Physical Sciences and Mathematics Commons^™

The Entangled Triplet Pair State In Acene And Heteroacene Materials, Chaw Keong Yong, Andrew J. Musser, Sam L. Bayliss, Steven Lukman, Hiroyuki Tamura, Olga Bubnova, Rawad Hallani, Aurélie Meneau, Roland Resel, Munetaka Maruyama, Shu Hotta, Laura M. Herz, David Beljonne, John E. Anthony, Jenny Clark, Henning Sirringhaus

Chemistry Faculty Publications

Entanglement of states is one of the most surprising and counter-intuitive consequences of quantum mechanics, with potent applications in cryptography and computing. In organic materials, one particularly significant manifestation is the spin-entangled triplet-pair state, which mediates the spin-conserving fission of one spin-0 singlet exciton into two spin-1 triplet excitons. Despite long theoretical and experimental exploration, the nature of the triplet-pair state and inter-triplet interactions have proved elusive. Here we use a range of organic semiconductors that undergo singlet exciton fission to reveal the photophysical properties of entangled triplet-pair states. We find that the triplet pair is bound with respect to …

One More Hard Three-Loop Correction To Parapositronium Energy Levels, Michael I. Eides, Valery A. Shelyuto

Physics and Astronomy Faculty Publications

A hard three-loop correction to parapositronium energy levels of order mα⁷ is calculated. This nonlogarithmic contribution is due to the insertions of one-loop photon propagator in the fermion lines in the diagrams with virtual two-photon annihilation. We obtained ΔE = 0.03297(2)(mα⁷ / π³) for this energy shift.

Direct Virtual Photon Production In Au+Au Collisions At √SNn = 200 Gev, L. Adamczyk, James K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, N. N. Ajitanand, I. Alekseev, D. M. Anderson, R. Aoyama, A. Aparin, D. Arkhipkin, E. C. Aschenauer, M. U. Ashraf, A. Attri, G. S. Averichev, X. Bai, V. Bairathi, A. Behera, R. Bellwied, A. Bhasin, A. K. Bhati, P. Bhattarai, J. Bielcik, J. Bielcikova, L. C. Bland, I. G. Bordyuzhin, J. Bouchet, J. D. Brandenburg, A. V. Brandin, D. Brown, Renee H. Fatemi, Suvarna Ramachandran

Physics and Astronomy Faculty Publications

We report the direct virtual photon invariant yields in the transverse momentum ranges 1 < p_T < 3 GeV/c and 5 < p_T < 10 GeV/c at mid-rapidity derived from the dielectron invariant mass continuum region 0.10 < M_ee < 0.28 GeV/c² for 0–80% minimum-bias Au+Au collisions at √s_NN = 200 GeV. A clear excess in the invariant yield compared to the nuclear overlap function T_AA scaled p + p reference is observed in the p_T range 1 < p_T < 3 GeV/c. For p_T > 6 GeV/c the production follows T_AA scaling. Model calculations with contributions from thermal radiation …

Mechanism-Informed Refinement Reveals Altered Substrate-Binding Mode For Catalytically Competent Nitroreductase, Warintra Pitsawong, Chad A. Haynes, Ronald L. Koder, David W. Rodgers, Anne-Frances Miller

Chemistry Faculty Publications

Nitroreductase from Enterobacter cloacae (NR) reduces diverse nitroaromatics including herbicides, explosives and prodrugs, and holds promise for bioremediation, prodrug activation and enzyme-assisted synthesis. We solved crystal structures of NR complexes with bound substrate or analog for each of its two half-reactions. We complemented these with kinetic isotope effect (KIE) measurements elucidating H-transfer steps essential to each half-reaction. KIEs indicate hydride transfer from NADH to the flavin consistent with our structure of NR with the NADH analog nicotinic acid adenine dinucleotide (NAAD). The KIE on reduction of p-nitrobenzoic acid (p-NBA) also indicates hydride transfer, and requires revision of …

