Physical Sciences and Mathematics Commons^™

Draft Genome Sequence Of Acetobacter Aceti Strain 1023, A Vinegar Factory Isolate, John Hung, Christopher Mill, Sandra Clifton, Vincent Magrini, Ketaki Bhide, Julie Francois, Aaron Ransome, Lucinda Fulton, Jyothi Thimmapuram, Richard Wilson, T. Joseph Kappock

Cyber Center Publications

The genome sequence of Acetobacter aceti 1023, an acetic acid bacterium adapted to traditional vinegar fermentation, comprises 3.0 Mb (chromosome plus plasmids). A. aceti 1023 is closely related to the cocoa fermenter Acetobacter pasteurianus 386B but possesses many additional insertion sequence elements.

Libraries Respond To Mobile Ubiquity: Research And Assessment Of Mobile Device Usage Trends For Academic And Medical Libraries, Megan M. Hurst, Eleanor I. Cook, J. Michael Lindsay, Martha F. Earl

Charleston Library Conference

The authors consider trends in mobile device usage for the Internet as a whole, for EBSCO Discovery Service across all client libraries, and at two specific libraries: Preston Medical Library, serving the University of Tennessee (UT) Graduate School of Medicine and UT Medical Center, and the Joyner Library at East Carolina University, serving students and faculty on the main campus. Librarians at Preston Medical Library conducted a survey to determine which mobile devices, platforms, and apps were used by their patrons in 2012. East Carolina University piloted an iPad and e-reader lending program in 2010–2011. The results of each are …

Building A Framework For Indiana Geospatial Education, Benjamin D. Branch, Kathy L. Kozenski

Libraries Faculty and Staff Presentations

No abstract provided.

Metal Stopping Reagents Facilitate Discontinuous Activity Assays Of The De Novo Purine Biosynthesis Enzyme Pure, Kelly L. Sullivan, Loredana C. Huma, Elwood Mullins, Michael E. Johnson, T. Joseph Kappock

Department of Biochemistry Faculty Publications

The conversion of 5-aminoimidazole ribonucleotide (AIR) to 4-carboxy-AIR (CAIR) represents an unusual divergence in purine biosynthesis: microbes and nonmetazoan eukaryotes use class I PurEs while animals use class II PurEs. Class I PurEs are therefore a potential antimicrobial target; however, no enzyme activity assay is suitable for high throughput screening (HTS). Here we report a simple chemical quench that fixes the PurE substrate/product ratio for 24 h, as assessed by the Bratton-Marshall assay (BMA) for diazotizable amines. The ZnSO₄ stopping reagent is proposed to chelate CAIR, enabling delayed analysis of this acid-labile product by BMA or other HTS methods

A Practical Approach For Provenance Transmission In Wireless Sensor Networks, S.M. Iftekharul Alam, Sonia Fahmy

Cyber Center Publications

Assessing the trustworthiness of sensor data and transmitters of this data is critical for quality assurance. Trust evaluation frameworks utilize data provenance along with the sensed data values to compute the trustworthiness of each data item. However, in a sizeable multi-hop sensor network, provenance information requires a large and variable number of bits in each packet, resulting in high energy dissipation due to the extended period of radio communication. In this paper, we design energy-efficient provenance encoding and construction schemes, which we refer to as Probabilistic Provenance Flow (PPF). Our work demonstrates the feasibility of adapting the Probabilistic Packet Marking …

Feasibility Analysis Of Large Length-Scale Thermocapillary Flow Experiment For The International Space Station, Samantha Jean Alberts

Open Access Theses

The investigation of microgravity fluid dynamics emerged out of necessity with the advent of space exploration. In particular, capillary research took a leap forward in the 1960s with regards to liquid settling and interfacial dynamics. Due to inherent temperature variations in large spacecraft liquid systems, such as fuel tanks, forces develop on gas-liquid interfaces which induce thermocapillary flows. To date, thermocapillary flows have been studied in small, idealized research geometries usually under terrestrial conditions. The 1 to 3m lengths in current and future large tanks and hardware are designed based on hardware rather than research, which leaves spaceflight systems designers …

