Physical Sciences and Mathematics Commons^™

Asymptotic And Numerical Techniques For Resonances Of Thin Photonic Structures, Jay Gopalakrishnan, Shari Moskow, Fadil Santosa

Mathematics and Statistics Faculty Publications and Presentations

We consider the problem of calculating resonance frequencies and radiative losses of an optical resonator. The optical resonator is in the form of a thin membrane with variable dielectric properties. This work provides two very different approaches for doing such calculations. The first is an asymptotic method which exploits the small thickness and high index of the membrane. We derive a limiting resonance problem as the thickness goes to zero, and for the case of a simple resonance, find a first order correction. The limiting problem and the correction are in one less space dimension, which can make the approach …

On The Spectra Of Certain Directed Paths, Carlos Martins Da Fonseca, J. J. P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

We describe the eigenpairs of special kinds of tridiagonal matrices related to problems on traffic on a one-lane road. Some numerical examples are provided.

Utilization Of Revoicing Based On Learners‘ Thinking In An Inquiry-Oriented Differential Equations Class, Oh Kwon Nam, Mi Kyung Ju, Chris Rasmussen, Karen A. Marrongelle, Jae Hee Park, Kyoung Hee Cho, Jung Sook Park, Jee Hyun Park

Mathematics and Statistics Faculty Publications and Presentations

Researchers of mathematics education are increasingly interested in a teacher's discursive moves, which refer to deliberate actions taken by a teacher to participate in or influence debate and discussion in the mathematics classroom. This study explored one teacher's discursive moves in an undergraduate inquiry-oriented mathematics class. The data for this study come from four class sessions in which students investigated initial value problems as represented by the phase portrait of a system of differential equations. Through the analysis and a review of the literature, we identified four categories of a teacher's discursive moves: revoicing, questioning/requesting, telling, and managing. This report …

Hydrologic Response To Extreme Warm And Cold Summers In The Mcmurdo Dry Valleys, East Antarctica, Peter T. Doran, Christopher P. Mckay, Andrew G. Fountain, Thomas H. Nylen, Diane M. Mcknight, Chris Jaros, John E. Barrett

Geography Faculty Publications and Presentations

The meteorological characteristics and hydrological response of an extreme warm, and cold summer in the McMurdo Dry Valleys are compared. The driver behind the warmer summer conditions was the occurrence of down-valley winds, which were not present during the colder summer. Occurrence of the summer down-valley winds coincided with lower than typical mean sea level pressure in the Ross Sea region. There was no significant difference in the amount of solar radiation received during the two summers. Compared to the cold summer, glaciological and hydrological response to the warm summer in Taylor Valley included significant glacier mass loss, and 3- …

Reconstructing Images As Piecewise Smooth Functions, Ralf Juengling

Computer Science Faculty Publications and Presentations

Leclerc’s approach to image reconstruction consists of finding the shortest description of the data (an image) as a model (reconstruction) plus noise [5]. The approach poses two design problems: 1. Define an appropriate description language for image models and noise, 2. Derive an objective function and conceive an optimization algorithm that finds good local minima. Leclerc proposed to model images as piecewise low order polynomials and to describe models in terms of region boundaries (discontinuity set) and polynomial coefficients.

In this report I describe Leclerc’s methodology, and, adopting his image model and description language, derive an objective function within this …

Floodplains: Balancing Nature And Human Needs, Vivek Shandas, Meg Merrick

Institute for Sustainable Solutions Publications and Presentations

For countless years, the interaction between climatic conditions and water flow has forged the rolling hills and rivers in the metroscape. The floods that forced a deluge of water down the Columbia River between 13 and 17 thousand years ago established the fertile and absorptive landscape of the Willamette Valley. The lush vegetation controlled the regional climate and stabilized the soils, while the thirsty wetlands reduced flood potential, provided habitat, and purified the water. Over geological time, these natural processes have created ideal conditions for humans. The Pacific Northwest was home to some of the most densely populated communities of …

Patterns Of Aspect-Oriented Design, Black P. Andrew, James Noble, David J. Pearce, Arno Scmidmeir

