Physical Sciences and Mathematics Commons^™

Effects Of Spatially Distributed Stream Power On Check Dam Function In Small Upland Watersheds: A Case Study Of The Upper Laja Watershed, Guanajuato, Mexico, Zachary Andrew Herzfeld

Dissertations and Theses

Watershed restoration comes in a variety of forms depending on which set of problems are sought to be remedied. Severe soil erosion, in the form of gullying and/or headcutting, can be mitigated through constructing check dams in well-selected locations. This practice has been used throughout the upland subwatersheds within the Upper Laja River watershed in Guanajuato, México. The present study employed Wolman pebble counts to systematically assess the effectiveness of 21 check dams located near the city of San Miguel de Allende. Particle size distributions taken directly downstream and upstream of each check dam were differentiated, aggregated and compared--with the …

General Approach To Quantum Channel Impossibility By Local Operations And Classical Communication, Scott M. Cohen

Physics Faculty Publications and Presentations

We describe a general approach to proving the impossibility of implementing a quantum channel by local operations and classical communication (LOCC), even with an infinite number of rounds, and find that this can often be demonstrated by solving a set of linear equations. The method also allows one to design a LOCC protocol to implement the channel whenever such a protocol exists in any finite number of rounds. Perhaps surprisingly, the computational expense for analyzing LOCC channels is not much greater than that for LOCC measurements. We apply the method to several examples, two of which provide numerical evidence that …

Factors Affecting Snowy Plover Chick Survival In A Managed Population, Stephen J. Dinsmore, Eleanor P. Gaines, Scott F. Pearson, David J. Lauten, Kathleen J. Castelein

Institute for Natural Resources Publications

Understanding survival of precocial chicks in the period immediately following hatching has important conservation implications because population growth is often sensitive to post-hatching survival. We studied federally threatened Western Snowy Plover (Charadrius nivosus nivosus) broods at the northern limit of their range in coastal Oregon (n ¼ 1,157) and Washington (n ¼ 84) from 1991 to 2011 in an attempt to understand seasonal, annual, and spatial patterns of chick survival. In Oregon, plover chick survival increased with age, varied between sites, and was greater at sites with predator management. The mean probability of surviving from hatch to fledging at 28 …

High-Quality Chemical Vapor Deposition Graphene-Based Spin Transport Channels, Lester Florian Lampert

Dissertations and Theses

Spintronics reaches beyond typical charge-based information storage technologies by utilizing an addressable degree of freedom for electron manipulation, the electron spin polarization. With mounting experimental data and improved theoretical understanding of spin manipulation, spintronics has become a potential alternative to charge-based technologies. However, for a long time, spintronics was not thought to be feasible without the ability to electrostatically control spin conductance at room temperature. Only recently, graphene, a 2D honeycomb crystalline allotrope of carbon only one atom thick, was identified because of its predicted, long spin coherence length and experimentally realized electrostatic gate tunability. However, there exist several challenges …

Evaluating Simplistic Methods To Understand Current Distributions And Forecast Distribution Changes Under Climate Change Scenarios: An Example With Coypu (Myocastor Coypus), Catherine S. Jarnevich, Nicholas E. Young, Trevor R. Sheffels, Jacoby Carter, Mark D. Sytsma, Colin Talbert

Environmental Science and Management Faculty Publications and Presentations

Invasive species provide a unique opportunity to evaluate factors controlling biogeographic distributions; we can consider introduction success as an experiment testing suitability of environmental conditions. Predicting potential distributions of spreading species is not easy, and forecasting potential distributions with changing climate is even more difficult. Using the globally invasive coypu (Myocastor coypus [Molina, 1782]), we evaluate and compare the utility of a simplistic ecophysiological based model and a correlative model to predict current and future distribution. The ecophysiological model was based on winter temperature relationships with nutria survival. We developed correlative statistical models using the Software for Assisted Habitat Modeling …

Psu Green Building Summer Internship Final Presentation, 2017, Campus Sustainability Office

Campus Sustainability Office Publications, Reports and Presentations

RESEARCH QUESTION: Is duct cleaning beneficial in terms of energy efficiency and overall occupant comfort?

Campus Sustainability Office Annual Report, 2016-2017, Campus Sustainability Office

Campus Sustainability Office Publications, Reports and Presentations

The Campus Sustainability Office 2016-2017 annual report.