Multiple Attributes Decision Fusion For Wireless Sensor Networks Based On Intuitionistic Fuzzy Set, Zhenjiang Zhang, Ziqi Hao, Sherali Zeadally, Jing Zhang, Bowen Han, Han-Chieh Chao

Information Science Faculty Publications

Decision fusion is an important issue in wireless sensor networks (WSN), and intuitionistic fuzzy set (IFS) is a novel method for dealing with uncertain data. We propose a multi-attribute decision fusion model based on IFS, which includes two aspects: data distribution-based IFS construction algorithm (DDBIFCA) and the category similarity weight-based TOPSIS intuitionistic fuzzy decision algorithm (CSWBT-IFS). The DDBIFCA is an IFS construction algorithm that transforms the original attribute values into intuitionistic fuzzy measures, and the CSWBT-IFS is an intuitionistic fuzzy aggregation algorithm improved by the traditional TOPSIS algorithm, which combines intuitionistic fuzzy values of different attributes and obtains a final …

Blow-Up Algebras, Determinantal Ideals, And Dedekind-Mertens-Like Formulas, Alberto Corso, Uwe Nagel, Sonja Petrović, Cornelia Yuen

Mathematics Faculty Publications

We investigate Rees algebras and special fiber rings obtained by blowing up specialized Ferrers ideals. This class of monomial ideals includes strongly stable monomial ideals generated in degree two and edge ideals of prominent classes of graphs. We identify the equations of these blow-up algebras. They generate determinantal ideals associated to subregions of a generic symmetric matrix, which may have holes. Exhibiting Gröbner bases for these ideals and using methods from Gorenstein liaison theory, we show that these determinantal rings are normal Cohen–Macaulay domains that are Koszul, that the initial ideals correspond to vertex decomposable simplicial complexes, and we determine …

A Phase Iii, Randomized, Multi-Center, Double Blind, Placebo Controlled Study Of Safety And Efficacy Of Lofexidine For Relief Of Symptoms In Individuals Undergoing Inpatient Opioid Withdrawal, Charles W. Gorodetzky, Sharon L. Walsh, Peter R. Martin, Andrew J. Saxon, Kristen L. Gullo, Kousick Biswas

Center on Drug and Alcohol Research Faculty Publications

Background: Lofexidine is an alpha-2-adrenergic receptor agonist approved in the United Kingdom (UK) for the treatment of opioid withdrawal symptoms. Lofexidine has demonstrated better efficacy than placebo for reducing opioid withdrawal symptoms in patients undergoing opioid withdrawal with less reported hypotension than clonidine.

Methods: Designed as an FDA registration trial, this 8-day, randomized, double-blind, placebo-controlled, parallel-group study in 264 patients dependent on short-acting opioids evaluated the efficacy of lofexidine hydrochloride in reducing withdrawal symptoms in patients undergoing opioid withdrawal. The primary efficacy measures were SOWS-Gossop on Day 3 and time-to-dropout. Secondary endpoints included the proportion of participants who were completers; …

Nonmeteorological Influences On Severe Thunderstorm Warning Issuance: A Geographically Weighted Regression-Based Analysis Of County Warning Area Boundaries, Land Cover, And Demographic Variables, Megan L. White, J. Anthony Stallins

Geography Faculty Publications

Studies have shown that the spatial distribution of severe thunderstorm warnings demonstrates variation beyond what can be attributed to weather and climate alone. Investigating spatial patterns of these variations can provide insight into nonmeteorological factors that might lead forecasters to issue warnings. Geographically weighted regression was performed on a set of demographic and land cover descriptors to ascertain their relationships with National Weather Service (NWS) severe thunderstorm warning polygons issued by 36 NWS forecast offices in the central and southeastern United States from 2008 to 2015. County warning area (CWA) boundaries and cities were predominant sources of variability in warning …

Solvent Degradation And Emissions From A 0.7mwe Pilot Co2 Capture System With Two-Stage Stripping, Jesse Thompson, Heather Nikolic, Megan Combs, Saloni Bhatnagar, Jonathan Pelgen, Keemia Abad, Kunlei Liu