Examining Sustainability Attitudes And Practices Among Overthe-Road Logistics Companies Operating In Indiana, Robert Louis Crull Iii

Open Access Theses

This research study takes a look at the sustainable attitude/awareness level and practices of over-the-road logistics companies operating in Indiana. It has a descriptive study design, providing information in an area that has not been previously analyzed. As the world adopts a "greener" mindset with the purpose of reducing the carbon footprint, this study helps lead the way towards this goal. It allows for the performance of further research into the reasons certain companies focus on sustainable practices more than others. Eventually, the hope is to increase the amount of companies operating sustainably.

The research study included an in-depth literature …

Drift-Flux Correlation Development For Two-Phase Flow In Rod Bundles, Collin M. Clark

Open Access Theses

A rod bundle drift-flux correlation is developed with intended application across a wide range of two-phase flow conditions. Special consideration is made for fluid flow mechanisms at low liquid velocity and low pressure conditions. In these instances, gravitational forces from the density difference of the associated fluid phases are more significant. Secondary flow patterns may develop as a result and a drift-flux correlation would need to make appropriate adjustments. Earlier correlations may have increased error at these conditions if they have been formulated with respect to relatively higher pressures or flow rates. In the present work, area-average void fraction data …

Cosmogenic Beryllium Cycling In A Natural Forest Setting, Grace Conyers

Open Access Theses

10 Bemet , or cosmogenic beryllium, has a long half-life of 1.4 million years and quick adsorption on soil particles, which may make it ideal for dating soil erosion in historical context. However, there are questions on about the fundamental assumptions of the retentivity of 10 Bemet . This manuscript explores these assumptions and the context of nutrient cycling in a natural forest setting.

To see if 10 Bemet was being cycled through the trees, and at what rate, we looked at the[10 Bemet ] in the soil, 4 species of trees, and their leaves. The isotopic ratio 10 Be/9 …

The Development Of 6.7% Efficient Copper Zinc Indium Selenide Devices From Copper Zinc Indium Sulfide Nanocrystal Inks, Brian Kemp Graeser

Open Access Theses

As solar cell absorber materials, alloys of CuIn(S,Se)2 and Zn(S,Se) provide an opportunity to reduce the usage of indium along with the ability to tune the band gap. Here we report successful synthesis of alloyed (CuInS2 )0.5(ZnS)0.5 nanocrystals by a method that solely uses oleylamine as the liquid medium for synthesis. The reactive sintering of a thin film of these nanocrystals via selenization at 500 °C results in a uniform composition alloy (CuIn(S,Se)2 )0.5 (Zn(S,Se)) 0.5 layer with micron size grains. Due to the large amount of zinc in the film, the sintered grains exhibit the zinc blende structure instead …

Emotion Capture: Emotion Mimicry Using Facial Motion Capture, Thomas Emmauel Haley-Hermiz

Open Access Theses

This study explored the application of facial motion capture to Autism Spectrum Disorder therapy. The FaceShift technology was utilized in a behavior change intervention for children with ASD. The intervention focused on using facial expressions to display emotions.

The results of the study exhibit that all students involved achieved a higher percent in both facial expressions attempted and successfully demonstrated in intervention over baseline. However, this increase was not maintained in generalization. Without a successful generalization the intervention would not be recommended in its current framework. Recommendations for further research are provided.

Cztsse Thin Film Solar Cells : Surface Treatments, Chinmay S. Joglekar

Open Access Theses

Chalcopyrite semiconducting materials, specifically CZTS, are a promising alternative to traditional silicon solar cell technology. Because of the high absorption coefficient; films of the order of 1 micrometer thickness are sufficient for the fabrication of solar cells. Liquid based synthesis methods are advantageous because they are easily scalable using the roll to roll manufacturing techniques.

