Physical Sciences and Mathematics Commons^™

Blood Parasites Of Fish Of The Baikal Basin, T. R. Khamnueva, Darima R. Baldanova

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Eight species of trypanosomes were found in nine species of fish in the Lake Baikal: Trypanosoma percae, T. amurensis, T. schulmani, T. dogieli, T. magna, T. sp.1, T. sp.2. Five species of trypanoplasms were detected in the blood of 13 species of Baikal fish: Trypanoplasma lomakini, T. littoralis, T. cotti, T. zaikai, T. sp. In the erythrocytes of the sand sculpin, Leocottus kesslerii were observed haemogregarins.

The 3H/3He Groundwater Age-Dating Method And Applications, Troy E. Gilmore, Mikaela L. Cherry, Didier Gastmans, Douglas Kip Solomon, Eric Christopher Humphrey

School of Natural Resources: Faculty Publications

Groundwater age-dating is an important tool for quantifying and managing water resources. Groundwater age is the elapsed time between recharge (at the land surface or water table) and the time when groundwater is sampled. If groundwater is sampled at the point of discharge from an aquifer, then the age represents the groundwater transit time. Groundwater that has recharged in recent decades is considered young groundwater. In many areas, the quality and quantity of young groundwater has been impacted by human activities and groundwater age-dating is useful for quantifying current and historical water and contaminant fluxes into and through aquifers. This …

Our Past Creates Our Present: A Brief Overview Of Racism And Colonialism In Western Paleontology, Pedro M. Monarrez, Joshua B. Zimmt, Annaka M. Clement, William Gearty, John J. Jacisin Iii, Kelsey M. Jenkins, Kristopher Mm. Kusnerik, Carmi Milagros Thompson, Ashley W. Poust, Selina V. Robson, Judith A. Sclafani, Kelsey T. Stilson, Shamindri D. Tennakoon

School of Biological Sciences: Faculty Publications

As practitioners of a historical science, paleontologists and geoscientists are well versed in the idea that the ability to understand and to anticipate the future relies upon our collective knowledge of the past. Despite this understanding, the fundamental role that the history of paleontology and the geosciences plays in shaping the structure and culture of our disciplines is seldom recognized and therefore not acted upon sufficiently. Here, we present a brief review of the history of paleontology and geology in Western countries, with a particular focus on North America since the 1800s. Western paleontology and geology are intertwined with systematic …

Testing A Global Standard For Quantifying Species Recovery And Assessing Conservation Impact, Molly K. Grace, John Carroll, 201 Other Scholars

School of Biological Sciences: Faculty Publications

Recognizing the imperative to evaluate species recovery and conservation impact, in 2012 the International Union for Conservation of Nature (IUCN) called for development of a “Green List of Species” (now the IUCN Green Status of Species). A draft Green Status framework for assessing species’ progress toward recovery, published in 2018, proposed 2 separate but interlinked components: a standardized method (i.e., measurement against benchmarks of species’ viability, functionality, and preimpact distribution) to determine current species recovery status (herein species recovery score) and application of that method to estimate past and potential future impacts of conservation based on 4 metrics ( …

Reconstruction Of Ancient Microbial Genomes From The Human Gut, M. C. Wibowo, Z. Yang, M. Borry, A. Hubner, K. D. Huang, B. T. Tierney, S. Zimmerman, F. Barajas-Olmos, C. Contreras-Cubas, H. Garcia-Ortiz, A. Martinez-Hernandez, J. M. Luber, K. Reinhard Et Al.

School of Natural Resources: Faculty Publications

No abstract provided.