Computer Science Faculty Publications and Presentations

Aspect-oriented programming languages are becoming commonplace, and programmers are accumulating experience in building and maintaining aspect-oriented systems. This paper addresses how the use of these languages affects program design: how aspect-oriented languages change the design space, which designs should be emulated and which avoided, and the strengths and weaknesses of particular kinds of design. We identify five patterns of aspect-oriented design: Spectator, Regulator, Patch, Extension, and Heterarchical Design. For each pattern, we describe the problem it solves, show how aspect-oriented language features are used in the pattern, give characteristic examples of the pattern’s use, and assess its benefits and liabilities. …

Refactoring Tools: Fitness For Purpose, Emerson Murphy-Hill, Andrew P. Black

Computer Science Faculty Publications and Presentations

Refactoring tools can improve the speed and accuracy with which we create and maintain software -- but only if they are used. In practice, tools are not used as much as they could be: this seems to be because sometimes they do not align with the refactoring tactic preferred by the majority of programmers, a tactic we call floss refactoring. We propose five principles that characterize successful floss refactoring tools -- principles that can help programmers to choose the most appropriate refactoring tools and also help toolsmiths to design tools that fit the programmer's purpose.

Scalable Concurrent Hash Tables Via Relativistic Programming, Josh Triplett

Computer Science Faculty Publications and Presentations

Existing approaches to concurrent programming often fail to account for synchronization costs on modern shared-memory multipro- cessor architectures. A new approach to concurrent programming, known as relativistic programming, can reduce or in some cases eliminate synchronization overhead on such architectures. This approach avoids the costs of inter-processor communication and memory access by permitting processors to operate from a relativistic view of memory provided by their own caches, rather than from an absolute reference frame of memory as seen by all processors. This research shows how relativistic programming techniques can provide the perceived advantages of optimistic synchronization without the useless parallelism …

Quantifying Twentieth Century Glacier Change In The Sierra Nevada, California, Hassan J. Basagic

Dissertations and Theses

Numerous small alpine glaciers occupy the high elevation regions of the central and southern Siena Nevada, California. These glaciers change size in response to variations in climate and are therefore important indicators of climate change. An inventory based on USGS topographic maps (l :24,000) revealed 1719 glaciers and perennial snow and ice features for a total area of 39.l5 ±7.52 km². The number of 'true' glaciers, versus non-moving ice, is estimated to be 118, covering 15.87 ± 1.69 Km². All glaciers were located on north to northeast aspects, at elevations >3000 m. Historical photographs, geologic evidence, …

New Particle Formation In The Front Range Of The Colorado Rocky Mountains, Micahel Boy, Thomas Karl, Andrew Turnipseed, Roy Lee Mauldin, Edward Kosciuch, James Greenberg, Jeff Rathbone, James Smith, Andreas Held, Kelley Barsanti, Alex Guenther

Civil and Environmental Engineering Faculty Publications and Presentations

New particle formation is of interest because of its influence on the properties of aerosol population, and due to the possible contribution of newly formed particles to cloud condensation nuclei. Currently no conclusive evidence exists as to the mechanism or mechanisms of nucleation and subsequent particle growth. However, nucleation rates exhibit a clear dependence on ambient sulphuric acid concentrations and particle growth is often attributed to the condensation of organic vapours. A detailed study of new particle formation in the Front Range of the Colorado Rocky Mountains is presented here. Gas and particle measurement data for 32 days was analyzed …

Plagioclase Populations And Zoning In Dacite Of The 2004–2005 Mount St. Helens Eruption: Constraints For Magma Origin And Dynamics, Martin J. Streck, Cindy A. Broderick, Carl R. Thornber, Michael A. Clynne, John S. Pallister

Geology Faculty Publications and Presentations

We investigated plagioclase phenocrysts in dacite of the 2004–5 eruption of Mount St. Helens to gain insights into the magmatic processes of the current eruption, which is char­acterized by prolonged, nearly solid-state extrusion, low gas emission, and shallow seismicity. In addition, we investigated plagioclase of 1980–86 dacite.