Various treatments are explored in this study to enhance the performance of the selenized CZTS film based solar cells. Thiourea can be used as a sulfur source and can be used to tune band gap of CZTSSe. Bromine etching can be used to manipulate the …

Just Noticeable Difference Survey Of Computer Generated Imagery Using Normal Maps, Michael Edward Hoerter

Open Access Theses

Normal maps are widely used as a resource-efficient means of simulating detailed topology on 3D surfaces in the gaming, simulation, and film industries. However, as surface mesh density increases, it is unknown at what level of density these increases become no longer perceivable, and whether normal maps significantly affect this threshold. This study examined at what point participants were unable to discern differences between one level of mesh density and another using an adapted staircase model. Participants identified this threshold for five different organic character models. The averages of each of these thresholds were taken and compared against the results …

Underground Natural Gas Storage: An Examination Of Property Values In Indiana, Michaela Jellicoe

Open Access Theses

Recent years have seen increased discussion of issues related to natural gas, generally focusing on perceived risks associated with natural gas extraction. One aspect of natural gas extraction that has received little attention is the impact of natural gas storage on surrounding areas. Further, recent advances in horizontal drilling and hydraulic fracturing extraction techniques have greatly increased production of natural gas wells, and will likely increase demand for natural gas storage. Like other natural gas wells, underground storage wells have the potential for environmental and amenity impacts. The impacts of these risks may be reflected by a reduction in the …

Assessing The User Experience When Using Mobile Augmented Reality In Advertising, Shanshan Li

Open Access Theses

Facing huge profits brought by applying augmented reality (AR) to advertising on mobile devices, this study investigated the user experience from four dimensions as emotional, instrumental, motivational and social experience when using AR as an advertising tool. It aims to help designers understand that how the user experience emerges during the use of AR advertising tool. In addition, providing some design suggestions to AR designer. Eighteen participants were recruited and the data were collected through observation and interviews. According to the results, users evaluated their emotional experience higher than the other three dimensions. The AR's value in building brand awareness …

Investigation Of Isotope Effects Of Ozone As A Function Of Temperature, Daniel J. Mcmahon

Open Access Theses

Ozone is an important oxidizer in the atmosphere and plays a crucial role as a cleanser, removing various compounds such NOx and SOx. It also is intriguing to those that study stable isotopes as it has a unique signature found in no other oxygen containing molecule. Ozone is observed to fractionate mass independently, which means it does not follow the typical δ 17 O /δ18 O = 0.52 ratio expected for molecules enriched with 17 O and 18 O. The magnitude of ozone's mass independent enrichment has been studied in laboratory experiments and atmospheric observations but its explanation is still …

Senescence: An Aging Based Character Simulation Framework, Suren Deepak Rajasekaran

Open Access Theses

The 'Senescence' framework is a character simulation plug-in for Maya that can be used for rigging and skinning muscle deformer based humanoid characters with support for aging. The framework was developed using Python, Maya Embedded Language and PyQt. The main targeted users for this framework are the Character Technical Directors, Technical Artists, Riggers and Animators from the production pipeline of Visual Effects Studios. The characters that were simulated using 'Senescence' were studied using a survey to understand how well the intended age was perceived by the audience. The results of the survey could not reject one of our null hypotheses …

Deforestation Of Cloud Forest In The Central Highlands Of Guatemala: Soil Erosion And Sustainability Implications For Q'Eqchi' Maya Communities, Ian Christopher Pope

Open Access Theses

Understanding the nexus between deforestation, food production, land degradation, and culture contributes knowledge that is useful for development practitioners working to enhance conservation and food security. Documenting deforestation and soil erosion in the Sierra Yalijux and Sierra Sacranix in the Central Highlands of Guatemala adds new knowledge about the rates and dynamics of deforestation and land degradation in areas with unique and sensitive cloud forest ecosystems. It also suggests possible areas of emphasis for efforts targeted at combining cloud forest conservation with sustainability for indigenous Q'eqchi' communities. In addition, this work contributes to a small but growing body of literature …

