Physical Sciences and Mathematics Commons^™

Helicobacter Pylori Flha Binds The Sensor Kinase And Flagellar Gene Regulatory Protein Flgs With High Affinity, Jennifer Tsang, Takanori Hirano, Timothy R. Hoover, Jonathan L. Mcmurry

Jonathan McMurry

Flagellar biogenesis is a complex process that involves multiple checkpoints to coordinate transcription of flagellar genes with the assembly of the flagellum. In Helicobacter pylori, transcription of the genes needed in the middle stage of flagellar biogenesis is governed by RpoN and the two-component system consisting of the histidine kinase FlgS and response regulator FlgR. In response to an unknown signal, FlgS autophosphorylates and transfers the phosphate to FlgR, initiating transcription from RpoNdependent promoters. In the present study, export apparatus protein FlhA was examined as a potential signal protein. Deletion of its N-terminal cytoplasmic sequence dramatically decreased expression of two …

The Ultraviolet Attenuation Law In Backlit Spiral Galaxies., William C. Keel, Anna M. Manning, Benne W. Holwerda, Chris J. Lintott, Kevin Schawinski

Benne Holwerda

The effective extinction law (attenuation behavior) in galaxies in the emitted ultraviolet (UV) regime is well known only for actively star-forming objects and combines effects of the grain properties, fine structure in the dust distribution, and relative distributions of stars and dust. We use Galaxy Evolution Explorer, XMM Optical Monitor, and Hubble Space Telescope (HST) data to explore the UV attenuation in the outer parts of spiral disks which are backlit by other UV-bright galaxies, starting with the candidate list of pairs provided by Galaxy Zoo participants. New optical images help to constrain the geometry and structure of the target …

Constraining The Age Of The Ngc 4565 Hi Disk Warp : Determining The Origin Of Gas Warps., David J. Radburn-Smith, Roelof S. De Jong, David Streich, Eric F. Bell, Julianne J. Dalcanton, Andrew E. Dolphin, Adrienne M. Stilp, Antonela Monachesi, Benne W. Holwerda, Jeremy Bailin

Benne Holwerda

We have mapped the distribution of young and old stars in the gaseous H i warp of NGC 4565. We find a clear correlation of young stars (< 600 Myr) with the warp but no coincident old stars (> 1 Gyr), which places an upper limit on the age of the structure. The formation rate of the young stars, which increased ∼ 300 Myr ago relative to the surrounding regions, is (6.3+2.5 −1.5) × 10−5 M yr−1 kpc−2. This implies a ∼ 60 ± 20 Gyr depletion time of the H i warp, similar to the timescales calculated for the outer H i disks of nearby spiral galaxies. While some stars …

Quantified H I Morphology – Vii. Star Formation And Tidal Influence On Local Dwarf H I Morphology., Benne W. Holwerda, N. Pirzkal, W. J. G. De Blok, S. -L. Blyth

Benne Holwerda

Scale-invariant morphology parameters applied to atomic hydrogen maps (H i) of galaxies can be used to quantify the effects of tidal interaction or star formation on the interstellar matter (ISM). Here we apply these parameters, concentration, asymmetry, smoothness, Gini, M20, and the GM parameter, to two public surveys of nearby dwarf galaxies, the Very Large Array-ANGST and Local Irregulars That Trace Luminosity Extremes-The H i Nearby Galaxy Survey, to explore whether tidal interaction or the ongoing or past star formation is a dominant force shaping the H i disc of these dwarfs. Previously, H i morphological criteria were identified for …

X-Ray Nuclear Activity In S4g Barred Galaxies : No Link Between Bar Strength And Co-Occurrent Supermassive Black Hole Fueling., Mauricio Cisternas, Dimitri A. Gadotti, Johan H. Knapen, Taehyun Kim, Simon Diaz-Garcia, Eija Laurikainen, Heikki Salo, Omaira Gonzalez-Martin, Luis C. Ho, Bruce G. Elmegreen, Dennis Zaritsky, Kartik Sheth, E. Athanassoula, Albert Bosma, Sebastien Comeron, Santiago Erroz-Ferrer, Armando Gil De Paz, Joannah L. Hinz, Benne W. Holwerda, Jarkko Laine, Sharon Meidt, Karin Menendez-Delmestre, Trisha Mizusawa, Juan Carlos Munoz-Mateos, Michael W. Regan, Mark Seibert