Light and Nomarski microscopy were used to texturally characterize plagioclase crystals. Electron microprobe analy­ses measured their compositions. We systematically mapped and categorized all plagioclase phenocrysts in a preselected area according to the following criteria: (1) occurrence of zones of acicular orthopyroxene inclusions, (2) presence of dissolution surface(s), and (3) spatial association of 1 …

Introduction To Special Section On Microcosms In Ice: The Biogeochemistry Of Cryoconite Holes, Andrew G. Fountain, Martyn Tranter

Geology Faculty Publications and Presentations

Cryoconite holes are small, water filled, cylindrical melt-holes on glacial ice surface. Cryoconite, 'cold dust,' refers to the thin layer of sediment at the hole bottom. The holes form from surficial sediment patches that absorbs more solar radiation than the surrounding ice and which preferentially melt into the glacier forming a cylindrical water-filled hole. These holes form on the ice-covered, as opposed to snow covered, parts of glaciers world-wide, wherever there is sufficient energy for melting. Biogeochemically, cryoconite holes are interesting because the sediment is inncoculated with biologic material, a fraction of which thrives in the cryoconite environment of near-freezing …

Biogeochemical Evolution Of Cryoconite Holes On Canada Glacier, Taylor Valley, Antarctica, Elizabeth A. Bagshaw, Martyn Tranter, Andrew G. Fountain, Kathleen A. Welch, Hassan J. Basagic, W. Berry Lyons

Geography Faculty Publications and Presentations

The cryoconite holes of the McMurdo Dry Valleys are simple, closed biogeochemical systems involving water, ice, mineral and organic debris, which serve as ecosystems for consortia of microorganisms. This study is the first to document the seasonal and annual chemical evolution of solutes in cryoconite holes. Samples of glacier ice, frozen cryoconite holes and those containing water were collected during the austral summer of 2005–2006. The isolation age was calculated from the excess Cl‾ in the holes, and varied from 0 to 5 years (a), consistent with the last hot summer when the cryoconite holes were open to the atmosphere. …

Goal-Oriented Job Scheduling For Parallel Computer Systems, Sangsuree Vasupongayya

Dissertations and Theses

System administrators for parallel computers face many difficulties when managing job scheduling systems. First, current production job schedulers use many parameters, which seem flexible but it is highly challenging to configure and tune these parameters. Second, fair share is an important scheduling goal, but it is not clear what kind of fair share can be expected under current schedulers and how fair share impacts scheduling performance. Third, several job runtime prediction methods were proposed to improve inaccurate user-estimated runtimes, but these methods could under-estimate runtimes by a large amount and it is not clear whether they are practical for use …

Report On Nutria Management And Research In The Pacific Northwest, Trevor Sheffels, Mark Sytsma

Center for Lakes and Reservoirs Publications and Presentations

The nutria (Myocastor coypus) is a large semi-aquatic mammal native to South America that has been introduced to numerous countries around the world, primarily for fur farming. Nutria were introduced in Oregon and Washington in the 1930s, and feral populations were documented in 1943. Populations are known to be expanding in both Oregon and Washington, and regional nutria damage and nuisance complaints have increased in recent years. Most of the extensive damage caused by nutria is a direct result of feeding and burrowing, but nutria are also capable of transporting parasites and pathogens transmittable to humans, livestock, and …

The Distribution And Reproductive Success Of The Western Snowy Plover Along The Oregon Coast - 2007, David J. Lauten, Kathleen J. Castelein, Raya Pruner, Marvin Friel, Eleanor P. Gaines

Institute for Natural Resources Publications

From 3 April – 21 September 2007, we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius alexandrinus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek, Tenmile Creek, Coos Bay North Spit, Bandon Beach, and New River. Our objectives for the Oregon coastal population in 2007 were to: 1) estimate the size of the adult Snowy Plover population, 2) locate plover nests, 3) continue selected use of mini-exclosures (MEs) to protect nests from predators …

Templated Fabrication Of Large Area Subwavelength Antireflection Gratings On Silicon, Chih-Hung Sun, Wei-Lun Min, Nicholas C. Linn, Peng Jiang, Bin Jiang

