Physical Sciences and Mathematics Commons^™

Editorial: Innovating A New Knowledge Base For Water Justice Studies: Hydrosocial, Sociohydrology, And Beyond, Melissa Haeffner, Jenia Mukherjee, Rebecca Lave, Jamie Linton, John Ndiritu, Raul Pacheco-Vega, Maria Ruska, Margreet Zwarteveen

Environmental Science and Management Faculty Publications and Presentations

Creating a new knowledge base that centers water justice (Zwarteveen and Boelens, 2014; Sultana, 2018; Wölfle-Hazard, 2022) in hydrosocial and sociohydrology studies involves a broader discussion about why justice matters, how to work toward this goal, and what the implications for research praxis are. The articles in this Research Topic approach different angles of water justice: as law (Fernández and Alba), a social movement (Dame et al.), practice (Pool et al.; Reeves and Bonney), cases of injustice (Caretta et al.), and theory (Krueger and Alba). From this Research Topic, we find that the interrelated concepts of naturecultures and care can …

Reconnecting A Stream Channel To Its Floodplain: Implications For Benthic Diatoms And Macroinvertebrate Trophic Structure, Patrick M. Edwards, Nicole C. Popp, Yangdong Pan, Christine L. Weilhoefer, Aspen Peterman, Lauren Mork, Matthew F. Johnson, Megan Colley, Multiple Additional Authors

Environmental Science and Management Faculty Publications and Presentations

Streams systems draining upland landscapes provide valuable ecosystem services, but they are vulnerable to incision and channelization caused by anthropogenic disturbance. Restoring a degraded stream to its pre-disturbance condition by reconnecting the channel to its historical floodplain aims to recover lost hydro-morphological processes and functions. Seeking evidence to indicate whether that aim is met in practice, we examined diatoms and the stream macroinvertebrate trophic structures in three reaches of Whychus Creek, Oregon, United States. Two reaches were reconnected to their pre-disturbance floodplains in 2012 and 2016. The third, control reach, was not restored and was selected to represent the degraded …

Where The Rubber Meets The Road: Emerging Environmental Impacts Of Tire Wear Particles And Their Chemical Cocktails, Paul M. Mayer, Kelly D. Moran, Susanne Brander, Stacey L. Harper, Manuel Garcia-Jaramillo, Elise F. Granek, Multiple Additional Authors

Environmental Science and Management Faculty Publications and Presentations

About 3 billion new tires are produced each year and about 800 million tires become waste annually. Global dependence upon tires produced from natural rubber and petroleum-based compounds represents a persistent and complex environmental problem with only partial and often-times, ineffective solutions. Tire emissions may be in the form of whole tires, tire particles, and chemical compounds, each of which is transported through various atmospheric, terrestrial, and aquatic routes in the natural and built environments. Production and use of tires generates multiple heavy metals, plastics, PAH's, and other compounds that can be toxic alone or as chemical cocktails. Used tires …

Using Flipped Classroom Modules To Facilitate Higher Order Learning In Undergraduate Organic Chemistry, Lauren R. Holloway, Tabitha Miller, Bryce Da Camara, Paul M. Bogie, Briana L. Hickey, Jack Barbera, Angie L. Lopez, Multiple Additional Authors

Chemistry Faculty Publications and Presentations

In an ongoing effort to incorporate active learning and promote higher order learning outcomes in undergraduate organic chemistry, a hybrid (“flipped”) classroom structure has been used to facilitate a series of collaborative activities in the first two courses of the lower division organic chemistry sequence. An observational study of seven classes over a five-year period reveals there is a strong correlation between performance on the in-class activities and performance on the final exam across all classes; however, a significant number of students in these courses continue to struggle on both the in-class activities and final exam. The Activity Engagement Survey …

The Α-Crystallin Chaperones Undergo A Quasi-Ordered Co-Aggregation Process In Response To Saturating Client Interaction, Kirsten Lampi, Adam P. Miller, Susan E. O'Neill, Steve L. Reichow

