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Full-Text Articles in Physical Sciences and Mathematics

Pressure Effect On An Ocean-Based Humidification-Dehumidification Desalination Process, Yingchen Yang Oct 2019

Pressure Effect On An Ocean-Based Humidification-Dehumidification Desalination Process, Yingchen Yang

Mechanical Engineering Faculty Publications and Presentations

A new humidification-dehumidification (HDH) desalination process is proposed and analyzed. Being ocean based, the process does not produce any brine. It is largely powered jointly by solar energy, wind energy, and various types of ocean energies in a nearly natural way. A vacuum pump is employed to drive the air circulation throughout the HDH process. It is the only unit that consumes electricity. The HDH process is analyzed under various conditions, including using a low pressure (as low as to 0.2 atm) for humidification and the ambient pressure for dehumidification, running the entire HDH process around a low pressure (as …


Multi‐Breather And High‐Order Rogue Waves For The Nonlinear Schrödinger Equation On The Elliptic Function Background, Bao-Feng Feng, Liming Ling, Daisuke A. Takahashi Oct 2019

Multi‐Breather And High‐Order Rogue Waves For The Nonlinear Schrödinger Equation On The Elliptic Function Background, Bao-Feng Feng, Liming Ling, Daisuke A. Takahashi

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

We construct the multi‐breather solutions of the focusing nonlinear Schrödinger equation (NLSE) on the background of elliptic functions by the Darboux transformation, and express them in terms of the determinant of theta functions. The dynamics of the breathers in the presence of various kinds of backgrounds such as dn, cn, and nontrivial phase‐modulating elliptic solutions are presented, and their behaviors dependent on the effect of backgrounds are elucidated. We also determine the asymptotic behaviors for the multibreather solutions with different velocities in the limit , where the solution in the neighborhood of each breather tends to the simple one‐breather solution. …


Broadband Sound Propagation In A Seagrass Meadow Throughout A Diurnal Cycle, Kevin M. Lee, Megan S. Ballard, Gabriel R. Venegas, Jason D. Sagers, Andrew R. Mcneese, Jay R. Johnson, Preston S. Wilson, Abdullah Rahman Oct 2019

Broadband Sound Propagation In A Seagrass Meadow Throughout A Diurnal Cycle, Kevin M. Lee, Megan S. Ballard, Gabriel R. Venegas, Jason D. Sagers, Andrew R. Mcneese, Jay R. Johnson, Preston S. Wilson, Abdullah Rahman

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Acoustic propagation measurements were conducted in a Thalassia testudinum meadow in the Lower Laguna Madre, a shallow bay on the Texas Gulf of Mexico coast. A piezoelectric source transmitted frequency-modulated chirps (0.1 to 100 kHz) over a 24-h period during which oceanographic probes measured environmental parameters including dissolved oxygen and solar irradiance. Compared to a nearby less vegetated area, the received level was lower by as much as 30 dB during the early morning hours. At the peak of photosynthesis-driven bubble production in the late afternoon, an additional decrease in level of 11 dB was observed.


Nextgen Advises "Trying To Manage", Douglass Steinhauff, Joel Henrique Ellwanger, Monika Lewinska, Edmond Sanganyado, Yongsheng Ji, Buddini Iroshika Karawdeniya, Naike Bochatay, Eric Britt Moore, Aminata Coulibaly, Shaima Ibrahim, Déna Skye Jansen, Joshua I. James, David M. Cole, Anna Lipkin, Beth Mckinnon Adamowicz, Science Management Associates, Shervin Fatehi, Maria Helena Holmstrom, Rosa Li Oct 2019

Nextgen Advises "Trying To Manage", Douglass Steinhauff, Joel Henrique Ellwanger, Monika Lewinska, Edmond Sanganyado, Yongsheng Ji, Buddini Iroshika Karawdeniya, Naike Bochatay, Eric Britt Moore, Aminata Coulibaly, Shaima Ibrahim, Déna Skye Jansen, Joshua I. James, David M. Cole, Anna Lipkin, Beth Mckinnon Adamowicz, Science Management Associates, Shervin Fatehi, Maria Helena Holmstrom, Rosa Li

Chemistry Faculty Publications and Presentations

Peer mentors can provide crucial support to young scientists by asking questions to facilitate further reflection, assuring mentees that they are not alone, and suggesting potential next steps. We asked our readers to act as peer mentors to “Trying to Manage,” the anonymous student who posed the question above. Follow NextGen Voices on Twitter with hashtag #NextGenSci. Read previous NextGen Voices survey results at https://science.sciencemag.org/collection/nextgen-voices. —Jennifer Sills