Analysis Of Impacts To Ecosystem Services Of Tree Replacement - Recommendations For Broadway Arboretum Phase One, Kim Brown, Joaquin Moore, Jeffrey J. Gerwing

Campus Sustainability Office Publications, Reports and Presentations

The Broadway Arboretum Project is a coordinated effort between the Campus Planning Office (CPO), Campus Sustainability Office (CSO), and the Facilities and Property Management team (FPM) that seeks to increase diversity and resilience of PSU’s urban forest by replacing the existing trees lining Broadway Ave. between I-405 and SW Market Street (currently consisting of almost entirely a single variety, Norway Maple) with a variety of trees that showcase those currently approved by the City for street tree planting while also providing a testing ground for additional varieties that might by resilient to the challenges of growing and surviving in Portland’s …

Trace Metals In Stormwater: Alternative Best Management Practices, Jennifer Ibeth Mora

Civil and Environmental Engineering Master's Project Reports

Heavy metals, such as copper (Cu) and zinc (Zn), are considered hazardous in natural waters due to their toxicity and non-biodegradability. The focus of this study is to use batch experiments to investigate the heavy metal (Cu and Zn) removal efficiency of perlite and Earthlite^TM to improve in-situ filtration systems for stormwater catchment basins. Stormwater samples from two field sites in Portland, OR, chosen to represent a high-use commercial site and high-traffic urban road, were characterized to inform experimental design and compare to values found in literature. The Linear, Freundlich, and Langmuir isotherm models were used to describe equilibrium …

Identifying Clouds With Convolutional Neural Networks, Jeff Mullins, Sean Richardson, Peter Drake

Portland Institute for Computational Science Publications

The greatest source of uncertainty in model estimates of projected climate change involve clouds and aerosols. Photographic images of clouds in the sky are simple to acquire and archive, but climate scientists need an automated process for identifying clouds in these images. We bring machine learning to bear on this problem. Specifically, we use convolutional neural networks, which to our knowledge have not previously been applied to this task. We trained a network to identify clear sky, thin cloud, thick cloud, and non-sky pixels in photos taken by the Total Sky Imager. The trained network is capable of classifying 91.9% …

City Of Gresham Stormwater Retrofit Master Plan, Teresa F. Huntsinger

Civil and Environmental Engineering Master's Project Reports

The Stormwater Retrofit Master Plan identifies more than 50 stormwater retrofit project opportunities across three watersheds in the City of Gresham. The retrofit projects are prioritized in a scoring system to evaluate the costs and benefits of diverse project sizes and types. Project types range from bioswales and planters in city parking lots and along arterial roads, to regional end-of-pipe facilities and retrofits of existing detention ponds. Top projects will move forward for further assessment, design and construction, helping the city achieve its water quality improvement goals. The scoring system may be used to evaluate additional projects in the future.

Mapping The Nonstationary Internal Tide With Satellite Altimetry, Edward Zaron

Civil and Environmental Engineering Faculty Publications and Presentations

t Temporal variability of the internal tide has been inferred from the 23 year long combined records of the TOPEX/Poseidon, Jason-1, and Jason-2 satellite altimeters by combining harmonic analysis with an analysis of along-track wavenumber spectra of sea-surface height (SSH). Conventional harmonic analysis is first applied to estimate and remove the stationary components of the tide at each point along the reference ground tracks. The wavenumber spectrum of the residual SSH is then computed, and the variance in a neighborhood around the wavenumber of the mode-1 baroclinic M2 tide is interpreted as the sum of noise, broadband nontidal processes, and …

Sea-Level Rise Induced Amplification Of Coastal Protection Design Heights, Arne Arns, Soenke Dangendorf, Juergen Jensen, Stefan Talke, Jens Bender, Charitha Pattiaratchi

Civil and Environmental Engineering Faculty Publications and Presentations

Coastal protection design heights typically consider the superimposed effects of tides, surges, waves, and relative sea-level rise (SLR), neglecting non-linear feedbacks between these forcing factors. Here, we use hydrodynamic modelling and multivariate statistics to show that shallow coastal areas are extremely sensitive to changing non-linear interactions between individual components caused by SLR. As sea-level increases, the depth-limitation of waves relaxes, resulting in waves with larger periods, greater amplitudes, and higher run-up; moreover, depth and frictional changes affect tide, surge, and wave characteristics, altering the relative importance of other risk factors. Consequently, sea-level driven changes in wave characteristics, and to a …