Chemistry Faculty Publications and Presentations

Small heat shock proteins (sHSPs) are ATP-independent chaperones vital to cellular proteostasis, preventing protein aggregation events linked to various human diseases including cataract. The α-crystallins, αA-crystallin (αAc) and αB-crystallin (αBc), represent archetypal sHSPs that exhibit complex polydispersed oligomeric assemblies and rapid subunit exchange dynamics. Yet, our understanding of how this plasticity contributes to chaperone function remains poorly understood. This study investigates structural changes in αAc and αBc during client sequestration under varying degree of chaperone saturation. Using biochemical and biophysical analyses combined with single-particle electron microscopy (EM), we examined αAc and αBc in their apo-states and at various stages of …

Dna-Based Assay For Calorimetric Determination Of Protein Concentrations In Pure Or Mixed Solutions, Matthew W. Eskew, Patrick Reardon, Albert S. Benight

Chemistry Faculty Publications and Presentations

It was recently reported that values of the transition heat capacities, as measured by differential scanning calorimetry, for two globular proteins and a short DNA hairpin in NaCl buffer are essentially equivalent, at equal concentrations (mg/mL). To validate the broad applicability of this phenomenon, additional evidence for this equivalence is presented that reveals it does not depend on DNA sequence, buffer salt, or transition temperature (Tm). Based on the equivalence of transition heat capacities, a calorimetric method was devised to determine protein concentrations in pure and complex solutions. The scheme uses direct comparisons between the thermodynamic stability of a short …

Rising Water Temperature In Rivers: Ecological Impacts And Future Resilience, Matthew F. Johnson, Lindsey K. Albertson, Adam C. Algar, Stephen J. Dugdale, Patrick Edwards, Judy England, Christopher Gibbins, Multiple Additional Authors

Environmental Science and Management Faculty Publications and Presentations

Rising water temperatures in rivers due to climate change are already having observable impacts on river ecosystems. Warming water has both direct and indirect impacts on aquatic life, and further aggravates pervasive issues such as eutrophication, pollution, and the spread of disease. Animals can survive higher temperatures through physiological and/or genetic acclimation, behavioral and phenological change, and range shifts to more suitable locations. As such, those animals that are adapted to cool-water regions typically found in high altitudes and latitudes where there are fewer dispersal opportunities are most at risk of future extinction. However, sub-lethal impacts on animal physiology and …

Supply Is Not Limulus: Research Review Of Horseshoe Crab Conservation In The Face Of Intense Pharmaceutical Demand, Zoya Galeev

University Honors Theses

Horseshoe crabs are being used by the pharmaceutical industry to conduct endotoxin tests using LAL derived from the organism’s blood to ensure safe medical practice. Their annual collection and bleeding, while not always leading to mortality, affects horseshoe crab behavior and health. This research seeks to understand how the American horseshoe crab, L. polyphemus, is being used by pharmaceutical agencies and the implications that their harvesting has on the industry and the conservation of the species. Studies were collected from the past decade across two databases, Web of Science (WOS) and PubMed, to assess present conservation techniques to reduce …

Mask2former With Improved Query For Semantic Segmentation In Remote-Sensing Images, Shichen Guo, Qi Wang, Shiming Xiang, Shuwen Wang, Xuezhi Wang

Computer Science Faculty Publications and Presentations

Semantic segmentation of remote sensing (RS) images is vital in various practical applications, including urban construction planning, natural disaster monitoring, and land resources investigation. However, RS images are captured by airplanes or satellites at high altitudes and long distances, resulting in ground objects of the same category being scattered in various corners of the image. Moreover, objects of different sizes appear simultaneously in RS images. For example, some objects occupy a large area in urban scenes, while others only have small regions. Technically, the above two universal situations pose significant challenges to the segmentation with a high quality for RS …

Mmwave Rat Optimization: Mac Layer Initial Access Design And Transport Layer Integration, Suresh Srinivasan

