate levels during operation. However, there is currently no direct method of determining working memory capacity, which is important because it is a measure for how memory is being stored for a short term and interacting with long term …

Oxidation Of Thiols To Disulfides Using An Environmentally “Green” Organocatalyst And New Mechanistic Insights, Kosta V. Vlasakakis, Olivia M. White, Robert P. Reynolds, Shayne M. Weierbach, Shannon M. Weaver, Ramsey T. Ritter, Nishi H. Patel, Eric C. Hayes, Sydney Dunmire, Kyle M. Lambert

Undergraduate Research Symposium

The selective oxidation of thiols to disulfides is an area of great importance in the areas of materials and medicinal chemistry research. The production of polymers, rubber, pharmaceuticals, and the folding of proteins in biological systems all rely on the formation of disulfide bonds. Herein, we introduce a stoichiometric and electrocatalytic method for the oxidation of various pharmaceutically and biologically relevant thiols into their respective disulfides in more environmentally benign solvents such as water and alcohol solvents. The scope of the transformation was evaluated and a detailed mechanistic study involving control experiments, experimental kinetic studies, and computational investigations led to …

Access To Nitrogen Heterocycles Via Borrowing Hydrogen Catalysis, Robert P. Reynolds, Kellen P. Mcguire, Conor T. Mccormick, Kyle M. Lambert

Undergraduate Research Symposium

Nitrogen heterocycles are ubiquitous motifs which occur as the core structure of several alkaloid natural products exhibiting inherent biological activity against an array of bacteria, fungi, viruses, and cancer cell lines. These azacycles serve as key synthetic building blocks for medicinal chemists to access more structurally complex and diverse compounds with tunable biological properties. A synthetic approach to these valuable motifs employing intramolecular borrowing hydrogen catalysis has been developed. The utility of the developed chemistry will be applied to synthetic efforts towards the recently isolated Cylicomorphins A-E.

Monitoring Extinction Risk And Threats Of The World's Fishes Based On The Sampled Red List Index, Rafael Miranda, Imanol Miqueleiz, William Darwall, Catherine Sayer, Nicholas K. Dulvy, Kent E. Carpenter, Beth Polidoro, Nadia Dewhurst-Richman, Caroline Pollock, Craig Hilton-Taylor, Robin Freeman, Ben Collen, Monika Böhm

Biological Sciences Faculty Publications

Global biodiversitytargets require us to identify species at risk of extinction and quantify status and trends of biodiversity. The Red List Index (RLI) tracks trends in the conservation status of entire species groups over time by monitoring changes in categories assigned to species. Here, we calculate this index for the world’s fishes in 2010, using a sampled approach to the RLI based on a randomly selected sample of 1,500 species, and also present RLI splits for freshwater and marine systems separately. We further compare specific traits of a worldwide fish list to our sample to assess its representativeness. Overall, 15.1% …

Monarch Science Observer, Volume 13, College Of Sciences, Old Dominion University

College of Sciences Newsletter

Spring 2022, issue of Monarch Science Observer, ODU Colleges of Sciences Newsletter.

Habitat Restoration Restores Underwater Soundscapes And Larval Recruitment, Jack Butler, Emily R. Anderson, Mark J. Butler

Biological Sciences Faculty Publications

Habitat degradation alters many ecosystem processes, and the potential for the reestablishment of ecosystem function through restoration is an area of active research. Among marine systems, coastal habitats are particularly vulnerable to anthropogenic degradation and, in response, are the focus of marine ecological restoration. One of the crucial functions of structurally complex coastal habitats (e.g., saltmarshes, seagrass meadows, kelp forests, coral reefs) are as nurseries to coastal and offshore species, many of whose larvae utilize sound to locate suitable nursery habitat. However, the effect of habitat degradation and subsequent restoration on underwater soundscapes and their function as navigational cues for …

Natural Phaeosphaeride A Derivatives Overcome Drug Resistance Of Tumor Cells And Modulate Signaling Pathways, Victoria Abzianidze, Natalia Moiseeva, Diana Suponina, Sofya Zakharenkova, Nadezhda Rogovskaya, Lidia Laletina, Alvin A. Holder, Denis Krivorotov, Alexander Bogachenkov, Alexander Garabadzhiu, Anton Ukolov, Vyacheslav Kosorukov