Center for Applied Energy Research Faculty and Staff Publications

The UKy-CAER team successfully tested an advanced 0.7 MWe post-combustion CO₂ capture system on a coal-fired power plant using a heat integration process combined with two-stage stripping to enhance the CO₂ absorber performance. One of the unique feature of the UKy-CAER integrated process is a two-stage stripping unit for solvent regeneration. The secondary stripper is empowered by the heat rejection from a conventional steam-heated (primary) stripper. The secondary stripper outlet stream at the commercial scale can be used as boiler secondary combustion air, consequently enriching the flue gas with CO₂, resulting in less energy penalty required …

Mining Non-Lattice Subgraphs For Detecting Missing Hierarchical Relations And Concepts In Snomed Ct, Licong Cui, Wei Zhu, Shiqiang Tao, James T. Case, Olivier Bodenreider, Guo-Qiang Zhang

Computer Science Faculty Publications

Objective: Quality assurance of large ontological systems such as SNOMED CT is an indispensable part of the terminology management lifecycle. We introduce a hybrid structural-lexical method for scalable and systematic discovery of missing hierarchical relations and concepts in SNOMED CT.

Material and Methods: All non-lattice subgraphs (the structural part) in SNOMED CT are exhaustively extracted using a scalable MapReduce algorithm. Four lexical patterns (the lexical part) are identified among the extracted non-lattice subgraphs. Non-lattice subgraphs exhibiting such lexical patterns are often indicative of missing hierarchical relations or concepts. Each lexical pattern is associated with a potential specific type of error. …

Conservation Farming And Changing Climate: More Beneficial Than Conventional Methods For Degraded Ugandan Soils, Drake N. Mubiru, Jalia Namakula, James Lwasa, Godfrey A. Otim, Joselyn Kashagama, Milly Nakafeero, William Nanyeenya, Mark S. Coyne

Plant and Soil Sciences Faculty Publications

The extent of land affected by degradation in Uganda ranges from 20% in relatively flat and vegetation-covered areas to 90% in the eastern and southwestern highlands. Land degradation has adversely affected smallholder agro-ecosystems including direct damage and loss of critical ecosystem services such as agricultural land/soil and biodiversity. This study evaluated the extent of bare grounds in Nakasongola, one of the districts in the Cattle Corridor of Uganda and the yield responses of maize (Zea mays) and common bean (Phaseolus vulgaris L.) to different tillage methods in the district. Bare ground was determined by a supervised multi-band …

Ionic Thermoelectric Paper, Fei Jiao, Ali Naderi, Dan Zhao, Joshua Schlueter, Maryam Shahi, Jonas Sundström, Hjalmar Granberg, Jesper Edberg, Ujwala Ail, Joseph W. Brill, Tom Lindström, Magnus Berggren, Xavier Crispin

Physics and Astronomy Faculty Publications

Ionic thermoelectric materials, for example, polyelectrolytes such as polystyrene sulfonate sodium (PSSNa), constitute a new class of materials which are attracting interest because of their large Seebeck coefficient and the possibility that they could be used in ionic thermoelectric SCs (ITESCs) and field effect transistors. However, pure polyelectrolyte membranes are not robust or flexible. In this paper, the preparation of ionic thermoelectric paper using a simple, scalable and cost-effective method is described. After a composite was fabricated with nanofibrillated cellulose (NFC), the resulting NFC–PSSNa paper is flexible and mechanically robust, which is desirable if it is to be used in …

Sloan Digital Sky Survey Iv: Mapping The Milky Way, Nearby Galaxies, And The Distant Universe, Michael R. Blanton, Matthew A. Bershady, Bela Abolfathi, Franco D. Albareti, Carlos Allende Prieto, Andres Almeida, Javier Alonso-García, Friedrich Anders, Scott F. Anderson, Brett Andrews, Erik Aquino-Ortíz, Alfonso Aragón-Salamanca, Maria Argudo-Fernández, Eric Armengaud, Eric Aubourg, Vladimir Avila-Reese, Carles Badenes, Stephen Bailey, Kathleen A. Barger, Jorge Barrera-Ballesteros, Curtis Bartosz, Dominic Bates, Falk Baumgarten, Julian Bautista, Rachael Beaton, Francesco Belfiore, Chad F. Bender, Andreas A. Berlind, Mariangela Bernardi, Florian Beutler, Renbin Yan, Daniel Lazarz, Kai Zhang