Mathematics and Statistics Faculty Publications and Presentations

We report a cheap and scalable bottom-up technique for fabricating wafer-scale, subwavelength-structured antireflection coatings on single-crystalline silicon substrates. Spin-coated monolayer colloidal crystals are utilized as shadow masks to generate metallic nanohole arrays. Inverted pyramid arrays in silicon can then be templated against nanoholes by anisotropic wet etching. The resulting subwavelength gratings greatly suppress specular reflection at normal incidence. The reflection spectra for flat silicon and the templated gratings at long wavelengths agree well with the simulated results using a rigorous coupled wave analysis model. These subwavelength gratings are of great technological importance in crystalline silicon solar cells.

What Is Rcu, Fundamentally?, Paul E. Mckenney, Jonathan Walpole

Computer Science Faculty Publications and Presentations

Read-copy update (RCU) is a synchronization mechanism that was added to the Linux kernel in October of 2002. RCU achieves scalability improvements by allowing reads to occur concurrently with updates. In contrast with conventional locking primitives that ensure mutual exclusion among concurrent threads regardless of whether they be readers or updaters, or with reader-writer locks that allow concurrent reads but not in the presence of updates, RCU supports concurrency between a single updater and multiple readers. RCU ensures that reads are coherent by maintaining multiple versions of objects and ensuring that they are not freed up until all pre-existing read-side …

Global Conservation Of Biodiversity And Ecosystem Services, Will R. Turner, Katrina Brandon, Thomas M. Brooks, Robert Costanza

Institute for Sustainable Solutions Publications and Presentations

Habitat destruction has driven much of the current biodiversity extinction crisis, and it compromises the essential benefits, or ecosystem services, that humans derive from functioning ecosystems. Securing both species and ecosystem services might be accomplished with common solutions. Yet it is unknown whether these two major conservation objectives coincide broadly enough worldwide to enable global strategies for both goals to gain synergy. In this article, we assess the concordance between these two objectives, explore how the concordance varies across different regions, and examine the global potential for safeguarding biodiversity and ecosystem services simultaneously. We find that published global priority maps …

The Characterization Of Trna Modifying Enzymes S-Adenosylmethionine : Trna Ribosyltransferase-Isomerase (Quea) And A Novel Type I Gtp Cyclohydrolase, Shilah Amal Bonnett

Dissertations and Theses

Queuosine is a hypermodified nucleoside located in the wobble position of bacterial and eukaryotic tRNAs coding for Asp, Tyr, His and Asn. The biosynthesis involves the participation of S-adenosyl-methionine:tRNA ribosyltransferase-isomerase (QueA) and a GTP Cyclohydrolase-I. QueA catalyzes the transfer and isomerization of the ribosyl moiety from AdoMet to preQ1 modified tRNA. Substrate analogs of AdoMet were used to elucidate important substrate-enzyme interactions and to test key steps in the proposed chemical mechanism. Replacing AdoMet with SeAdoMet had little effect upon substrate binding but exhibited 30-fold reduction in kcat, consistent with deprotonation at C-5' as the first catalytic step. 7-deazaAdoMet failed …

Pend Oreille River Model: Model Scenario Simulations, Robert Leslie Annear, Chris Berger, Scott A. Wells

Civil and Environmental Engineering Faculty Publications and Presentations

The Idaho Department of Environmental Quality is interested in developing a temperature and water quality Total Maximum Daily Load (TMDL) allocation for the Pend Oreille River between the Long Bridge near the historical Lake Pend Oreille outlet and Albeni Falls Dam (U.S. Army Corps of Engineer’s reservoir) as shown in Figure 1.