Dissertations and Theses

MmWave Radio Access Technology (RAT) is a promising technology for wireless communication due its large bandwidth and is already being deployed in 5G cellular and emerging WiFi technologies. MmWave systems use highly directional beams with narrow beamwidths to overcome the high path loss associated with their frequency bands. A mmWave radio can be used either in a standalone mode (where all radios use the same technology) or simultaneously with other technologies such as LTE and low frequency WiFi in a communication mode commonly referred to as integrated mode. This thesis proposes two methods to optimize mmWave RAT performance in both …

Deep Structure Of Siletzia In The Puget Lowland: Imaging An Obducted Plateau And Accretionary Thrust Belt With Potential Fields, Megan L. Anderson, Richard J. Blakely, Ray E. Wells, Joe D. Dragovich

Geology Faculty Publications and Presentations

Detailed understanding of crustal components and tectonic history of forearcs is important due to their geological complexity and high seismic hazard. The principal component of the Cascadia forearc is Siletzia, a composite basaltic terrane of oceanic origin. Much is known about the lithology and age of the province. However, glacial sediments blanketing the Puget Lowland obscure its lateral extent and internal structure, hindering our ability to fully understand its tectonic history and its influence on modern deformation. In this study, we apply map-view interpretation and two-dimensional modeling of aeromagnetic and gravity data to the magnetically stratified Siletzia terrane revealing its …

Brief Communication: Recent Estimates Of Glacier Mass Loss For Western North America From Laser Altimetry, Brian Menounos, Caitlyn Forentine, Alex A. Gardner, Andrew G. Fountain

Geology Faculty Publications and Presentations

Glaciers in western North American outside of Alaska are often overlooked in global studies because their potential to contribute to changes in sea level is small. Nonetheless, these glaciers represent important sources of freshwater, especially during times of drought. Differencing recent ICESat-2 data from a digital elevation model derived from a combination of synthetic aperture radar data (TerraSAR-X/TanDEM-X), we find that over the period 2013–2020, glaciers in western North America lost mass at a rate of 12:3+3:5 Gt yr^-1. This rate is comparable to the rate of mass loss (11:71:0 Gt yr1) for the period 2018– 2022 calculated …

Integral Representations Over Finite Limits For Quantum Amplitudes, Jack C. Straton

Physics Faculty Publications and Presentations

We extend previous research to derive three additional M-1-dimensional integral representations over the interval [0,1]" The prior version covered the interval [0,∞]" role="presentation position: relative;">[0,∞][0,∞]. This extension applies to products of M Slater orbitals, since they (and wave functions derived from them) appear in quantum transition amplitudes. It enables the magnitudes of coordinate vector differences (square roots of polynomials) |x1−x2|=x12−2x1x2cosθ+_x22" to be shifted from disjoint products of functions into a single quadratic form, allowing for the completion of its square. The M-1-dimensional integral representations of M Slater orbitals that both this extension and the prior version introduce …

The Fourier–Legendre Series Of Bessel Functions Of The First Kind And The Summed Series Involving 1F2 Hypergeometric Functions That Arise From Them, Jack C. Straton

Physics Faculty Publications and Presentations

The Bessel function of the first kind JN^(kx) is expanded in a Fourier–Legendre series, as is the modified Bessel function of the first kind IN^(kx). The purpose of these expansions in Legendre polynomials was not an attempt to rival established numerical methods for calculating Bessel functions but to provide a form for JN^(kx) useful for analytical work in the area of strong laser fields, where analytical integration over scattering angles is essential. Despite their primary purpose, one can easily truncate the series at 21 terms to provide 33-digit accuracy that matches the IEEE extended precision in …

Watershed, Lake, And Food Web Factors Influence Diazotrophic Cyanobacteria In Mountain Lakes, Lara Jansen, Daniel Sobota, Yangdong Pan, Angela Strecker

Environmental Science and Management Faculty Publications and Presentations

Cyanobacterial blooms can occur in freshwater ecosystems largely isolated from development and not experiencing extensive cultural eutrophication. For example, remote mountain lakes can experience intense blooms of diazotrophic (nitrogen-fixing) cyanobacteria caused by factors acting at different spatial and temporal scales. In this study, we examined how cross-scale interactions among watershed, lake, and food web characteristics influence diazotrophic cyanobacteria biovolume in mountain lakes. We quantified diazotrophic cyanobacteria biovolume, zooplankton abundance, and physico-chemical variables for 29 lakes in the Cascade Mountains of Oregon, USA, in summer 2019. Watershed characteristics were compiled from historical datasets available for the region. Diazotrophic cyanobacteria biovolume ranged …