Physics and Astronomy Faculty Publications

We describe the Sloan Digital Sky Survey IV (SDSS-IV), a project encompassing three major spectroscopic programs. The Apache Point Observatory Galactic Evolution Experiment 2 (APOGEE-2) is observing hundreds of thousands of Milky Way stars at high resolution and high signal-to-noise ratios in the near-infrared. The Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey is obtaining spatially resolved spectroscopy for thousands of nearby galaxies (median z ~ 0.03). The extended Baryon Oscillation Spectroscopic Survey (eBOSS) is mapping the galaxy, quasar, and neutral gas distributions between z ~ 0.6 and 3.5 to constrain cosmology using baryon acoustic oscillations, redshift space distortions, …

A Microrna Signature Of Response To Erlotinib Is Descriptive Of Tgfβ Behaviour In Nsclc, Madeline J. Krentz Gober, James P. Collard, Katherine L. Thompson, Esther P. Black

Pharmaceutical Sciences Faculty Publications

Our previous work identified a 13-gene miRNA signature predictive of response to the epidermal growth factor receptor (EGFR) inhibitor, erlotinib, in Non-Small Cell Lung Cancer cell lines. Bioinformatic analysis of the signature showed a functional convergence on TGFβ canonical signalling. We hypothesized that TGFβ signalling controls expression of the miRNA genes comprising an erlotinib response signature in NSCLC. Western analysis revealed that TGFβ signalling via Smad2/3/4 occurred differently between erlotinib-resistant A549 and erlotinib- sensitive PC9 cells. We showed that TGFβ induced an interaction between Smad4 and putative Smad Binding Elements in PC9. However, qRT-PCR analysis showed that endogenous miR-140/141/200c expression …

Seedling Tolerance To Cotyledon Removal Varies With Seed Size: A Case Of Five Legume Species, Xiao Wen Hu, Rui Zhang, Yan Pei Wu, Carol C. Baskin

Biology Faculty Publications

It is generally accepted that seedlings from large seeds are more tolerant to defoliation than those from small seeds due to the additional metabolic reserves present in the large seeds. However, information on the effects of amount of seed reserves (cotyledon removal) from seedlings resulting from large vs. small seeds on seedling growth and long-term survival in the field is limited. Five legume species with different sizes of seeds were sown in the field and none, one, or both cotyledons removed 7 days after seedling emergence. Seedling biomass, relative growth rate (RGR) and survival were determined at different time. Cotyledon …

Strange And Charm Quark Spins From The Anomalous Ward Identity, Ming Gong, Yi-Bo Yang, Jian Liang, Andrei Alexandru, Terrence Draper, Keh-Fei Liu

Physics and Astronomy Faculty Publications

We present a calculation of the strange and charm quark contributions to the nucleon spin from the anomalous Ward identity (AWI). This is performed with overlap valence quarks on 2 + 1-flavor domain-wall fermion gauge configurations on a 24³ × 64 lattice with lattice spacing a⁻¹ = 1.73  GeV and the light sea mass at m_π = 330  MeV. To satisfy the AWI, the overlap fermion for the pseudoscalar density and the overlap Dirac operator for the topological density, which do not have multiplicative renormalization, are used to normalize the form factor of the local axial-vector current …

Divergence In Life History Traits Between Two Populations Of A Seed-Dimorphic Halophyte In Response To Soil Salinity, Fan Yang, Jerry M. Baskin, Carol C. Baskin, Xuejun Yang, Dechang Cao, Zhenying Huang

Biology Faculty Publications

Production of heteromorphic seeds is common in halophytes growing in arid environments with strong spatial and temporal heterogeneity. However, evidence for geographic variation (reflecting local adaptation) is almost nonexistent. Our primary aims were to compare the life history traits of two desert populations of this halophytic summer annual Suaeda corniculata subsp. mongolica and to investigate the phenotypic response of its plant and heteromorphic seeds to different levels of salt stress. Dimorphic seeds (F₁) of the halophyte S. corniculata collected from two distant populations (F₀) that differ in soil salinity were grown in a common environment under …