This management scenario report is an update of a prior report. The management scenarios had to be rerun because of a modeling error made with the outflows rate of Albeni Falls Dam. The new calibration error statistics were compared with the old statistics in Appendix B: Model Calibration …

The Urban Heat Island Mitigation Impact Screening Tool (Mist), David J. Sailor, Nikolaas Dietsch

Mechanical and Materials Engineering Faculty Publications and Presentations

A web-based software tool has been developed to assist urban planners and air quality management officials in assessing the potential of urban heat island mitigation strategies to affect the urban climate, air quality, and energy consumption within their cities. The user of the tool can select from over 170 US cities for which to conduct the analysis, and can specify city-wide changes in surface reflectivity and/or vegetative cover. The Mitigation Impact Screening Tool (MIST) then extrapolates results from a suite of simulations for 20 cities to estimate air temperature changes associated with the specified changes in surface characteristics for the …

Effects Of Human Choices On Characteristics Of Urban Ecosystems, Lawrence A. Baker, Anthony J. Brazel, Loren Bryne, Alex Felson, Morgan Grove, Kristina Hill, Kristen C. Nelson, Jason Walker, Vivek Shandas

Institute for Sustainable Solutions Publications and Presentations

Most urban ecology in cities remains an "ecology in cities" rather than an "ecology of cities." Accomplishing the latter requires the inclusion of humans within the concept of "ecosystem," both how humans alter the properties of urban ecosystems and how these alterations in turn influence human well-being. These influences are both direct (e.g., physiological and psychological influences on the human organism) and indirect, by influencing ecosystem sustainability. For the 2007 ESA meeting, Larry Baker, Loren Byrne, Jason Walker, and Alex Felson organized a symposium to address the relationships among human choices and urban ecosystems. In the introductory talk of this …

Self-Assembled Biomimetic Antireflection Coatings, Nicholas C. Linn, Chih-Hung Sun, Peng Jiang, Bin Jiang

Mathematics and Statistics Faculty Publications and Presentations

The authors report a simple self-assembly technique for fabricating antireflection coatings that mimic antireflective moth eyes. Wafer-scale, nonclose-packed colloidal crystals with remarkable large hexagonal domains are created by a spin-coating technology. The resulting polymer-embedded colloidal crystals exhibit highly ordered surface modulation and can be used directly as templates to cast poly(dimethylsiloxane) (PDMS) molds. Moth-eye antireflection coatings with adjustable reflectivity can then be molded against the PDMS master. The specular reflection of replicated nipple arrays matches the theoretical prediction using a thin-film multilayer model. These biomimetic films may find important technological application in optical coatings and solar cells.

Environmental Controls On The Landscape-Scale Biogeography Of Stream Bacterial Communities, Noah Fierer, Jennifer L. Morse, Sean T. Berthrong, Emily S. Bernhardt, Robert B. Jackson

Environmental Science and Management Faculty Publications and Presentations

We determined the biogeographical distributions of stream bacteria and the biogeochemical factors that best explained heterogeneity for 23 locations within the Hubbard Brook watershed, a 3000-ha forested watershed in New Hampshire, USA. Our goal was to assess the factor, or set of factors, responsible for generating the biogeographical patterns exhibited by microorganisms at the landscape scale. We used DNA fingerprinting to characterize bacteria inhabiting fine benthic organic matter (FBOM) because of their important influence on stream nutrient dynamics. Across the watershed, streams of similar pH had similar FBOM bacterial communities. Streamwater pH was the single variable most strongly correlated with …

Interview With Anthony Boutard, Ayers Creek Farm, 2007 (Audio), Anthony Boutard

All Sustainability History Project Oral Histories

Interview of Anthony Boutard by Magda Gaytan at Ayers Creek Farm on August 10th, 2007.

The interview index is available for download.

Interview With Dan J. Wilson, Sudan Farms, 2007 (Audio), Dan J. Wilson

All Sustainability History Project Oral Histories

Interview of Dan J. Wilson by Jason Keaton at Canby, Oregon on August 10th, 2007.

The interview index is available for download.

Interview With Trevor Baird, Baird Family Orchard, 2007 (Audio), Trevor Baird

All Sustainability History Project Oral Histories

Interview of Trevor Baird by Adam Hopfe at Portland State University on August 7th, 2007.

The interview index is available for download.

Interview With Melissa & Rod Volbeda, Willamette Valley Cheese, 2007 (Audio), Melissa Volbeda, Rod Volbeda

All Sustainability History Project Oral Histories

Interview of Melissa and Rod Volbeda by Magda Gaytan on August 6th, 2007.

Willamette Valley Cheese Company tour photos available for download.