Challenges Of Brush Management Treatment Effectiveness In Southern Great Plains, United States, Rheinhardt Scholtz, Samuel D. Fuhlendorf, Daniel R. Uden, Brady W. Allred, Matthew O. Jones, David E. Naugle, Dirac Twidwell

School of Natural Resources: Faculty Publications

Woodland expansion is a global challenge documented under varying degrees of disturbance, climate, and land ownership patterns. In North American rangelands, mechanical and chemical brush management practices and prescribed fire are frequently promoted by agencies and used by private landowners to reduce woody plant cover. We assess the distribution of agency-supported cost sharing of brush management (2000−2017) in the southern Great Plains, United States, and evaluate the longevity of treatment application. We test the general expectation that the current brush management paradigm in the southern Great Plains reduces woody plants and conserves rangeland resources at broad scales. This study represents …

Baseflow Nitrate Dynamics Within Nested Watersheds Of An Agricultural Stream In Nebraska, Usa, Galen Richards, Troy E. Gilmore, Aaron R. Mittelstet, Tiffany Messer, Daniel D. Snow

Daugherty Water for Food Global Institute: Faculty Publications

There is a need to evaluate high surface nitrate concentrations across agricultural watersheds, both spatially and temporally, to increase understanding of source and timing of nitrogen loads in streams and rivers. Bazile Creek is a high-nitrate stream originating in the agriculturally intensive Bazile Groundwater Management Area of Eastern Nebraska, USA. It is a gaining stream that receives groundwater with high nitrate concentrations originating from nonpoint sources. The objective of this study was to determine spatial and temporal variability of baseflow nitrate concentrations in Bazile Creek and its tributaries and to relate this variability to watershed characteristics. Surface-water nitrate samples were …

Pesticide Occurrence And Persistence Entering Recreational Lakes In Watersheds Of Varying Land Uses, Jessica Satiroff, Tiffany Messer, Aaron R. Mittelstet, Daniel D. Snow

Nebraska Water Center: Faculty Publications

Currently little is known of newer pesticide classes and their occurrence and persistence in recreational lakes. Therefore, the objectives of this study were to (1) assess average pesticide concentrations and loadings entering recreational lakes in three mixed land use watersheds throughout the growing season, (2) evaluate pesticide persistence longitudinally within the lakes, and (3) perform an ecotoxicity assessment. Six sampling campaigns were conducted at three lakes from April through October 2018 to measure the occurrence and persistence during pre, middle, and post growing season. Polar organic chemical integrative samplers (POCIS) were placed in streams near lake inlets and monthly samples …

Tweetdrought: A Deep-Learning Drought Impacts Recognizer Based On Twitter Data, Beichen Zhang, Frank Schilder, Kelly Helm Smith, Michael Hayes, Sherri Harms, Tsegaye Tadesse

Drought Mitigation Center: Faculty Publications

Acquiring a better understanding of drought impacts becomes increasingly vital under a warming climate. Traditional drought indices describe mainly biophysical variables and not impacts on social, economic, and environmental systems. We utilized natural language processing and bidirectional encoder representation from Transformers (BERT) based transfer learning to fine-tune the model on the data from the news-based Drought Impact Report (DIR) and then apply it to recognize seven types of drought impacts based on the filtered Twitter data from the United States. Our model achieved a satisfying macro-F1 score of 0.89 on the DIR test set. The model was then applied to …

A Model-Based Exploratory Study Of Sulfur Dioxide Dispersions From Concentrated Animal Feeding Operations In The Southeastern United States, Jesse Winchester, Rezaul Mahmood, William Rodgers, Philip J. Silva, Nanh Lovanh, Joshua D. Durkee, John Loughrin

High Plains Regional Climate Center: Personnel Publications

In the Southeastern U. S. there are Concentrated Animal Feeding Operations (CAFOs) that emit a variety of gases, including SO₂. Sulfur is emitted as reduced sulfur compounds and can react in the atmosphere to produce SO₂. It is expected that the concentra­tion and spread of SO₂ emissions from these sources would differ between wet and dry periods. In this research, SO₂ emissions from locations representing CAFOs and its dispersion over the south­eastern U.S. were simulated through sensitivity experiments using the Weather Research and Forecasting-Chemistry (WRF- Chem) model. Simulations were performed for dry periods and …