Visible And Ultraviolet Upconversion And Near Infrared Downconversion Luminescence From Lanthanide Doped La2zr2o7 Nanoparticles, Santosh K. Gupta, Mitzy A. Penilla Garcia, Jose P. Zuniga, Maya Abdou, Yuanbing Mao Oct 2019

Visible And Ultraviolet Upconversion And Near Infrared Downconversion Luminescence From Lanthanide Doped La2zr2o7 Nanoparticles, Santosh K. Gupta, Mitzy A. Penilla Garcia, Jose P. Zuniga, Maya Abdou, Yuanbing Mao

Chemistry Faculty Publications and Presentations

Single materials which have a multitude of photophysical processes by selective doping are in high demand in the community of material science due to their multifunctional applications. Upconversion (UC) and downconversion (DC) luminescence properties of lanthanide doped nanoparticles (NPs) are imperative for their broad application potentials. Here, we describe two series of either doubly or triply doped La2Zr2O7 NPs synthesized by a molten salt method. For the former, La2Zr2O7:Yb,Er NPs display bright red and moderate green UC (VUC) and NIR-B DC (NDC) at around 1550 nm, which are highly desirable for in-vivo bioimaging applications. For the latter, La2Zr2O7:Gd,Yb,Tm NPs demonstrate …


An Accelerated Hierarchical Approach For Object Shape Extraction And Recognition, Mahmoud K. Quweider, Bassam Arshad, Hansheng Lei, Liyu Zhang, Fitratullah Khan Oct 2019

An Accelerated Hierarchical Approach For Object Shape Extraction And Recognition, Mahmoud K. Quweider, Bassam Arshad, Hansheng Lei, Liyu Zhang, Fitratullah Khan

Computer Science Faculty Publications and Presentations

We present a novel automatic supervised object recognition algorithm based on a scale and rotation invariant Fourier descriptors algorithm. The algorithm is hierarchical in nature to capture the inherent intra-contour spatial relationships between the parent and child contours of an object. A set of distance metrics are introduced to go along with the hierarchical model. To test the algorithm, a diverse database of shapes is created and used to train standard classification algorithms, for shape-labeling. The implemented algorithm takes advantage of the multi-threaded architecture and GPU efficient image-processing functions present in OpenCV wherever possible, speeding up the running time and …


Effects Of Solvent Used For Fabrication On Drug Loading And Release Kinetics Of Electrosprayed Temozolomide-Loaded Plga Microparticles For The Treatment Of Glioblastoma, Daniel A. Rodriguez De Anda, Nareg Ohannesian, Karen S. Martirosyan, Sue Anne Chew Oct 2019

Effects Of Solvent Used For Fabrication On Drug Loading And Release Kinetics Of Electrosprayed Temozolomide-Loaded Plga Microparticles For The Treatment Of Glioblastoma, Daniel A. Rodriguez De Anda, Nareg Ohannesian, Karen S. Martirosyan, Sue Anne Chew

Physics and Astronomy Faculty Publications and Presentations

Glioblastoma multiforme (GBM) is the most common and invasive form of malignant brain tumors and despite advances in surgery, radiotherapy, and chemotherapy, the survival of patients with GBM still remains poor. Temozolomide (TMZ) is the chemotherapy drug that is most commonly given orally after surgical resection of these tumors. In this study, the effects of solvents (i.e., dichloromethane and acetonitrile) used for the fabrication of electrosprayed TMZ-loaded poly(lactic-co-glycolic acid) (PLGA) on drug loading, loading efficiency, drug release kinetics, surface morphology, and particle size were investigated. The results from this study demonstrated that by using a larger volume of a solvent …


Joint Spectra Of Spherical Aluthge Transforms Of Commuting N-Tuples Of Hilbert Space Operators, Chafiq Benhida, Raul E. Curto, Sang Hoon Lee, Jasang Yoon Oct 2019

Joint Spectra Of Spherical Aluthge Transforms Of Commuting N-Tuples Of Hilbert Space Operators, Chafiq Benhida, Raul E. Curto, Sang Hoon Lee, Jasang Yoon

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

Let be a commuting n-tuple of operators on a Hilbert space , and let be its canonical joint polar decomposition (i.e. ⁎ ⁎ , a joint partial isometry, and ). The spherical Aluthge transform of T is the (necessarily commuting) n-tuple . We prove that , where denotes the Taylor spectrum. We do this in two stages: away from the origin, we use tools and techniques from criss-cross commutativity; at the origin, we show that the left invertibility of T or implies the invertibility of P. As a consequence, we can readily extend our main result to other spectral systems …