Informing Oregon's Marine Protected Area (Mpa) Baseline Past And Present Tribal Uses Of Marine Resources, Sabra Marie Tallchief Comet

Environmental Science and Management Professional Master's Project Reports

Oregon implemented a series of marine reserves from 2012 through the beginning of 2016 that will be evaluated in 2023. As part of that evaluation, several studies are focusing on the impact of the reserves on coastal communities. This project focused on tribal members with ancestral territory on the Oregon coast. Tribal members from three tribes, the Confederated Tribes of Siletz Indians, the Coquille Indian Tribe, and the Confederated Tribes of Coos, Lower Umpqua, and Siuslaw Indians were interviewed for this project. The interviews centered around two themes: 1) past and present use of marine and coastal species, and 2) …

Reorganizing Algebraic Thinking: An Introduction To Dynamic System Modeling, Diana Fisher

Mathematics and Statistics Faculty Publications and Presentations

System Dynamics (SD) modeling is a powerful analytical method used by professional scientists, academics, and governmental officials to study the behavior patterns of complex systems. Specifically through use of the Stella software, it is a method that I and others have used for over two decades with high school, and even middle school, math and science students. In this paper I describe an introduction to SD modeling intended for an algebra class (in either middle or high school). In the body of the paper, a nested sequence of simple bank account examples, increasing in complexity, is used to demonstrate a …

Equators Have At Most Countable Many Singularities With Bounded Total Angle, Pilar Herreros, Mario Ponce, J.J.P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

For distinct points p and q in a two-dimensional Riemannian manifold, one defines their mediatrix Lpq as the set of equidistant points to p and q. It is known that mediatrices have a cell decomposition consisting of a finite number of branch points connected by Lipschitz curves. In the case of a topological sphere, mediatrices are called equators and it can benoticed that there are no branching points, thus an equator is a topological circle with possibly many Lipschitz singularities. This paper establishes that mediatrices have the radial …

On The Uniformity Of (3/2)N Modulo 1, Paula Neeley, Daniel Taylor-Rodriguez, J.J.P. Veerman, Thomas Roth

Mathematics and Statistics Faculty Publications and Presentations

It has been conjectured that the sequence (3/2)n modulo 1 is uniformly distributed. The distribution of this sequence is significant in relation to unsolved problems in number theory including the Collatz conjecture. In this paper, we describe an algorithm to compute (3/2)n modulo 1 to n = 108 . We then statistically analyze its distribution. Our results strongly agree with the hypothesis that (3/2)n modulo 1 is uniformly distributed.

The T6a Modification Acts As A Positive Determinant For The Anticodon Nuclease Prrc, And Is Distinctively Nonessential In Streptococcus Mutans, Jo Marie Bacusmo, Silvia S. Orsini, Jennifer Hu, Michael Demott, Patrick C. Thiaville, Ameer Elfarash, Mellie June Paulines, Diego Rojas-Benítez, Birthe Meineke, Christopher Deutsch, Dirk Iwata-Reuyl, Patrick A. Limbach, Peter C. Dedon, Kelly C. Rice, Stewart Shuman, Valérie De Crécy-Lagard

Chemistry Faculty Publications and Presentations

Endoribonuclease toxins (ribotoxins) are produced by bacteria and fungi to respond to stress, eliminate non-self competitor species, or interdict virus infection. PrrC is a bacterial ribotoxin that targets and cleaves tRNALys UUU in the anticodon loop. In vitro studies suggested that the post-transcriptional modification threonylcarbamoyl adenosine (t⁶A) is required for PrrC activity but this prediction had never been validated in vivo. Here, by using t⁶A-deficient yeast derivatives, it is shown that t⁶A is a positive determinant for PrrC proteins from various bacterial species. Streptococcus mutans is one of the few bacteria where the t …

Convergence Analysis Of A Proximal Point Algorithm For Minimizing Differences Of Functions, Thai An Nguyen, Mau Nam Nguyen

Mathematics and Statistics Faculty Publications and Presentations

Several optimization schemes have been known for convex optimization problems. However, numerical algorithms for solving nonconvex optimization problems are still underdeveloped. A significant progress to go beyond convexity was made by considering the class of functions representable as differences of convex functions. In this paper, we introduce a generalized proximal point algorithm to minimize the difference of a nonconvex function and a convex function. We also study convergence results of this algorithm under the main assumption that the objective function satisfies the Kurdyka– ᴌojasiewicz property.