Experiential Learning In Soil Science: Evaluating Soil Quality In South Wollo, Ethiopia, Melissa Allen, Martha Mamo, Shimelis Beyene, Teshome Regassa, Gandura O. Abagandura, Solomon Abreha, Anthony James Mucia, Tsegaye Tadesse

Drought Mitigation Center: Faculty Publications

This study abroad program provided an opportunity to enhance the international experience and research skills of University of Nebraska-Lincoln (UNL) students within a multidisciplinary team’s research-education goal on improving food security in Ethiopia. The experiential study component of the project included preparatory sessions during the Fall 2015 Semester at the UNL followed by a four- to five-week fieldwork experience in Ethiopia. Teams from the UNL and an Ethiopian university participated in survey data collection and field soil evaluations from farms in the Gerado area of South Wollo, Ethiopia. Having students interact with farmers increased student self-confidence and enhanced their leadership …

Ranchers’ Use Of Drought Contingency Plans In Protective Action Decision Making, Tonya Haigh, Michael Hayes, Jolene Smyth, Linda Stalker Prokopy, Charles A. Francis, Mark Burbach

Drought Mitigation Center: Faculty Publications

Drought contingency planning is an increasingly common tool in the ranchers’ climate adaptation toolboxes, but its effect on drought response has not yet been evaluated. We use cognitive models of protective action decision making and planning to explore the effects of having a drought plan on the use of drought early warning information and drought response (and timing). Results of a cross-sectional, probability-based survey of livestock producers affected by a 2016 flash-drought are used to describe the characteristics of operations with drought plans and provide evidence of whether having a plan predicts drought information use and response. While larger operations …

Whose Ground Truth Is It? Harvesting Lessons From Missouri’S 2018 Bumper Crop Of Drought Observations, Kelly Helm Smith, Mark E. Burbach, Michael Hayes, Patrick Guinan, Andrew Tyre, Brian Fuchs, Tonya Haigh, Mark Svoboda

Drought Mitigation Center: Faculty Publications

Drought-related decision-making and policy should go beyond numeric hydrometeorological data to incorporate information on how drought affects people, livelihoods, and ecosystems. The effects of drought are nested within environmental and human systems, and relevant data may not exist in readily accessible form. For example, drought may reduce forage growth, compounded by both late-season freezes and management decisions. An effort to gather crowdsourced drought observations in Missouri in 2018 yielded a much higher number of observations than did previous related efforts. Here we examine 1) the interests, circumstances, history, and recruitment messaging that coincided to produce a high number of reports …

Temporal Coherent Control Of Resonant Two-Photon Double Ionization Of The Hydrogen Molecule Via Doubly Excited States, Jean Marcel Ngoko Djiokap, Anthony F. Starace

Anthony F. Starace Publications

We use time-delayed, counter-rotating, circularly polarized few-cycle attosecond nonoverlapping pulses to study the temporal coherent control of the resonant process of two-photon double ionization (TPDI) of hydrogen molecule via doubly excited states for pulse propagation direction along ˆk either parallel or perpendicular to the molecular axis ˆR. For ˆk ‖ ˆR and a pulse carrier frequency of 36 eV resonantly populating the Q₂ 1∏ ⁺ _u (1) doubly excited state as well as other 1∏ ⁺ _u doubly excited states, we find that the indirect ionization pathway through these doubly excited states changes the character of the kinematical vortex-shaped …

Predictive Maintenance Of Bearing Machinery Using Simulation- A Bibliometric Study, Karan Gulati Mr., Keshav Basandrai Mr., Shubham Tiwari Mr., Pooja Kamat Prof., Satish Kumar Dr.

Library Philosophy and Practice (e-journal)

Modelling is a way of constructing a virtual representation of software and hardware that involves a real-world device. We will discover the behaviour of the system if the software elements of this model are guided by mathematical relationships. For testing conditions that may be difficult to replicate with hardware prototypes alone, modelling and simulation are particularly useful, especially in the early phase of the design process when hardware might not be available. Model-based approach in MATLAB-Simulink can be useful for predictive maintenance of machines as it can reduce unplanned downtimes and maintenance costs when industrial equipment breaks. Through this bibliometric …

Research Data Curation And Management Bibliography, Charles W. Bailey Jr.