Benne Holwerda

Stellar bars can lead to gas inflow toward the center of a galaxy and stimulate nuclear star formation. However, there is no compelling evidence on whether they also feed a central supermassive black hole: by measuring the fractions of barred active and inactive galaxies, previous studies have yielded conflicting results. In this paper, we aim to understand the lack of observational evidence for bar-driven active galactic nucleus (AGN) activity by studying a sample of 41 nearby (d < 35 Mpc) barred galaxies from the Spitzer Survey for Stellar Structure in Galaxies. We use Chandra observations to measure nuclear 2–10 keV X-ray …

Embedded Star Formation In S4g Galaxy Dust Lanes., Debra M. Elmegreen, Bruce G. Elmegreen, Santiago Erroz-Ferrer, Johan H. Knapen, Yaron Teich, Mark Popinchalk, E. Athanassoula, Albert Bosma, Sebastien Comeron, Yuri N. Efremov, Dimitri A. Gadotti, Armando Gil De Paz, Joannah L. Hinz, Luis C. Ho, Benne W. Holwerda, Taehyun Kim, Jarkko Laine, Eija Laurikainen, Karin Menendez-Delmestre, Trisha Mizusawa, Juan Carlos Munoz-Mateos, Michael W. Regan, Heikki Salo, Mark Seibert, Kartik Sheth

Benne Holwerda

Star-forming regions that are visible at 3.6 μm and Hα but not in the u, g, r, i, z bands of the Sloan Digital Sky Survey are measured in five nearby spiral galaxies to find extinctions averaging ∼3.8 mag and stellar masses averaging ∼5 × 104 M. These regions are apparently young star complexes embedded in dark filamentary shock fronts connected with spiral arms. The associated cloud masses are ∼107 M. The conditions required to make such complexes are explored, including gravitational instabilities in spiral-shocked gas and compression of incident clouds. We find that instabilities are too slow for a …

Ghosts I : A New Faint Very Isolated Dwarf Galaxy At D = 12 ± 2 Mpc., Antonela Monachesi, Eric F. Bell, David J. Radburn-Smith, Roelof S. De Jong, Jeremy Bailin, Julianne J. Dalcanton, Benne W. Holwerda, H. Alyson Ford, David Streich, Marija Vlajic, Daniel B. Zucker

Benne Holwerda

We report the discovery of a new faint dwarf galaxy, GHOSTS I, using HST/ACS data from one of our GHOSTS (Galaxy Halos, Outer disks, Substructure, Thick disk, and Star clusters) fields. Its detected individual stars populate an approximately 1 mag range of its luminosity function (LF). Using synthetic color–magnitude diagrams (CMDs) to compare with the galaxy’s CMD, we find that the colors and magnitudes of GHOSTS I’s individual stars are most consistent with being young helium-burning and asymptotic giant branch stars at a distance of ∼12±2 Mpc. Morphologically, GHOSTS I appears to be actively forming stars, so we tentatively classify …

Morphological Parameters Of A Spitzer Survey Of Stellar Structure In Galaxies., Benne W. Holwerda, J. C. Munoz-Mateos, S. Comeron, S. Meidt, K. Sheth, S. Laine, J. L. Hinz, M. W. Regan, A. Gil De Paz, K. Menendez-Delmestre, M. Seibert, T. Kim, T. Mizusawa, E. Laurikainen, H. Salo, J. Laine, D. A. Gadotti, D. Zaritsky, S. Erroz-Ferrer, L. C. Ho, J. H. Knapen, E. Athanassoula, A. Bosma, N. Pirzkal

Benne Holwerda

The morphology of galaxies can be quantified to some degree using a set of scale-invariant parameters. Concentration (C), asymmetry (A), smoothness (S), the Gini index (G), the relative contribution of the brightest pixels to the secondorder moment of the flux (M20), ellipticity (E), and the Gini index of the second-order moment (GM) have all been applied to morphologically classify galaxies at various wavelengths. Here, we present a catalog of these parameters for the Spitzer Survey of stellar structure in Galaxies, a volume-limited, near-infrared (NIR) imaging survey of nearby galaxies using the 3.6 and 4.5μm channels of the Infrared Array Camera …

Arrakis : Atlas Of Resonance Rings As Known In The S4g., S. Comeron, H. Salo, E. Laurikainen, J. H. Knapen, R. J. Buta, M. Herrera-Endoqui, J. Laine, Benne W. Holwerda, K. Sheth, M. W. Regan, J. L. Hinz, J. C. Munoz-Mateos, A. Gil De Paz, K. Menendez-Delmestre, M. Seibert, T. Mizusawa, T. Kim, S. Erroz-Ferrer, D. A. Gadotti, E. Athanassoula, A. Bosma, L. C. Ho