Restoring Surface Fire Stabilizes Forest Carbon Under Extreme Fire Weather In The Sierra Nevada, Daniel J. Krofcheck, Matthew D. Hurteau, Robert M. Scheller, E. Louise Loudermilk

Environmental Science and Management Faculty Publications and Presentations

Climate change in the western United States has increased the frequency of extreme fire weather events and is projected to increase the area burned by wildfire in the coming decades. This changing fire regime, coupled with increased high-severity fire risk from a legacy of fire exclusion, could destabilize forest carbon (C), decrease net ecosystem exchange (NEE), and consequently reduce the ability of forests to regulate climate through C sequestration. While management options for minimizing the risk of high-severity fire exist, little is known about the longer-term carbon consequences of these actions in the context of continued extreme fire weather events. …

Evaluating Hourly Rainfall Characteristics Over The U.S. Great Plains In Dynamically Downscaled Climate Model Simulations Using Nasa-Unified Wrf, Huikyo Lee, Duane E. Waliser, Robert Ferraro, Takamichi Iguchi, Christa D. Peters-Lidard, Baijun Tian, Paul C. Loikith, Daniel B. Wright

Geography Faculty Publications and Presentations

Accurate simulation of extreme precipitation events remains a challenge in climate models. This study utilizes hourly precipitation data from ground stations and satellite instruments to evaluate rainfall characteristics simulated by the NASA-Unified Weather Research and Forecasting (NU-WRF) regional climate model at horizontal resolutions of 4, 12, and 24 km over the Great Plains of the United States. We also examined the sensitivity of the simulated precipitation to different spectral nudging approaches and the cumulus parameterizations. The rainfall characteristics in the observations and simulations were defined as an hourly diurnal cycle of precipitation and a joint probability distribution function (JPDF) between …

Predicting Risk Of Adverse Outcomes In Knee Replacement Surgery With Reconstructability Analysis, Cecily Corrine Froemke, Martin Zwick

Systems Science Faculty Publications and Presentations

Reconstructability Analysis (RA) is a data mining method that searches for relations in data, especially non-linear and higher order relations. This study shows that RA can provide useful predictions of complications in knee replacement surgery.

Mining Data On Traumatic Brain Injury With Reconstructability Analysis, Martin Zwick, Nancy Carney, Rosemary Nettleton

Systems Science Faculty Publications and Presentations

This paper reports the analysis of data on traumatic brain injury using a probabilistic graphical modeling technique known as reconstructability analysis (RA). The analysis shows the flexibility, power, and comprehensibility of RA modeling, which is well-suited for mining biomedical data. One finding of the analysis is that education is a confounding variable for the Digit Symbol Test in discriminating the severity of concussion; another - and anomalous - finding is that previous head injury predicts improved performance on the Reaction Time test. This analysis was exploratory, so its findings require follow-on confirmatory tests of their generalizability.

Grace's Inheritance, James Noble, Andrew P. Black, Kim B. Bruce, Michael Homer, Timothy Jones

Computer Science Faculty Publications and Presentations

This article is an apologia for the design of inheritance in the Grace educational programming language: it explains how the design of Grace’s inheritance draws from inheritance mechanisms in predecessor languages, and defends that design as the best of the available alternatives. For simplicity, Grace objects are generated from object constructors, like those of Emerald, Lua, and Javascript; for familiarity, the language also provides classes and inheritance, like Simula, Smalltalk and Java. The design question we address is whether or not object constructors can provide an inheritance semantics similar to classes.