Copyright, Fair Use, Scholarly Communication, etc.

Preface

The Research Data Curation and Management Bibliography includes over 800 selected English-language articles and books that are useful in understanding the curation of digital research data in academic and other research institutions.

The "digital curation" concept is still evolving. In "Digital Curation and Trusted Repositories: Steps toward Success," Christopher A. Lee and Helen R. Tibbo define digital curation as follows:

Digital curation involves selection and appraisal by creators and archivists; evolving provision of intellectual access; redundant storage; data transformations; and, for some materials, a commitment to long-term preservation. Digital curation is stewardship that provides for the reproducibility and re-use …

2021 Nebraska Water Leaders Academy Final Report, Mark E. Burbach, Robert Matthew Joeckel, Brooke Mott, Gina S. Matkin

Conservation and Survey Division

Seventeen participants completed the 2021 Water Leaders Academy bringing the total number of graduates to 153 since the inception of the program in 2011. Assessments of participants’ transformational leadership skills, champion of innovation skills, water knowledge, engagement with water issues, civic capacity, entrepreneurial leadership behaviors, and boundary spanner abilities showed significant increases over the course of the year, according to both the participants and their raters. Feedback from the participants was highly positive and constructive. Academy planners are addressing participant concerns. Only minor changes are planned for the 2022 Academy curriculum. Results of the program assessment indicate that the curriculum …

The Nebraska Water Leaders Academy Graduates’ Influence On Community Capitals And Community Capacity, Dakota W. Staggs, Mark E. Burbach, Gina S. Matkin, Cheryl Burkhart-Kriesel

School of Natural Resources: Faculty Publications

An overarching goal of the Nebraska Water Leaders Academy is to prepare a diverse group of Nebraskans from across the state to impact change in their communities by working together to solve wicked water problems. With 136 graduates from across Nebraska there is potential for graduates to effect change and impact their communities’ capitals (i.e., Built, Financial, Political, Social, Human, Cultural, and Natural). This study explored the impact of Academy graduates on their communities’ capitals and community capacity to prepare for future challenges from the perspective of graduates and community members. Findings show that Academy graduates are impacting their communities …

A Spectral Adjustment For Spatial Confounding, Yawen Guan, Garritt L. Page, Brian J. Reich, Massimo Ventrucci, Shu Yang

Department of Statistics: Faculty Publications

Adjusting for an unmeasured confounder is generally an intractable problem, but in the spatial setting it may be possible under certain conditions. In this paper, we derive necessary conditions on the coherence between the treatment variable of interest and the unmeasured confounder that ensure the causal effect of the treatment is estimable. We specify our model and assumptions in the spectral domain to allow for different degrees of confounding at different spatial resolutions. The key assumption that ensures identifiability is that confounding present at global scales dissipates at local scales. We show that this assumption in the spectral domain is …

A Conceptual Model Evaluation Framework For Adaptive Governance And Adaptive Management In Large-Scale Restoration Programs, Chadwin Smith

School of Natural Resources: Dissertations, Theses, and Student Research

Adaptive management (AM) has become a kind of plastic phrase applied as a formulaic panacea for most major species recovery and ecosystem restoration efforts now underway across the United States. AM emerged as an application of the scientific method to resource management, closely tying management to science learning through experimental actions. The phrase “learning by doing” best captures the premise behind developing an experimental management approach that could be applied on the larger scale of a river system or ecosystem. In nearly five decades of application, however, examples of successful AM implementation at large scales are few and conflict remains …

Published Research Documents In Nuclear And High Energy Physics From 1996-2019: A Bibliometric Analysis Of Leading Countries In Comparison With India, Ishwar Dutt Sharma Dr

Library Philosophy and Practice (e-journal)