Improved Subseasonal Prediction Of South Asian Monsoon Rainfall Using Data-Driven Forecasts Of Oscillatory Modes, Eviatar Bach, Venkat Krishnamurthy, Safa Mote, Jagadish Shukla, A. Surjalal Sharma, Eugenia Kalnay, Michael Ghil

Mathematics and Statistics Faculty Publications and Presentations

Predicting the temporal and spatial patterns of South Asian monsoon rainfall within a season is of critical importance due to its impact on agriculture, water availability, and flooding. The monsoon intraseasonal oscillation (MISO) is a robust northwardpropagating mode that determines the active and break phases of the monsoon and much of the regional distribution of rainfall. However, dynamical atmospheric forecast models predict this mode poorly. Data-driven methods for MISO prediction have shown more skill, but only predict the portion of the rainfall corresponding to MISO rather than the full rainfall signal. Here, we combine state-of-the-art ensemble precipitation forecasts from a …

Self-Optimizing Feature Generation Via Categorical Hashing Representation And Hierarchical Reinforcement Crossing, Wangyang Ying, Dongjie Wang, Kunpeng Liu, Leilei Sun, Yanjie Fu

Computer Science Faculty Publications and Presentations

Feature generation aims to generate new and meaningful features to create a discriminative representation space. A generated feature is meaningful when the generated feature is from a feature pair with inherent feature interaction. In the real world, experienced data scientists can identify potentially useful feature-feature interactions, and generate meaningful dimensions from an exponentially large search space in an optimal crossing form over an optimal generation path. But, machines have limited human-like abilities. We generalize such learning tasks as self-optimizing feature generation. Self-optimizing feature generation imposes several under-addressed challenges on existing systems: meaningful, robust, and efficient generation. To tackle these challenges, …

Proof Of The Kresch-Tamvakis Conjecture, John Caughman, Taiyo S. Terada

Mathematics and Statistics Faculty Publications and Presentations

In this paper we resolve a conjecture of Kresch and Tamvakis.

The Use Of Fluorescence Lifetime Imaging (Flim) For In Situ Microbial Detection In Complex Mineral Substrates, Yekaterina G. Chmykh, Jay Nadeau

Physics Faculty Publications and Presentations

The utility of fluorescence lifetime imaging microscopy (FLIM) for identifying bacteria in complex mineral matrices was investigated. Baseline signals from unlabelled Bacillus subtilis and Euglena gracilis, and Bacillus subtilis labelled with SYTO 9 were obtained using two-photon excitation at 730, 750 and 800 nm, identifying characteristic lifetimes of photosynthetic pigments, unpigmented cellular autofluorescence, and SYTO 9. Labelled and unlabelled B. subtilis were seeded onto marble and gypsum samples containing endolithic photosynthetic cyanobacteria and the ability to distinguish cells from mineral autofluorescence and nonspecific dye staining was examined in parallel with ordinary multichannel confocal imaging. It was found that FLIM …

Electromagnetic Fields And Radiation From Localized Current Source Interacting With A Cosmic Axion Field In The Context Of Massive Axion Electrodynamics, Railing Chang, P. T. Leung

Physics Faculty Publications and Presentations

Electromagnetic fields from localized current source interacting with an oscillatory cosmic axion field are studied, accounting for the possibility of a finite photon mass. In particular, focus will be on the dipole radiation from static current sources. The Proca theory is generalized to include the axion field and solutions to the modified EM field equations are obtained to first order in the axion coupling parameter. Analysis of the interplay between the two vanishingly small parameters – the axion mass (via the coupling constant and the oscillating frequency) and the photon mass – is carried out with reference to possible future …