Benne Holwerda

Context. Resonance rings and pseudorings (here collectively called rings) are thought to be related to the gathering of material near dynamical resonances caused by non-axisymmetries in galaxy discs. This means that they are the result of secular evolution processes that redistribute material and angular momentum in discs. Studying them may give clues on the formation and growth of bars and other disc non-axisymmetries. Aims. Our aims are to produce a catalogue and an atlas of the rings detected in the Spitzer Survey of Stellar Structure in Galaxies (S4G) and to conduct a statistical study of the data in the catalogue. …

Xu_Pccp(2017)_Exp_H2o++Hd.Pdf, Yuntao Xu

Yuntao Xu

No abstract provided.

Synergistic Models Of Electron Emission And Transport Measurements Of Disordered Sio2, Jr Dennison, Jodie Corbridge Gillespie, Allen Andersen, Amberly Evans Jensen, Gregory Wilson, Justin Dekany, Alec M. Sim, Ryan Hoffmann

Jodie Corbridge Gillespie

A critical component in the prediction and mitigation of spacecraft charging issues is an accurate model of the charging, transport and electron emission properties of a broad array of materials used in the construction of spacecraft. The increased sensitivity, longer-duration missions, and ventures into more demanding environments only serve to heighten this need. One important way for the spacecraft charging community to address this issue is to expand the role of more fundamental materials physics. This includes the development of unifying theoretical models of the charge transport equations based on the creation, distribution, and occupancy of defect densities of states. …

Measurement Of The Temperature Dependence Of Radiation Induced Conductivity In Polymeric Dielectrics, Jodie Corbridge Gillespie

Jodie Corbridge Gillespie

This study measures Radiation Induced Conductivity (RIC) in five insulating polymeric materials over temperatures ranging from ~110 K to ~350 K: polyimide (PI or Kapton HNTM and Kapton ETM), polytetraflouroethylene (PTFE or TeflonTM), ethylene-tetraflouroethylene (ETFE or TefzelTM), and Low Density Polyethylene (LDPE). RIC occurs when incident ionizing radiation deposits energy and excites electrons into the conduction band of insulators. Conductivity was measured when a voltage was applied across vacuum-baked, thin film polymer samples in a parallel plate geometry. RIC was calculated as the difference in sample conductivity under no incident radiation and under an incident ~4 MeV electron beam at …

Convenient Synthesis Of 1,3-Dithiolane-2-Thiones: Cyclic Trithiocarbonates As Conformational Locks, Irina A. Dotsenko, Qinliang Zhao, Andreas H. Franz, Patrick Batoon, Nataliya M. Samoshina, Vyacheslav V. Samoshin

Andreas H. Franz

A series of novel 1,3-dithiolane-2-thiones, or cyclic trithiocarbonates, has been prepared by a new simple procedure: a treatment of the corresponding epoxides with the commercially available potassium ethyl xanthogenate, KSC(S)OEt. The stereochemistry of the products was determined by 1 H NMR and in some cases by single-crystal X-ray data. Cyclohexane-based 1,3- dithiolane-2-thiones revealed a trans-fusion of the carbo- and hetero-cycles. The products obtained from the mono-substituted cyclohexene oxides demonstrated an axial position of the substituents. Thus the epoxide transformation into trithiocarbonate can be used as a method for locking cyclic compounds in unstable conformations.

Synthesis And Nmr-Characterization Of Three Quinamide-Based Disaccharide Mimetics With Unusual Cyclohexane Twist-Conformation, Thuy Trang M. Nguyen, Paul H. Gross, Andreas H. Franz

Andreas H. Franz

The synthesis of amide-linked disaccharide mimetics has been explored starting with carbohydrate-based amines and a protected quinic acid lactone. Benzyl-2-amino-4,6-Obenzylidene-2-deoxy-α/β-D-glucopyranose (12) and D-glucamine (14) were successfully coupled to give the corresponding quinamides (13 and 15), while the quinoylation of Oacetylated L-fucopyranosyl methylamine (7) failed. The latter was prepared from per-O-acetylL-fucopyranose via the improved multigram scale synthesis of the corresponding per-O-acetylL-fucopyranosyl cyanide (3). Compound 3 was subsequently hydrogenated to yield a mixture of compound 7 and the per-O-acetylated bis-(fucopyranosylmethyl) amine (5). The vicinal coupling constants in the NMR spectra of all quinamide products revealed considerable flexibility of the cyclohexane ring in …