A bibliometric analysis of scientific research production of the top five most productive countries in comparison with India in nuclear and high energy physics is presented during the period 1996-2019 using Scopus-linked SCImago electronic database. To validate the present study, some selected bibliometric indicators such as published documents, their citations and citations per document has been studied. In total, 769180 research documents were published worldwide in journal, conference proceedings and in book series. United States (16.47%), Germany(8.64%), Japan (6.65%), China (6.41%) and Russian Federation (5.89%) were the top most productive countries rankwise, whereas India ranked 10^th with 21157 research …

Core Commitments For Field Trials Of Gene Drive Organisms, Kanya C. Long, Luke Alphey, George J. Annas, Cinnamon S. Bloss, Karl J. Campbell, Jackson Champer, Chun-Hong Chen, Amit Choudhary, George M. Church, James P. Collins, Kimberly L. Cooper, Jason A. Delborne, Owain R. Edwards, Claudia I. Emerson, Kevin Esvelt, Sam Weiss Evans, Robert M. Friedman, Valentino M. Gantz, Fred Gould, Sarah Hartley, Elizabeth Heitman, Janet Hemingway, Hirotaka Kanuka, Jennifer Kuzma, James V. Lavery, Yoosook Lee, Marce Lorenzen, Jeantine E. Lunshof, John M. Marshall, Philipp W. Messer, Craig Montell, Kenneth A. Oye, Megan J. Palmer, Philippos Aris Papathanos, Prasad N. Paradkar, Antoinette J. Piaggio, Jason L. Rasgon, Gordana Rašić, Larisa Rudenko, J. Royden Saah, Maxwell J. Scott, Jolene T. Sutton, Adam E, Vorsino, Omar S. Akbari

United States Department of Agriculture Wildlife Services: Staff Publications

We must ensure that trials are scientifically, politically, and socially robust, publicly accountable, and widely transparent.

Gene drive organisms (GDOs), whose genomes have been genetically engineered to spread a desired allele through a population, have the potential to transform the way societies address a wide range of daunting public health and environmental challenges. The development, testing, and release of GDOs, however, are complex and often controversial. A key challenge is to clarify the appropriate roles of developers and others actively engaged in work with GDOs in decision-making processes, and, in particular, how to establish partnerships with relevant authorities and other …

Decline Of Novel Ecosystems Used By Endangered Species: The Case Of Piping Plovers, Least Terns, And Aggregate Mines, Joel G. Jorgensen, Stephen J. Brenner, Lauren R. Greenwalt, Mark P. Vrtiska

School of Natural Resources: Faculty Publications

Sand and gravel mining creates novel ecosystems along the Platte, Loup, and Elkhorn rivers in Nebraska, USA. Piping plovers and least terns are state and/or federally threatened and endangered species, respectively, that nest and raise young at these sites and their derivatives. Despite hosting relatively large numbers of piping plovers and least terns for decades, an important question that has largely gone unaddressed is whether the industry that has produced these novel ecosystems is stable and will continue to produce habitat consistently in the future. We evaluated how the number, size, and spatial distribution of different site types hosting different …

Operationalizing Niche Construction Theory With Stone Tools, Radu Lovita, David R. Braun, Matthew J. Douglass, Simon J. Holdaway, Sam C. Lin, Deborah I. Olsezewski, Zeljko Rezek

School of Natural Resources: Faculty Publications

One of the greatest difficulties with evolutionary approaches in the study of stone tools (lithics) has been finding a mechanism for tying culture and biology in a way that preserves human agency and operates at scales that are visible in the archaeological record. The concept of niche construction, whereby organisms actively construct their environments and change the conditions for selection, could provide a solution to this problem. In this review, we evaluate the utility of niche construction theory (NCT) for stone tool archaeology. We apply NCT to lithics both as part of the “extended phenotype” and as residuals or precipitates …

Leveraging Image Analysis To Compute 3d Plant Phenotypes Based On Voxel-Grid Plant Reconstruction, Sruti Das Choudhury, Srikanth Maturu, Ashok Samal, Vincent Stoerger, Tala Awada