Chemistry & Biochemistry Faculty Publications

n the present study, natural phaeosphaeride A (PPA) derivatives are synthesized. Anti-tumor studies are carried out on the PC3, K562, HCT-116, THP-1, MCF-7, A549, NCI-H929, Jurkat, and RPMI8226 tumor cell lines, and on the human embryonic kidney (HEK293) cell line. All the compounds synthesized turned out to have better efficacy than PPA towards the tumor cell lines listed. Among them, three compounds exhibited an ability to overcome the drug resistance of tumor cells associated with the overexpression of the P-glycoprotein by modulating the work of this transporter. Luminex xMAP technology was used to assess the effect of five synthesized compounds …

4,6-O-Phenylethylidene Acetal Protected D-Glucosamine Carbamate-Based Gelators And Their Applications For Multi-Component Gels, Pooja Sharma, Guijun Wang

Chemistry & Biochemistry Faculty Publications

The self-assembly of carbohydrate-based low molecular weight gelators has led to useful advanced soft materials. The interactions of the gelators with various cations and anions are important in creating novel molecular architectures and expanding the scope of the small molecular gelators. In this study, a series of thirteen new C-2 carbamates of the 4,6-O-phenylethylidene acetalprotected D-glucosamine derivatives has been synthesized and characterized. These compounds are rationally designed from a common sugar template. All carbamates synthesized were found to be efficient gelators and three compounds are also hydrogelators. The resulting gels were characterized using optical microscopy, atomic force microscopy, …

Development Of Guidelines For Collecting Transit Ridership Data, Hong Yang, Kun Xie, Sherif Ishak, Qingyu Ma, Yang Liu

Computational Modeling & Simulation Engineering Faculty Publications

Transit ridership is a critical determinant for many transit applications such as operation optimizations and project prioritization under performance-based funding mechanisms. As a result, the quality of ridership data is of utmost importance to both transit administrative agencies and transit operators. Many transit operators in Virginia report their ridership data to the Department of Rail and Public Transportation (DRPT) and the National Transit Database (NTD). However, with no specific guidelines available to transit agencies in Virginia for collecting ridership data, the heterogeneous mixture of diverse data collection methods and technologies has often raised concerns about the consistency and quality of …

On The Use Of High-Frequency Surface Wave Oceanographic Research Radars As Bistatic Single-Frequency Oblique Ionospheric Sounders, Stephen R. Kaeppler, Ethan S. Miller, Daniel Cole, Teresa Updyke

CCPO Publications

We demonstrate that bistatic reception of high-frequency oceanographic radars can be used as single-frequency oblique ionospheric sounders. We develop methods that are agnostic of the software-defined radio system to estimate the group range from the bistatic observations. The group range observations are used to estimate the virtual height and equivalent vertical frequency at the midpoint of the oblique propagation path. Uncertainty estimates of the virtual height and equivalent vertical frequency are presented. We apply this analysis to observations collected from two experiments run at two locations in different years, but utilizing similar software-defined radio data collection systems. In the first …

Cyber Whistleblowers: The Black Sheep Of Whistleblowing?, Andrew Wisniewski Jr.

Cybersecurity Undergraduate Research Showcase

From the Introduction:

Contrary to popular belief, this paper argues that cyber whistleblowing can contribute to a greater cyber security posture. However, this requires the development of clearer legal obligations and protections for cyber whistleblowers. This paper will explore the psychology behind whistleblowing, the effectiveness of whistleblowing in a cybersecurity context, how to create a safer and more transparent environment for whistleblowers and companies, and how current laws contribute to cyber whistleblowing.

Did They Really Tweet That?, Caleb Bradford, Michael L. Nelson (Mentor)

Computer & Information Science: Research Experiences for Undergraduates in Disinformation Detection and Analytics

No abstract provided.

Ransombuster Iot: A Intrusion Detection And Dataset Creation Tool For Ransomware Attacks Within Iot Networks, Jackson M. Walker

Cybersecurity Undergraduate Research Showcase

The proposed research follows the design-science guidelines(Hevner, 2004). This paper uses these design-science methods for developing the guidelines for the implementation of the proposed architecture, understanding previous research contributions, and evaluating of research. This paper proposes a network artifact for studying ransomware IoT intrusion detection techniques and offers a proposed network architecture to serve as a framework for creating a publicly available dataset for IoT research on ransomware.