Structure Assignment And H/D-Exchange Behavior Of Several Glycosylated Polyphenols, Andreas H. Franz, Ilona Serebnitskaya, Gurbir Gudial, Christopher Wallis

Andreas H. Franz

The NMR-structures of six polyphenols, resveratrol (1), (-)-epicatechin (2), pelargonidin chloride (3), cyanidin chloride (4), cyanin chloride (5), and keracyanin chloride (6), were fully assigned. For the glycosylated polyphenols 5 and 6, the three-dimensional solution structure and long-range 1 H- 13C-coupling constants across the glycosidic bond were measured. Satisfactory fit to standard Karplus-equations was achieved for glycosides directly attached to the aromatic core in cyanin chloride. Molecular dynamics simulation data in vacuum at the AM1-level of theory were shown to approximate the NMR-solution data reasonably well. Selective HCl-catalyzed H/D-exchange was observed for aromatic protons H6 and H8 in flavonoid structures …

Syntheses Of Small Cluster Oligosaccharide Mimetics, Andreas H. Franz, Paul H. Gross, Vyacheslav V. Samoshin

Andreas H. Franz

We designed multiple Small Cluster Oligosaccharide Mimetics (SCOMs) - potential glycosidase inhibitors - to be metabolically stable and small enough to enter cells or bacteria. Therefore, minimal scaffolds (urea, amide, ammonia) or simply non-glycosidic linkages of carbohydrate structures were central to our synthetic strategy, including: (a) coupling of several natural carbohydrate precursors; (b) total syntheses of aminomethyl tetrahydropyrans and their chiral amides with quinic acid; (c) glycopyranosyl cyanide reduction to prepare crowded clusters on a urea scaffold; (d) total syntheses via cycloadditions leading to amide-linked C-glycosides; (e) reduction of nitromethyl C-glycosides; and (f) a synthesis of hydroxylated 1,2- cyclohexanedicarboxylic acids.

Solution Conformations Of Three Small Cluster Oligosaccharide Mimetics (Scom) From D-Glucosamine, D-Altrosamine, And (-)-Quinic Acid, Q. L. Nguyen, L. Olmstead, S. Bains, Andreas H. Franz

Andreas H. Franz

Three small cluster oligosaccharide mimetics were synthesized, and their CDCl3 solution conformations were determined with NMR experiments. In this paper, we confirmed conformational similarities in rings A and B in all three compounds, and we provide the overall solution geometries. In all cases, an unusual cyclohexane twist-boat conformation with longrange 4 J-(W)-coupling was observed. The origin of the bias towards the twist-boat was attributed primarily to the fused ring system between the cyclohexane ring and the dioxacyclopentane (acetal) including hydrogen bonding. Temperature-annealed molecular dynamics simulations complemented the NMR experiments and supported the overall assignment.

Progress Towards Terahertz Acoustic Phonon Generation In Doping Superlattices, Thomas E. Wilson

Thomas E. Wilson

Progress is described in experiments to generate coherent terahertz acoustic phonons in silicon doping superlattices by the resonant absorption of nanosecond-pulsed far-infrared laser radiation. Future experiments are proposed that would use the superlattice as a transducer in a terahertz cryogenic acoustic reflection microscope with sub-nanometer resolution.

Predictive Formula For Electron Range Over A Large Span Of Energies, Anne C. Starley, Gregory Wilson, Lisa Montierth Phillipps, Jr Dennison

Anne Starley

An empirical model developed by the Materials Research Group that predicts the approximate electron penetration depth—or range—of some common materials has been extended to predict the range for a broad assortment of other materials. The electron range of a material is the maximum distance electrons can travel through a material, before losing all of their incident kinetic energy. The original model used the Continuous-Slow-Down-Approximation for energy deposition in a material to develop a composite analytical formula which estimated the range from 10 MeV with an uncertainty of v, which describes the effective number of valence electrons. N_V was empirically …

Predictive Formula For Electron Range Over A Large Span Of Energy, Anne C. Starley, Jr Dennison