Estimating The Angular Power Spectrum Of The Gravitational-Wave Background In The Presence Of Shot Noise, Alexander C. Jenkins, Joseph D. Romano, Mairi Sakellariadou Oct 2019

Estimating The Angular Power Spectrum Of The Gravitational-Wave Background In The Presence Of Shot Noise, Alexander C. Jenkins, Joseph D. Romano, Mairi Sakellariadou

Physics and Astronomy Faculty Publications and Presentations

There has been much recent interest in studying anisotropies in the astrophysical gravitational-wave (GW) background, as these could provide us with interesting new information about galaxy clustering and large-scale structure. However, this information is obscured by shot noise, caused by the finite number of GW sources that contribute to the background at any given time. We develop a new method for estimating the angular spectrum of anisotropies, based on the principle of combining statistically-independent data segments. We show that this gives an unbiased estimate of the true, astrophysical spectrum, removing the offset due to shot noise power, and that …


A Comparison Of Three Types Of Permeable Pavements For Urban Runoff Mitigation In The Semi-Arid South Texas, U.S.A, Taufiqul Alam, Ahmed Mahmoud, Kim D. Jones, Juan Cesar Bezares-Cruz, Javier Guerrero Sep 2019

A Comparison Of Three Types Of Permeable Pavements For Urban Runoff Mitigation In The Semi-Arid South Texas, U.S.A, Taufiqul Alam, Ahmed Mahmoud, Kim D. Jones, Juan Cesar Bezares-Cruz, Javier Guerrero

Civil Engineering Faculty Publications and Presentations

This study examines the hydrologic and environmental performance of three types of permeable pavement designs: Porous Concrete Pavement (PCP), Permeable Interlocking Concrete (PICP), and Interlocking Block Pavement with Gravel (IBPG) in the semi-arid South Texas. Outflow rate, storage, Normalized Volume Reduction (NVR), Normalized Load Reductions (NLR) of Total Suspended Solids (TSS), and Biochemical Oxygen Demand (BOD5) were compared to results obtained from adjacent traditional pavements at different regional parking lots. A notable percentage of peak flow attenuation of approximately 31–100% was observed when permeable pavements were constructed and implemented. IBPG was capable to hold runoff from rainfall depths …


Abiotic And Biotic Limitations To Nodulation By Leguminous Cover Crops In South Texas, Stephanie Kasper, Bradley O. Christoffersen, Pushpa Soti, Alexis Racelis Sep 2019

Abiotic And Biotic Limitations To Nodulation By Leguminous Cover Crops In South Texas, Stephanie Kasper, Bradley O. Christoffersen, Pushpa Soti, Alexis Racelis

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Many farms use leguminous cover crops as a nutrient management strategy to reduce their need for nitrogen fertilizer. When they are effective, leguminous cover crops are a valuable tool for sustainable nutrient management. However, the symbiotic partnership between legumes and nitrogen fixing rhizobia is vulnerable to several abiotic and biotic stressors that reduce nitrogen fixation efficiency in real world contexts. Sometimes, despite inoculation with rhizobial strains, this symbiosis fails to form. Such failure was observed in a 14-acre winter cover crop trial in the Rio Grande Valley (RGV) of Texas when three legume species produced no signs of nodulation or …


Fast Equilibration Dynamics Of Viscous Particle-Laden Flow In An Inclined Channel, Jeffrey Wong, Michael R. Lindstrom, Andrea L. Bertozzi Sep 2019

Fast Equilibration Dynamics Of Viscous Particle-Laden Flow In An Inclined Channel, Jeffrey Wong, Michael R. Lindstrom, Andrea L. Bertozzi

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

A viscous suspension of negatively buoyant particles released into a wide, open channel on an incline will stratify in the normal direction as it flows. We model the early dynamics of this stratification under the effects of sedimentation and shear-induced migration. Prior work focuses on the behaviour after equilibration where the bulk suspension either separates into two distinct fronts (settled) or forms a single, particle-laden front (ridged), depending on whether the initial concentration of particles exceeds a critical threshold. From past experiments, it is also clear that this equilibration time scale grows considerably near the critical concentration. This paper models …


Binary Black Hole Population Properties Inferred From The First And Second Observing Runs Of Advanced Ligo And Advanced Virgo, B. P. Abbott, T. D. Abbott, S. Abraham, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Karla E. Ramirez, Satzhan Sitmukhambetov, D. Tuyenbayev, W. H. Wang, Adam Zadrozny Sep 2019