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Eric N. Powell, Sarah Borsetti, Eileen E. Hofmann, John M. Klinck

CCPO Publications

The Atlantic surfclam (Spisula solidissima) fishery generates approximately USD 30 million in landings revenues annually, distributed across ports throughout the US Mid-Atlantic and Northeast. Overlap between areas of Atlantic surfclam harvests and offshore wind energy leasing make the fishery vulnerable to exclusion and effort displacement as development expands in the region. An existing integrated bioeconomic agent-based model, including spatial dynamics in Atlantic surfclam stock biology, heterogeneous captain behaviour, and federal management processes, was extended to incorporate costs and revenues for fishing vessels and processors and used to evaluate the potential economic effects of offshore wind development on the …

Insurtech And Distribution, Michael Mcshane, C. Ariel Pinto, Hesamoddin Tahami, Hengameh Fakhravar

Developing Technology Foresight: Case Study of AI in InsurTech

Questions regarding InsurTech and distribution.

Disinformation About Mental Health On Tiktok, Dani Graber, Anne Perrotti (Mentor)

Computer & Information Science: Research Experiences for Undergraduates in Disinformation Detection and Analytics

No abstract provided.

Nonlinear Meissner Effect In Nb3Sn Coplanar Resonators, Junki Makita, C. Sundahl, Gianluigi Ciovati, C. B. Eom, Alex Gurevich

Physics Faculty Publications

We investigated the nonlinear Meissner effect (NLME) in Nb₃Sn thin-film coplanar resonators by measuring the resonance frequency as a function of a parallel magnetic field at different temperatures. We used low rf power probing in films thinner than the London penetration depth λ(B) to significantly increase the field onset of vortex penetration and measure the NLME under equilibrium conditions. Contrary to the conventional quadratic increase of λ(B) with B expected in s-wave superconductors, we observed a nearly linear increase of the penetration depth with B. We concluded that this behavior of λ(B) is due to weak linked grain …

Polarized Structure Function ΣLt' From 𝜋⁰P Electroproduction Data In The Resonance Region At 0.2 Gev² < Q² < 1.0 Gev², E. L. Isupov, V. D. Burkert, A. A. Golubenko, K. Joo, N. S. Markov, V. I. Mokeev, L. C. Smith, N. Zachariou, W. R. Armstrong, H. Atac, Et Al

Physics Faculty Publications

The first results on the σ_LT′ structure function in exclusive π⁰p electroproduction at invariant masses of the final state of 1.5GeV < W < 1.8 GeV and in the range of photon virtualities 0.4 GeV² < Q² < 1.0 GeV² were obtained from data on beam spin asymmetries and differential cross sections measured with the CLAS detector at Jefferson Lab. The Legendre moments determined from the σ_LT′ structure function have demonstrated sensitivity to the contributions from the nucleon resonances in the second and third resonance regions. These new data on the beam spin asymmetries in π⁰p electroproduction extend the opportunities for the extraction of the nucleon resonance electro-excitation amplitudes in …

Measurement Of Charged-Pion Production In Deep-Inelastic Scattering Off Nuclei With The Clas Detector, Clas Collaboration, S. Morán, R. Dupre, H. Hakobyan, Moskov J. Amaryan, Dilini Bulumulla, Mohammad Hattawy, Florian Hauenstein, Sebastian Kuhn, Pushpa Pandey, Jiwan Poudel, Yelena Prok, Lawrence B. Weinstein, N. Zachariou, J. Zhang, Z. W. Zhao, Et Al.

Physics Faculty Publications

Background: Energetic quarks in nuclear deep-inelastic scattering propagate through the nuclear medium. Processes that are believed to occur inside nuclei include quark energy loss through medium-stimulated gluon bremsstrahlung and intranuclear interactions of forming hadrons. More data are required to gain a more complete understanding of these effects.

Purpose: To test the theoretical models of parton transport and hadron formation, we compared their predictions for the nuclear and kinematic dependence of pion production in nuclei.

Methods: We have measured charged-pion production in semi-inclusive deep-inelastic scattering off D, C, Fe, and Pb using the CLAS detector and the CEBAF 5.014-GeV electron beam. …

Form Factors And Two-Photon Exchange In High-Energy Elastic Electron-Proton Scattering, M. E. Christy, T. Gautam, L. Ou, S.L. Allison, D. Bulumulla, F. Hauenstein, C. Hyde, K. Park, M.N.H. Rashad, J. Zhang, Y. X. Zhao, P. Zhu, Et Al.