Multi-Instrument Comparison And Compilation Of Non-Methane Organic Gas Emissions From Biomass Burning And Implications For Smoke-Derived Secondary Organic Aerosol Precursors, Lindsay E. Hatch, Robert J. Yokelson, Chelsea E. Stockwell, Patrick R. Veres, Isobel J. Simpson, Donald R. Blake, John J. Orlando, Kelley C. Barsanti

Civil and Environmental Engineering Faculty Publications and Presentations

Multiple trace-gas instruments were deployed during the fourth Fire Lab at Missoula Experiment (FLAME-4), including the first application of proton-transfer-reaction time-of-flight mass spectrometry (PTR-TOFMS) and comprehensive two-dimensional gas chromatography-time-offlight mass spectrometry (GC X GC-TOFMS) for laboratory biomass burning (BB) measurements. Open-path Fourier transform infrared spectroscopy (OP-FTIR) was also deployed, as well as whole-air sampling (WAS) with one-dimensional gas chromatography-mass spectrometry (GCMS) analysis. This combination of instruments provided an unprecedented level of detection and chemical speciation. The chemical composition and emission factors (EFs) determined by these four analytical techniques were compared for four representative fuels. The results demonstrate that the instruments …

Ph-Dependent Fluorescent Probe That Can Be Tuned For Cysteine Or Homocysteine, Yongkang Yue, Fangjun Huo, Xiaoqi Li, Ying Wen, Tao Yi, James C. Salamanca, Jorge O. Escobedo, Robert Strongin, Caixia Yin

Chemistry Faculty Publications and Presentations

The very close structural similarities between cysteine and homocysteine present a great challenge to achieve their selective detection using regular fluorescent probes, limiting the biological and pathological studies of these two amino thiols. A coumarin-based fluorescent probe was designed featuring pH-promoted distinct turn-on followed by ratiometric fluorescence responses for Cys and turn-on fluorescence response for Hcy through two different reaction paths. These specific responses demonstrate the activity differences between Cys and Hcy qualitatively for the first time. The probe could also be used for Cys and Hcy imaging in living cells.

Formulation Of Colloidal Suspensions Of 3-Mercaptopropionic Acid Capped Pbs Quantum Dots As Solution Processable Qd "Inks" For Optoelectronic Applications, Chase Collier Reinhart

Dissertations and Theses

The use of colloidal quantum dots (QDs) for photovoltaic energy conversion is a nascent field that has been dominated for well over a decade by the use of 3-mercaptopropionic acid (3-MPA) capped PbS QDs. These QDs are routinely deposited via an in situ solid state ligand exchange process that displaces the native oleate ligand on the PbS QD surface. This ligand exchange procedure is wasteful of material and has been demonstrated to leave numerous impurities that limit electronic performance of the as-deposited QD devices. Until the last few years there was very little understanding in chemical literature as to many …

Algorithm For Premature Ventricular Contraction Detection From A Subcutaneous Electrocardiogram Signal, Iris Lynn Shelly

Dissertations and Theses

Cardiac arrhythmias occur when the normal pattern of electrical signals in the heart breaks down. A premature ventricular contraction (PVC) is a common type of arrhythmia that occurs when a heartbeat originates from an ectopic focus within the ventricles rather than from the sinus node in the right atrium. This and other arrhythmias are often diagnosed with the help of an electrocardiogram, or ECG, which records the electrical activity of the heart using electrodes placed on the skin. In an ECG signal, a PVC is characterized by both timing and morphological differences from a normal sinus beat.

An implantable cardiac …

Geothermometry Of Two Cascade Geothermal Systems, Donnel Alexander Malkemus

Dissertations and Theses

For this thesis I applied classical and multi-component geothermometry techniques to new water chemistry data from Breitenbush Hot Springs, Oregon and the Wind River Valley, Washington. A total of 20 well, spring, and stream samples from Breitenbush Hot Springs and 4 spring samples from the Wind River Valley were collected and analyzed for major, minor, and select trace anions and cations, as well as stable oxygen and hydrogen isotopes. I used two computer programs, GeoT and RTEst, to conduct multi-component geothermometry reservoir condition estimation on each water sample. Water chemistry data from Breitenbush Hot Springs indicates a range of thermal, …

Investigations Into The Effects Of Water Exchange And The Structure Of Lanthanide Chelates, Katherine Marie Payne

Dissertations and Theses

Lanthanide chelates are effective agents for improving contrast in MR images. Optimizing the relaxation of inner sphere water molecules is a common focus of research in this field. However, the efforts to design an optimal contrast agent have commonly over-looked the relationship of water position and water exchange kinetics. This work explores structural conformation, the impact of very fast water exchange kinetics on hydration, and differing tumbling rates for regioisomers of a number of lanthanide chelates. We have grown crystals of LnDOTMA and obtained structural data by X-ray diffraction that provide a picture of the chelate during water exchange and …