Binary Black Hole Population Properties Inferred From The First And Second Observing Runs Of Advanced Ligo And Advanced Virgo, B. P. Abbott, T. D. Abbott, S. Abraham, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Karla E. Ramirez, Satzhan Sitmukhambetov, D. Tuyenbayev, W. H. Wang, Adam Zadrozny

Physics and Astronomy Faculty Publications and Presentations

We present results on the mass, spin, and redshift distributions with phenomenological population models using the 10 binary black hole (BBH) mergers detected in the first and second observing runs completed by Advanced LIGO and Advanced Virgo. We constrain properties of the BBH mass spectrum using models with a range of parameterizations of the BBH mass and spin distributions. We find that the mass distribution of the more massive BH in such binaries is well approximated by models with no more than 1% of BHs more massive than 45M(circle dot) and a power-law index of alpha = 1.3(-1.7)(+1.4) (90% credibility). …


Winslamm Simulation Of Hydrologic Performance Of Permeable Pavements—A Case Study In The Semi-Arid Lower Rio Grande Valley Of South Texas, United States, Taufiqul Alam, Ahmed Mahmoud, Kim D. Jones, Juan Cesar Bezares-Cruz, Javier Guerrero Sep 2019

Winslamm Simulation Of Hydrologic Performance Of Permeable Pavements—A Case Study In The Semi-Arid Lower Rio Grande Valley Of South Texas, United States, Taufiqul Alam, Ahmed Mahmoud, Kim D. Jones, Juan Cesar Bezares-Cruz, Javier Guerrero

Civil Engineering Faculty Publications and Presentations

his study used the Source Loading and Management Model for Windows (WinSLAMM) to develop a set of calibrated hydrologic models for three types of regional permeable pavements—porous concrete pavement (PCP), permeable interlocking concrete pavement (PICP), and interlocking block pavement with gravel (IBPG). The objective was to assess the hydrologic performance of permeable pavements, including the runoff depth, peak discharge, percentage increment in runoff reduction of pavements as a function of rainfall depth, development area, and base aggregate porosity, respectively. The permeable pavements were monitored over a wide range of rainfall events in the semi-arid Lower Rio Grande Valley of South …


Wallaby Early Science − V. Askap Hi Imaging Of The Lyon Group Of Galaxies 351, B. Q. For, L. Staveley-Smith, T. Westmeier, M. Whiting, S. -H. Oh, B. Koribalski, J. Wang, O. I. Wong, G. Bekiaris, L. Cortese, A. Elagali, D. Kleiner, K. Lee-Waddell, Juan P. Madrid, A. Popping, J. Rhee, T. N. Reynolds, J. D. Collier, C. J. Phillips, M. A. Voronkov, O. Mueller, H. Jerjen Sep 2019

Wallaby Early Science − V. Askap Hi Imaging Of The Lyon Group Of Galaxies 351, B. Q. For, L. Staveley-Smith, T. Westmeier, M. Whiting, S. -H. Oh, B. Koribalski, J. Wang, O. I. Wong, G. Bekiaris, L. Cortese, A. Elagali, D. Kleiner, K. Lee-Waddell, Juan P. Madrid, A. Popping, J. Rhee, T. N. Reynolds, J. D. Collier, C. J. Phillips, M. A. Voronkov, O. Mueller, H. Jerjen

Physics and Astronomy Faculty Publications and Presentations

We present an HI study of the galaxy group LGG 351 usingWidefield ASKAP L-band Legacy All-sky Blind Survey (WALLABY) early science data observed with the Australian Square Kilometre Array Pathfinder (ASKAP). LGG 351 resides behind the M 83 group at a velocity range (cz) of ∼3500–4800 km s−1 within the rich Hydra-Centaurus overdensity region. We detect 40 sources with the discovery of a tidally interacting galaxy pair and two new HI sources that are not presented in previous optical catalogues. 23 out of 40 sources have new redshifts derived from the new HI data. This study is the largest WALLABY …


Directional Limits On Persistent Gravitational Waves Using Data From Advanced Ligo’S First Two Observing Runs, B. P. Abbott, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Karla E. Ramirez, Satzhan Sitmukhambetov, Robert Stone, D. Tuyenbayev, Wenhui Wang, Adam Zadrozny, Joseph D. Romano Sep 2019