Anne Starley

A model developed by the Materials Research Group that calculates electron penetration range of some common materials, has been greatly expanded with the hope that such extensions will predict the range in other, perhaps, more interesting materials. Developments in this extended model aid in predicting the approximate penetration depth into diverse classes of materials for a broad range of energetic incident electrons (<10 eV to>10 MeV, with better than 20% accuracy). The penetration depth—or range—of a material describes the maximum distance electrons can travel through a material, before losing all of its incident kinetic energy. This model has started to predict …

Electron Penetration Range For Diverse Materials, Anne C. Starley, Lisa M. Phillipps, Jr Dennison

Anne Starley

The penetration range of energetic electrons into diverse materials can be modeled approximately with a simple fit. This fit is a function of a single parameter, Nv, which describes the effective number of valence electrons. Using the Continuous-Slow-Down-Approximation (CSDA) for energy deposition in a material, a composite analytical formula has been developed which estimates the range or maximum penetration depth of incident electrons for energies from10 MeV with an uncertainty of

Predictive Formula For Electron Range Over A Large Span Of Energies, Anne C. Starley, Gregory Wilson, Lisa Montierth Phillipps, Jr Dennison

Anne Starley

A model has been developed to predict the approximate penetration depth into diverse classes of materials for a broad range of energetic incident electrons (<10 eV to >10 MeV, with better than 20% accuracy). The penetration depth—or range—of a material describes the maximum distance electrons can travel through a material, before losing all of its incident kinetic energy. This model leads to a predictive formula that estimates the penetration depth for materials without the need for supporting data, but rather using only basic material properties and a single fitting parameter (Nv, described as the effective number of valence electrons). Nv …

When Cp(X) Is Domain Representable, William Fleissner, Lynne Yengulalp

Lynne Yengulalp

Let M be a metrizable group. Let G be a dense subgroup of M^X . If G is domain representable, then G = MX . The following corollaries answer open questions. If X is completely regular and C_p(X) is domain representable, then X is discrete. If X is zero-dimensional, T₂ , and C_p(X;D) is subcompact, then X is discrete.

Sphere Representations, Stacked Polytopes, And The Colin De Verdière Number Of A Graph, Lon Mitchell, Lynne Yengulalp

Lynne Yengulalp

We prove that a k-tree can be viewed as a subgraph of a special type of (k + 1)- tree that corresponds to a stacked polytope and that these “stacked” (k + 1)-trees admit representations by orthogonal spheres in R k+1. As a result, we derive lower bounds for Colin de Verdi`ere’s µ of complements of partial k-trees and prove that µ(G) + µ(G) > |G| − 2 for all chordal G.

Coarser Connected Topologies And Non-Normality Points, Lynne Yengulalp

Lynne Yengulalp

We investigate two topics, coarser connected topologies and non-normality points. The motivating question in the first topic is:

Question 0.0.1. When does a space have a coarser connected topology with a nice topological property? We will discuss some results when the property is Hausdorff and prove that if X is a non-compact metric space that has weight at least c, then it has a coarser connected metrizable topology. The second topic is concerned with the following question:

Question 0.0.2. When is a point y ∈ β X\X a non-normality point of β X\X? We will discuss the question in the …

Non-Normality Points Of Β X\X, William Fleissner, Lynne Yengulalp

Lynne Yengulalp

We seek conditions implying that (β X\X) \ {y} is not normal. Our main theorem: Assume GCH and all uniform ultrafilters are regular. If X is a locally compact metrizable space without isolated points, then (β X\X) \ {y} is not normal for all y ∈ β X\X. In preparing to prove this theorem, we generalize the notions “uniform”, “regular”, and “good” from set ultrafilters to z-ultrafilters. We discuss non-normality points of the product of a discrete space and the real line. We topologically embed a nonstandard real line into the remainder of this product space.

Constrained Binary Classification Using Ensemble Learning: An Application To Cost-Efficient Targeted Prep Strategies, Wenjing Zheng, Laura Balzer, Mark J. Van Der Laan, Maya Petersen, Search Collaboration

Laura B. Balzer

Algorithms In Backtracking Search Behind Sat And Asp, Yuliya Lierler

Yuliya Lierler

No abstract provided.

Difference Of Two Weighted Composition Operators On Bergman Spaces, Soumyadip Acharyya, Zhijian Wu

Soumyadip Acharyya

Synthesis And Hydration Of Alite-Calcium Sulfoaluminate Cement, Natechanok Chitvoranund, Frank Winnefeld, Craig Hargis, Barbara Lothenbach

Craig Hargis