Treatment Pathway Of Bone Sarcoma In Children, Adolescents, And Young Adults, Damon R. Reed, Masanori Hayashi, Lars M. Wagner, Odion Binitie, Diana A. Steppan, Andrew S. Brohl, Eric T. Shinohara, Julia A. Bridge, David M. Loeb, Scott C. Borinstein, Michael S. Isakoff

Pediatrics Faculty Publications

When pediatric, adolescent, and young adult patients present with a bone sarcoma, treatment decisions, especially after relapse, are complex and require a multidisciplinary approach. This review presents scenarios commonly encountered in the therapy of bone sarcomas with the goal of objectively presenting a consensus, multidisciplinary management approach. Little variation was found in the authors' group with respect to local control or systemic therapy. Clinical trials were universally prioritized in all settings. Decisions regarding relapse therapies in the absence of a clinical trial had very minor variations initially, but a consensus was reached after a literature review and discussion. This review …

Optical Signatures Of Spin-Orbit Exciton In Bandwidth-Controlled Sr2Iro4 Epitaxial Films Via High-Concentration Ca And Ba Doping, Maryam Souri, B. H. Kim, John H. Gruenewald, John G. Connell, J. Thompson, J. Nichols, Jsaminka Terzic, B. I. Min, Gang Cao, Joseph W. Brill, Sung S. Ambrose Seo

Physics and Astronomy Faculty Publications

We have investigated the electronic and optical properties of (Sr_1−xCa_x)₂IrO₄ (x = 0–0.375) and (Sr_1−yBa_y)₂IrO₄ (y = 0–0.375) epitaxial thin films, in which the bandwidth is systematically tuned via chemical substitutions of Sr ions by Ca and Ba. Transport measurements indicate that the thin-film series exhibits insulating behavior, similar to the J_eff = 1/2 spin-orbit Mott insulator Sr₂IrO₄. As the average A-site ionic radius increases from (Sr_1−xCa_x)₂IrO₄ to (Sr …

Thermodynamically-Consistent Semi-Classical ℓ-Changing Rates, R. J. R. Williams, Francisco Guzmán, N. R. Badnell, P. A. M. Van Hoof, Marios Chatzikos, Gary J. Ferland

Physics and Astronomy Faculty Publications

We compare the results of the semi-classical (SC) and quantum-mechanical (QM) formalisms for angular-momentum changing transitions in Rydberg atom collisions given in a series of papers by Vrinceanu et al, most recently Vrinceanu et al (2012 Astrophys. J. 747 56), with those of the SC formalism using a modified Monte Carlo realization. We find that this revised SC formalism agrees well with the QM results. This provides further evidence that the rates derived from the QM treatment are appropriate to be used when modeling recombination through Rydberg cascades, an important process in understanding the state of material in …

2d And 3d Pointing Device Based On A Passive Lights Detection Operation Method Using One Camera, Fuhua Cheng

Computer Science Faculty Patents

Systems for surface-free pointing and/or command input include a computing device operably linked to an imaging device. The imaging device can be any suitable video recording device including a conventional webcam. At least one pointing/input device is provided including first, second, and third sets of actuable light sources, wherein at least the first and second sets emit differently colored light. The imaging device captures one or more sequential image frames each including a view of a scene including the activated light sources. One or more computer program products calculate a two-dimensional or three-dimensional position and/or a motion and/or an orientation …

Lifetime Measurements Of Low-Spin Negative-Parity Levels In 160Gd, S. R. Lesher, C. Casarella, L. M. Robledo, Benjamin P. Crider, R. Ikeyama, I. R. Marsh, Marcus T. Mcellistrem, Erin E. Peters, Francisco M. Prados-Estévez, M. K. Smith, Z. R. Tully, J. R. Vanhoy, Steven W. Yates

Physics and Astronomy Faculty Publications

¹⁶⁰Gd(n,n′γ) experiments were performed with accelerator-produced monoenergetic neutrons. Excitation functions at neutron energies from 1.5 to 2.8 MeV aided in the placement of γ rays in the level scheme and angular distributions at three neutron energies resulted in the determination of 28 excited-level lifetimes or limits in ¹⁶⁰Gd, including the lifetimes of several negative-parity levels attributed to octupole vibrations.