Physics Faculty Publications

We present new precision measurements of the elastic electron-proton scattering cross section for momentum transfer (Q²) up to 15.75  (GeV/c)². Combined with existing data, these provide an improved extraction of the proton magnetic form factor at high Q² and double the range over which a longitudinal or transverse separation of the cross section can be performed. The difference between our results and polarization data agrees with that observed at lower Q² and attributed to hard two-photon exchange (TPE) effects, extending to 8 (GeV/c)² the range of Q² for which a discrepancy …

Positivity And Renormalization Of Parton Densities, John Collins, Ted C. Rogers, Nobuo Sato

Physics Faculty Publications

There have been recent debates about whether MS parton densities exactly obey positivity bounds (including the Soffer bound) and whether the bounds should be applied as a constraint on global fits to parton densities and on nonperturbative calculations. A recent paper [Candido et al., Can MS parton distributions be negative?, J. High Energy Phys. 11 (2020) 129] appears to provide a proof of positivity in contradiction with earlier work by other authors. We examine their derivation and find that its primary failure is in the apparently uncontroversial statement that bare parton density (or distribution) function (pdfs) are always …

Emittance In Nonlinear Thomson Scattering, Erik Johnson, Elizabeth Breen, Geoffrey A. Krafft, Balša Terzić

Physics Faculty Publications

Inverse Compton scattering sources are finding increasing use as intense sources of high-energy photons. When operated at high field strength, ponderomotive detuning of the scattered emission can lead to decreased source performance. Up to now, the calculations of spectra for such nonlinear Thomson scattering have been done assuming a perfectly aligned electron interacts with the incident laser beam and several authors have investigated whether pondermotive detuning may be mitigated or cured by suitable incident laser chirping prescriptions. In order to determine if these chirping prescriptions are suitable in real beams with nonzero emittance, it is necessary to include misaligned boundary …

Cebaf Injector Model For KL Beam Conditions, Sunil Pokharel, Geoffrey A. Krafft, A. S. Hofler, R. Kazimi, M. Bruker, J. Grames, S. Zhang

Physics Faculty Publications

The Jefferson Lab KL experiment will run at the Continuous Electron Beam Accelerator Facility with a much lower bunch repetition rate (7.80 or 15.59 MHz) than nominally used (249.5 or 499 MHz). While the proposed average current of 2.5 - 5.0 µA is relatively low compared to the maximum CEBAF current of approximately 180 µA, the corresponding bunch charge is atypically high for CEBAF injector operation. In this work, we investigated the evolution and transmission of low-rep-rate, high-bunch-charge (0.32 to 0.64 pC) beams through the CEBAF injector. Using the commercial software General Particle Tracer, we have simulated and analyzed the …

Modeling A Nb3Sn Cryounit In Gpt In Uitf, Sunil Pokharel, Geoffey A. Krafft, A. S. Hofler

Physics Faculty Publications

Nb₃Sn is a prospective material for future superconducting RF (SRF) accelerator cavities. The material can achieve higher quality factors, higher temperature operation and potentially higher accelerating gradients (E_{acc} 96 MV/m) compared to conventional niobium. In this work, we performed modeling of the Upgraded Injector Test Facility (UITF) at Jefferson Lab utilizing newly constructed Nb₃Sn cavities. We studied the effects of the buncher cavity and varied the gun voltages from 200-500 keV. We have calibrated and optimized the SRF cavity gradients and phases for the Nb₃Sn five-cell cavities energy gains with the framework of General Particle Tracer (GPT). Our calculations show …

Magnetic Field Penetration Technique To Study Field Shielding Of Multilayered Superconductors, Iresha Harshani Senevirathne, Alex Gurevich, Jean R. Delayen, A-M Valente-Feliciano

Physics Faculty Publications

The SIS structure which consists of alternative thin layers of superconductors and insulators on a bulk niobium has been proposed to shield niobium cavity surface from high magnetic field and hence increase the accelerating gradient. The study of the behavior of multilayer superconductors in an external magnetic field is essential to optimize their SRF performance. In this work we report the development of a simple and efficient technique to measure penetration of magnetic field into bulk, thin film and multilayer superconductors. Experimental setup contains a small superconducting solenoid which can produce a parallel surface magnetic field up to 0.5 T …

Magnetic Field Mapping Of 1.3 Ghz Superconducting Radio Frequency Niobium Cavities, Ishwari P. Parajuli, Gianluigi Ciovati, Jean R. Delayen, Alex V. Gurevich

Physics Faculty Publications

Niobium is the material of choice to build superconducting radio frequency (SRF) cavities, which are fundamental building blocks of modern particle accelerators. These cavities require a cryogenic cool-down to ~2 - 4 K for optimum performance minimizing RF losses on the inner cavity surface. However, temperature-independent residual losses in SRF cavities cannot be prevented entirely. One of the significant contributor to residual losses is trapped magnetic flux. The flux trapping mechanism depends on different factors, such as surface preparations and cool-down conditions. We have developed a diagnostic magnetic field scanning system (MFSS) using Hall probes and anisotropic magneto-resistance sensors to …