Software Architecture And Development For Controlling A Hubo Humanoid Robot, Manas Ajit Paldhe

Open Access Theses

Due to their human-like structure, humanoid robots are capable of doing some complex tasks. Since a humanoid robot has a large number of actuators and sensors, controlling it is a difficult task. For various tasks like balancing, driving a car, and interacting with humans, real-time response of the robot is essential. Efficiently controlling a humanoid robot requires a software that guarantees real-time interface and control mechanism so that real-time response of the robot is possible. Addition- ally, to reduce the development effort and time, the software should be open-source, multi-lingual and should have high-level constructs inbuilt in it.

Currently Robot …

The Geologic Framework Of Acoma Pueblo And Its Cultural Context: A Western & Native Perspective, Darryl Reano

Open Access Theses

The sequence of sedimentary rocks at Acoma Pueblo, New Mexico, are important both in terms of their cultural significance for the Native people of Acoma Pueblo and the insight they provide into the long term geologic history of the Colorado Plateau. In this thesis we present the first stratigraphic and provenance analysis of the Mesozoic strata at Acoma Pueblo, New Mexico, based on field observations and detrital zircon U-Pb geochronology. Acoma Pueblo was located in the distal part (i.e. backbulge) of a foreland basin system during most of the Mesozoic. Acoma Pueblo has not been included in previous regional studies …

Analysis Of Eye Tracking Data Obtained By Customers’ Product Evaluations, Shweta Sanjay Sareen

Open Access Theses

Within the mechanical engineering discipline, product representational studies have been used to inform engineers on the suitability of their product designs for prospective customers. Mainly based in customers' oral responses, engineers would modify the product design accordingly. The incorporation of eye tracking data, in addition to the oral responses, in these product representational studies is a recent addition. This case study performs data analysis of a product representational study conducted by Reid, MacDonald and Du (2012), which considers the impact of 2D and 3D product representation on customer judgments with associated eye gaze patterns. The aim of this thesis is …

Floodplain Mapping Using Soil Survey Geographic (Ssurgo) Database, Nikhil Sangwan

Open Access Theses

Floods are the most damaging of all natural disasters, adversely affecting millions of lives and causing financial losses worth billions of dollars every year across the globe. Flood inundation maps play a key role in assessment and mitigation of the potential flood hazards. However, there are several communities in the United States for which the flood risk maps have not been published yet, as the current flood inundation mapping methods are typically very expensive and time consuming. The objective of this study is to develop and examine an economical alternative approach to floodplain mapping using widely available soil survey data. …

Oxidative Stress In Algae: Method Development And Effects Of Temperature On Antioxidant Nuclear Signaling Compounds, Md Noman Siddiqui

Open Access Theses

Non-enzymatic antioxidants neutralize the oxidative stress through scavenging reactive oxygen species. The structural complexity of non-enzymatic nuclear signaling antioxidants poses are more challenges for traditional quantitative analysis as these compounds have multiple forms and structurally diverse than proteins and therefore, challenge traditional analytical techniques. Current analytical methods cannot distinguish the carotenoids, and vitamin A and D metabolites within a single sample. To find an appropriate method to measure all the nuclear signaling compounds in algae, Isochrysis sp. , under thermal stress, HPLC/ESI-MS and HPLC /APPI-MS was used. Standards of those compounds were run by QQQ HPLC/ ESI-MS and HPLC /APPI-MS …

Applications Of Calculated Second Harmonic Generation Tensors On Monomolecular And Bimolecular Systems, Gregory R. Snyder

Open Access Theses

The field of nonlinear optics (NLO) has proven itself as a relatively recent and powerful area of science in the areas of microscopy and high-sensitivity quantification measurements. In particular, symmetry selective NLO processes such as second harmonic generation (SHG) take advantage of symmetry rules to cancel background noise almost completely, leading to both high resolution images and limits of detection (LOD) in the photon counting range. Background noise in SHG is negated as result of signal cancellation in systems containing inversion symmetry; generally isotropic sources. Quantum mechanical computational chemistry has enriched the field of NLO by enabling studies on hypothetical …