Investigating Security For Ubiquitous Sensor Networks, Alfredo J. Perez, Sherali Zeadally, Nafaa Jabeur

Information Science Faculty Publications

The availability of powerful and sensor-enabled mobile and Internet-connected devices have enabled the advent of the ubiquitous sensor network paradigm which is providing various types of solutions to the community and the individual user in various sectors including environmental monitoring, entertainment, transportation, security, and healthcare. We explore and compare the features of wireless sensor networks and ubiquitous sensor networks and based on the differences between these two types of systems, we classify the security-related challenges of ubiquitous sensor networks. We identify and discuss solutions available to address these challenges. Finally, we briefly discuss open challenges that need to be addressed …

Institutional Research And Advanced Analytics, Mary Kathryn Starkey, Shelby Albers

Research Data and Scholarly Communications Committee Workshops

Tableau empowers everyone to see and understand their data. The Institutional Research & Advanced Analytics (IRAA) team will deliver an engaging one-hour demonstration that covers the ins and outs of Tableau Desktop and Tableau Server. We will also show you University of Kentucky data that is currently available to you, as well as where to find and how to access said data.

The presentation slides are available by clicking the Download button on the right. The video and audio files of this workshop are listed as additional files below and are available for download.

Neutron Scattering Cross Section Measurements For 56Fe, Anthony Paul D. Ramirez, J. Vanhoy, S. F. Hicks, Marcus T. Mcellistrem, Erin E. Peters, Sharmistha Mukhopadhyay, T. D. Harrison, T. J. Howard, D. T. Jackson, P. D. Lenzen, T. D. Nguyen, R. L. Pecha, B. G. Rice, B. K. Thompson, Steven W. Yates

Chemistry Faculty Publications

Elastic and inelastic differential cross sections for neutron scattering from ⁵⁶Fe have been measured for several incident energies from 1.30 to 7.96 MeV at the University of Kentucky Accelerator Laboratory. Scattered neutrons were detected using a C₆D₆ liquid scintillation detector using pulse-shape discrimination and time-of-flight techniques. The deduced cross sections have been compared with previously reported data, predictions from evaluation databases ENDF, JENDL, and JEFF, and theoretical calculations performed using different optical model potentials using the TALYS and EMPIRE nuclear reaction codes. The coupled-channel calculations based on the vibrational and soft-rotor models are found to describe …

Towards A Better Understanding Of On And Off Target Effects Of The Lymphocyte-Specific Kinase Lck For The Development Of Novel And Safer Pharmaceuticals, Xiaofei Zhang, Amir Kucharski, Wibe A. De Jong, Sally R. Ellingson

Markey Cancer Center Faculty Publications

In this work we have developed a multi-tiered computational platform to study protein-drug interactions. At the beginning of the workflow more efficient and less accurate methods are used to enable large libraries of proteins in many conformations and massive chemical libraries to be screened. At each subsequent step in the workflow a subset of input data is investigated with increased accuracy and more computationally expensive methods. We demonstrate the developed workflow with the investigation of the lymphocyte-specific kinase LCK, which is implicated as a drug target in many cancers and also known to have toxic effects when unintentionally targeted. Several …

Crystal Structure Of 4,4′-Bis­­[3-(Piperidin-1-Yl)Prop-1-Yn-1-Yl]-1,1′-Biphen­Yl, Anqi Walbaum, E. Kim Fifer, Sean R. Parkin, Peter A. Crooks