Accretion Of Warm Chondrules In Weakly Metamorphosed Ordinary Chondrites And Their Subsequent Reprocessing, Alexander M. Ruzicka, Richard C. Hugo, Jon M. Friedrich, Michael Tyler Ream

Geology Faculty Datasets

To better understand chondrite accretion and subsequent processes, the textures, crystallography, deformation, and compositions of some chondrite constituents in ten lithologies of different cluster texture strength were studied in seven weakly metamorphosed (Type 3) and variably shocked ordinary chondrites (Ragland—LL3 S1, Tieschitz—H/L3 S1, NWA 5421—LL3 S2, NWA 5205—LL3 S2, NWA 11905—LL3-5 S3, NWA 5781—LL3 S3, NWA 11351—LL3-6 S4) using optical and electron microscopy and microtomography techniques. Results support a four-stage model for chondrite formation. This includes 1) limited annealing following collisions during chondrule crystallization and rapid cooling in space prior to accretion, as evidenced by olivine microstructures consistent with dislocation …

Deep Adaptive Graph Clustering Via Von Mises-Fisher Distributions, Pengfei Wang, Daqing Wu, Chong Chen, Kunpeng Liu, Yanjie Fu, Jianqiang Huang, Yuanchun Zhou, Jianfeng Zhan, Xiansheng Hua

Computer Science Faculty Publications and Presentations

Graph clustering has been a hot research topic and is widely used in many fields, such as community detection in social networks. Lots of works combining auto-encoder and graph neural networks have been applied to clustering tasks by utilizing node attributes and graph structure. These works usually assumed the inherent parameters (i.e., size and variance) of different clusters in the latent embedding space are homogeneous, and hence the assigned probability is monotonous over the Euclidean distance between node embeddings and centroids. Unfortunately, this assumption usually does not hold since the size and concentration of different clusters can be quite different, …

Assessment Of Avian Community Structure And Habitat Connectivity In The Fanno Creek Corridor Bird Surveys, Habitat Assessment, And Management Recommendations, Grace Hall

Environmental Science and Management Professional Master's Project Reports

Urbanization can significantly impact habitat quality and connectivity for avian communities, decreasing species richness and diversity. However, in highly fragmented habitats, urban parks and riparian zones can provide important habitat corridors for birds that facilitate movement and access to essential resources. On the west side of greater Portland, Oregon, Fanno Creek may serve as a habitat corridor for birds and other local wildlife.

Fanno Creek is a 25-kilometer tributary of the Tualatin River that runs through the cities of Portland, Beaverton, Tigard, and Durham in northwestern Oregon. The land surrounding the creek includes residential, commercial, and industrial properties as well …

The Magmatic Origin Of The Columbia River Gorge, Usa, Nathaniel Klema, Leif Karlstrom, Charles Cannon, Chengxin Jiang, Jim O'Connor, Ray E. Wells, Brandon Schmandt

Geology Faculty Publications and Presentations

Along subduction zones, high-relief topography is associated with sustained volcanism parallel to the plate margin. However, the relationship between magmatism and mountain building in arcs is poorly understood. Here, we study patterns of surface deformation and correlated fluvial knickpoints in the Columbia River Gorge to link long-term magmatism to the uplift and ensuing topographic development of the Cascade Range. An upwarped paleochannel exposed in the walls of the Gorge constrains unsteady deep magma flux, the ratio of intrusive to extrusive magmatic contributions to topography, and the impact of magmatism on Columbia River incision since 3.5 million years ago. Geophysical data …

How Are Oregon's Rural Indigenous Communities Overcoming Water Access Issues?, Tyren John Thompson

Dissertations and Theses

This study investigates how water insecurity affects Indigenous communities in Grand Ronde, Warm Springs, and Umatilla, Oregon, through loss of clean drinking water, access to culturally significant foods, and exposure to pollution. Each community offers innovative solutions drawing on their Indigenous knowledge to overcome water supply challenges. Communities with more resources are better equipped to cope with water insecurity and environmental degradation.