Part I: Neoacadian To Alleghanian Foreland Basin Development And Provenance In The Central Appalachian Orogen, Pine Mountain Thrust Sheet Part Ii: Structural Configuration Of A Modified Mesozoic To Cenozoic Forearc Basin System, South-Central Alaska, Peter Benjamin Robertson

Open Access Theses

Foreland and forearc basins are large sediment repositories that form in response to tectonic loading and lithospheric flexure during orogenesis along convergent plate boundaries. In addition to their numerous valuable natural resources, these systems preserve important geologic information regarding the timing and intensity of deformation, uplift and erosion history, and subsidence history along collisional margins, and, in ancient systems, may provide more macroscopic information regarding climate, plate motion, and eustatic sea level fluctuations. This thesis presents two studies focused in the Paleozoic Appalachian foreland basin system along the eastern United States and in the Mesozoic to Cenozoic Matanuska forearc basin …

Moving Object Detection For Interception By A Humanoid Robot, Saltanat B. Tazhibayeva

Open Access Theses

Interception of a moving object with an autonomous robot is an important problem in robotics. It has various application areas, such as in an industrial setting where products on a conveyor would be picked up by a robotic arm, in the military to halt intruders, in robotic soccer (where the robots try to get to the moving ball and try to block an opponent's attempt to pass the ball), and in other challenging situations. Interception, in and of itself, is a complex task that demands a system with target recognition capability, proper navigation and actuation toward the moving target. There …

Reliability Guided Resource Allocation For Large-Scale Supercomputing Systems, Shruti Umamaheshwaran

Open Access Theses

In high performance computing systems, parallel applications request a large number of resources for long time periods. In this scenario, if a resource fails during the application runtime, it would cause all applications using this resource to fail. The probability of application failure is tied to the inherent reliability of resources used by the application. Our investigation of high performance computing systems operating in the field has revealed a significant difference in the measured operational reliability of individual computing nodes. By adding awareness of the individual system nodes' reliability to the scheduler along with the predicted reliability needs of parallel …

A Farm Management Information System With Task-Specific, Collaborative Mobile Apps And Cloud Storage Services, Jonathan Tyler Welte

Open Access Theses

Modern production agriculture is beginning to advance beyond deterministic, scheduled operations between relatively few people to larger scale, information-driven efficiency in order to respond to the challenges of field variability and meet the needs of a growing population. Since no two farms are the same with respect to information and management structure, a specialized farm management information system (FMIS) which is tailored to the realities on the ground of individual farms is likely to be more effective than generalized FMIS available today.

This thesis presents the design of a FMIS using proven user-centered design principles. This approach resulted in the …

Retrofiting Lid Practices Into Existing Neighborhoods: Is It Worth It?, Timothy Wright

Open Access Theses

Low impact development (LID) practices are gaining popularity as a way to manage stormwater close to the source. This reduces infrastructure requirements and helps to maintain hydrologic processes close to predevelopment conditions. Studies have shown LID practices to be effective in reducing runoff and improving water quality. However, little has been done to aid decision makers in selecting the most effective practices for their needs and budgets.

To this end, the L-THIA LID model has been applied. Using readily available data sources, multiple scenarios can quickly be examined, and then analyzed to determine the cost of implementation and the approximate …

Determinants Of Energy Efficiency Across Countries, Guolin Yao

Open Access Theses

With economic development, environmental concerns become more important. Economies cannot be developed without energy consumption, which is the major source of greenhouse gas emissions. Higher energy efficiency is one means of reducing emissions, but what determines energy efficiency?

In this research we attempt to find answers to this question by using cross-sectional country data; that is, we examine a wide range of possible determinants of energy efficiency at the country level in an attempt to find the most important causal factors. All countries are divided into three income groups: high-income countries, middle-income countries, and low-income countries. Energy intensity is used …