Chemistry Faculty Publications

The title compound, C₂₈H₃₂N₂, (I), is one of a second generation of compounds designed and synthesized based on a very potent and selective α9α10 nicotinic acetyl­choline receptor antagonist ZZ161C {1,1′-[[1,1′-biphen­yl]-4,4′-diylbis(prop-2-yne-3,1-di­yl)]bis­(3,4-di­methyl­pyridin-1-ium) bromide}, which has shown analgesic effects in a chemotherapy-induced neuropathy animal model. Compound (I) was synthesized by the reaction of 4,4′-bis­(3-bromo­prop-1-yn-1-yl)-1,1′-biphenyl with piperidine at room temperature in aceto­nitrile. The single-crystal used for X-ray analysis was obtained by dissolving (I) in a mixture of di­chloro­methane and methanol, followed by slow evaporation of the solvent. In the crystal of (I), the biphenyl moiety has a twisted …

Global Land Carbon Sink Response To Temperature And Precipitation Varies With Enso Phase, Yuanyuan Fang, Anna M. Michalak, Christopher R. Schwalm, Deborah N. Huntzinger, Joseph A. Berry, Philippe Ciais, Shilong Piao, Benjamin Poulter, Joshua B. Fisher, Robert B. Cook, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul Jain, Huimin Lei, Chaoqun Lu, Jiafu Mao, Nicholas C. Parazoo, Shushi Peng, Daniel M. Ricciuto, Xiaoying Shi, Bo Tao, Hanqin Tian, Weile Wang, Yaxing Wei, Jia Yang

Plant and Soil Sciences Faculty Publications

Climate variability associated with the El Niño-Southern Oscillation (ENSO) and its consequent impacts on land carbon sink interannual variability have been used as a basis for investigating carbon cycle responses to climate variability more broadly, and to inform the sensitivity of the tropical carbon budget to climate change. Past studies have presented opposing views about whether temperature or precipitation is the primary factor driving the response of the land carbon sink to ENSO. Here, we show that the dominant driver varies with ENSO phase. Whereas tropical temperature explains sink dynamics following El Niño conditions (r TG,P = 0.59, p …

Noncanonical Alternative Polyadenylation Contributes To Gene Regulation In Response To Hypoxia, Laura De Lorenzo, Reed Sorenson, Julia Bailey-Serres, Arthur G. Hunt

Plant and Soil Sciences Faculty Publications

Stresses from various environmental challenges continually confront plants, and their responses are important for growth and survival. One molecular response to such challenges involves the alternative polyadenylation of mRNA. In plants, it is unclear how stress affects the production and fate of alternative mRNA isoforms. Using a genome-scale approach, we show that in Arabidopsis thaliana, hypoxia leads to increases in the number of mRNA isoforms with polyadenylated 3′ ends that map to 5′-untranslated regions (UTRs), introns, and protein-coding regions. RNAs with 3′ ends within protein-coding regions and introns were less stable than mRNAs that end at 3′-UTR poly(A) sites. …

Risk Of Incident Clinical Diagnosis Of Alzheimer's Disease-Type Dementia Attributable To Pathology-Confirmed Vascular Disease, Hiroko H. Dodge, Jian Zhu, Randy Woltjer, Peter T. Nelson, David A. Bennett, Nigel J. Cairns, David W. Fardo, Jeffrey A. Kaye, Deniz-Erten Lyons, Nora Mattek, Julie A. Schneider, Lisa C. Silbert, Chengjie Xiong, Lei Yu, Frederick A. Schmitt, Richard J. Kryscio, Erin L. Abner, Smart Data Consortium

Sanders-Brown Center on Aging Faculty Publications

INTRODUCTION: The presence of cerebrovascular pathology may increase the risk of clinical diagnosis of Alzheimer's disease (AD).

METHODS: We examined excess risk of incident clinical diagnosis of AD (probable and possible AD) posed by the presence of lacunes and large infarcts beyond AD pathology using data from the Statistical Modeling of Aging and Risk of Transition study, a consortium of longitudinal cohort studies with more than 2000 autopsies. We created six mutually exclusive pathology patterns combining three levels of AD pathology (low, moderate, or high AD pathology) and two levels of vascular pathology (without lacunes and large infarcts or with …