Tiny Drifters Amidst Global Change: Examining Environmental Drivers, Trophic Impacts, And Management Strategies Of Estuarine Plankton Communities In The Anthropocene, Taylor Nicole Dodrill

Dissertations and Theses

Plankton productivity supports estuarine food webs, and has been tied to the success of fisheries, macroinvertebrates, and cultured shellfish yields. Climate change and alterations to nutrient loads are thought to be influencing plankton assemblages, with toxin-producing harmful algal blooms (HABs) on the rise and nutritional quality of plankton declining globally. These shifts in plankton communities may contribute to low biomass yields and toxin-based closures of important fisheries. The objectives of this dissertation are to identify environmental drivers, trophic impacts, and management strategies to understand and respond to changing estuarine plankton communities. To address these objectives, I used a combination of …

Province-Wide Tapping Of A Shallow, Variably Depleted, And Metasomatized Mantle To Generate Earliest Flood Basalt Magmas Of The Columbia River Basalt, Northwestern Usa, Martin J. Streck, Luke James Fredenberg, Lena M. Fox, Emily B. Cahoon, Mary J. Mass

Geology Faculty Publications and Presentations

The Miocene Columbia River Basalt Group (CRBG) of the Pacific Northwest of the United States is the world’s youngest and smallest large igneous province. Its earliest formations are the Imnaha, Steens, and now the Picture Gorge Basalt (PGB), and they were sourced from three different dike swarms exposed from SE Washington to Nevada to northcentral Oregon. PGB is often viewed to be distinct from the other formations, as its magmas are sourced from a shallow, relatively depleted, and later subduction-induced metasomatized mantle, along with its young stratigraphic position. It has long been known that the lowermost American Bar flows (AB1&2) …

Coastal Wetland Restoration Through The Lens Of Odum's Theory Of Ecosystem Development, Friedrich W. Keppeler, Annette S. Engel, Linda M. Hooper-Bùi, Paola C. López-Duarte, Charles W. Martin, Jill A. Olin, Katelyn J. Lamb, Michael J. Polito, Nancy N. Rabalais, Multiple Additional Authors

Environmental Science and Management Faculty Publications and Presentations

Advancing ecological restoration assessments requires a more detailed consideration of species interactions and ecosystem processes. Most restoration projects rely on a few metrics not always directly linked with ecological theory. Here, we used Odum's theory of ecosystem development to assess and compare the ecosystem structure and services of created marshes (4–6 years old) with preexisting, reference marshes in a brackish water region of the Mississippi River Delta. We built ecosystem models for created and reference marshes that integrated large datasets of stomach contents, stable isotopes, and taxa abundances. Despite strong resemblance in community structure, created marshes were at an earlier …

An Efficient And Chemoselective Method To Generate Arynes, Bryan Metze, Riley A. Roberts, Aleksandra Nilova, David R. Stuart

Chemistry Faculty Publications and Presentations

Arynes hold immense potential as reactive intermediates in organic synthesis as they engage in a diverse range of mechanistically distinct chemical reactions. However, the poor functional group compatibility of generating arynes or their precursors has stymied their widespread use. Here, we show that generating arynes by deprotonation of an arene and elimination of an “onium” leaving group is mild, efficient and broad in scope. This is achieved by using aryl(TMP)iodonium salts (TMP = 2,4,6-trimethoxyphenyl) as the aryne precursor and potassium phosphate as the base, and a range of arynophiles are compatible. Additionally, we have performed the first quantitative analysis of …

The Discovery Of Diverse Picophytoplankton Populations In The Columbia And Willamette Rivers Using Flow Cytometry, Kylee M. Lamberson

Chemistry Undergraduate Departmental Honors Theses

As important primary producers, picophytoplankton determine the flow of carbon and energy in aquatic ecosystems. Picocyanobacteria are one picophytoplankton group known to be dominant in oceans and lakes, but they are still poorly understood in river systems. This project examined picophytoplankton communities in two distinct river systems: the Columbia and Willamette Rivers in Portland, Oregon. I aimed to characterize and quantify the picophytoplankton populations in the context of the environmental conditions of the two rivers. I used flow cytometry to detect cells based on their relative size and pigment fluorescence. I sampled nearly weekly for ten months to capture population …