School of Natural Resources: Faculty Publications

High throughput image-based plant phenotyping facilitates the extraction of morphological and biophysical traits of a large number of plants non-invasively in a relatively short time. It facilitates the computation of advanced phenotypes by considering the plant as a single object (holistic phenotypes) or its components, i.e., leaves and the stem (component phenotypes). The architectural complexity of plants increases over time due to variations in self-occlusions and phyllotaxy, i.e., arrangements of leaves around the stem. One of the central challenges to computing phenotypes from 2-dimensional (2D) single view images of plants, especially at the advanced vegetative stage in presence of self-occluding …

The Local Stability Of A Modified Multi-Strain Sir Model For Emerging Viral Strains, Miguel Fudolig, Reka Howard

Department of Statistics: Faculty Publications

We study a novel multi-strain SIR epidemic model with selective immunity by vaccination. A newer strain is made to emerge in the population when a preexisting strain has reached equilbrium. We assume that this newer strain does not exhibit cross-immunity with the original strain, hence those who are vaccinated and recovered from the original strain become susceptible to the newer strain. Recent events involving the COVID-19 virus shows that it is possible for a viral strain to emerge from a population at a time when the influenza virus, a well-known virus with a vaccine readily available, is active in a …

Food System Resilience In Nigeria: Farmers Perspective, Azariah Lawal

School of Natural Resources: Dissertations, Theses, and Student Research

Disturbances are inherent in every socio-ecological system (SES). However, the spate and scope of upheavals in contemporary SES has increased dramatically in recent years. Agricultural systems are perhaps the most impacted when disasters occur because different aspects of agricultural production are directly affected. The burgeoning farmers-Fulani herdsmen conflict in West Africa is a manifestation of these challenges. When faced with events like these, contemporary food systems are faced with two options: collapse or transform. It is essential to have resilient agricultural systems because these systems lie at the nexus of resolving emerging global issues.

Nigeria is an important country in …

Building An Improved Drought Climatology Using Updated Drought Tools: A New Mexico Food-Energy-Water (Few) Systems Focus, Lindsay E. Johnson, Hatim M.E. Geli, Michael J. Hayes, Kelly Helm Smith

Drought Mitigation Center: Faculty Publications

Drought is a familiar climatic phenomenon in the United States Southwest, with complex human-environment interactions that extend beyond just the physical drought events. Due to continued climate variability and change, droughts are expected to become more frequent and/or severe in the future. Decision-makers are charged with mitigating and adapting to these more extreme conditions and to do that they need to understand the specific impacts drought has on regional and local scales, and how these impacts compare to historical conditions. Tremendous progress in drought monitoring strategies has occurred over the past several decades, with more tools providing greater spatial and …

A Novel Spatiotemporal Prediction Method Of Cumulative Covid-19 Cases, Junzhe Cai

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Prediction methods are important for many applications. In particular, an accurate prediction for the total number of cases for pandemics such as the Covid-19 pandemic could help medical preparedness by providing in time a sufficient supply of testing kits, hospital beds and medical personnel. This thesis experimentally compares the accuracy of ten prediction methods for the cumulative number of Covid-19 pandemic cases. These ten methods include two types of neural networks and extrapolation methods based on best fit linear, best fit quadratic, best fit cubic and Lagrange interpolation, as well as an extrapolation method from Revesz. We also consider the …

Suffix Tree, Minwise Hashing And Streaming Algorithms For Big Data Analysis In Bioinformatics, Sairam Behera

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

In this dissertation, we worked on several algorithmic problems in bioinformatics using mainly three approaches: (a) a streaming model, (b) sux-tree based indexing, and (c) minwise-hashing (minhash) and locality-sensitive hashing (LSH). The streaming models are useful for large data problems where a good approximation needs to be achieved with limited space usage. We developed an approximation algorithm (Kmer-Estimate) using the streaming approach to obtain a better estimation of the frequency of k-mer counts. A k-mer, a subsequence of length k, plays an important role in many bioinformatics analyses such as genome distance estimation. We also developed new methods that use …