Directional Limits On Persistent Gravitational Waves Using Data From Advanced Ligo’S First Two Observing Runs, B. P. Abbott, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Volker Quetschke, Malik Rakhmanov, Karla E. Ramirez, Satzhan Sitmukhambetov, Robert Stone, D. Tuyenbayev, Wenhui Wang, Adam Zadrozny, Joseph D. Romano

Physics and Astronomy Faculty Publications and Presentations

We perform an unmodeled search for persistent, directional gravitational wave (GW) sources using data from the first and second observing runs of Advanced LIGO. We do not find evidence for any GW signals. We place limits on the broadband GW flux emitted at 25 Hz from point sources with a power law spectrum at Fα;Θ < ð0.05–25Þ × 10−8 erg cm−2 s−1 Hz−1 and the (normalized) energy density spectrum in GWs at 25 Hz from extended sources at ΩαðΘÞ < ð0.19–2.89Þ × 10−8 sr−1 where α is the spectral index of the energy density spectrum. These represent improvements of 2.5–3× over previous limits. We also consider point sources emitting GWs at a single frequency, targeting the directions of Sco X-1, SN 1987A, and the Galactic center. The best upper limits on the strain amplitude of a potential source in these three directions range from h0 < ð3.6–4.7Þ × 10−25, 1.5× better than previous limits set with the same analysis method. We also report on a marginally significant outlier at 36.06 Hz. This outlier is not consistent with a persistent gravitational-wave source as its significance diminishes when combining all of the available data


Soil Indigenous Microbiome And Plant Genotypes Cooperatively Modify Soybean Rhizosphere Microbiome Assembly, Fang Liu, Tarek Hewezi, Sarah L. Lebeis, Vince Pantalone, Parwinder Grewal, Margaret E. Staton Sep 2019

Soil Indigenous Microbiome And Plant Genotypes Cooperatively Modify Soybean Rhizosphere Microbiome Assembly, Fang Liu, Tarek Hewezi, Sarah L. Lebeis, Vince Pantalone, Parwinder Grewal, Margaret E. Staton

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Background: Plants have evolved intimate interactions with soil microbes for a range of beneficial functions including nutrient acquisition, pathogen resistance and stress tolerance. Further understanding of this system is a promising way to advance sustainable agriculture by exploiting the versatile benefits offered by the plant microbiome. The rhizosphere is the interface between plant and soil, and functions as the first step of plant defense and root microbiome recruitment. It features a specialized microbial community, intensive microbe-plant and microbe-microbe interactions, and complex signal communication. To decipher the rhizosphere microbiome assembly of soybean (Glycine max), we comprehensively characterized the soybean rhizosphere microbial …


Don Reduction Of Wheat Grain Without Compromising The Lab-Scale Milling Properties Of Flour, Jikai Zhao, Xin Liu, Fengcheng Wang Sep 2019

Don Reduction Of Wheat Grain Without Compromising The Lab-Scale Milling Properties Of Flour, Jikai Zhao, Xin Liu, Fengcheng Wang

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Wheat bran was investigated to be the most commonly contaminated raw material by mycotoxins. However, there are no economical and practical pretreatment methods for industrial on-line application until now. The effect of light debranning on deoxynivalenol (DON) removal, polyphenol oxidase (PPO) activity and flour quality from lab-scale milling were performed. For on-line production, the DON concentration in wheat decreased 15.89% at debranning ratio of 1.2%. For lab experiment, the maximum DON removal for wheat and flour was 23.35% and 21.95%, respectively. However, the PPO activity, browning of dough sheet and flour qualities in lab scale exhibited no significant variation. …


Shape Equations For Two-Dimensional Manifolds Through A Moving Frame Variational Approach, Paul Bracken Sep 2019

Shape Equations For Two-Dimensional Manifolds Through A Moving Frame Variational Approach, Paul Bracken

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

A variational approach is given which can be applied to functionals of a general form to determine a corresponding Euler–Lagrange or shape equation. It is the intention to formulate the theory in detail based on a moving frame approach. It is then applied to a functional of a general form which depends on both the mean and Gaussian curvatures as well as the area and volume elements of the manifold. Only the case of a two-dimensional closed manifold is considered. The first variation of the functional is calculated in terms of the variations of the basic variables of the manifold. …


Prevalence And Distribution Of Ranavirus In Amphibians From, Drew R. Davis, Jillian K. Farkas, Taylor R. Kruisselbrink, Jessa L. Watters, Elyse D. Ellsworth, Jacob L. Kerby, Cameron D. Siler Aug 2019

Prevalence And Distribution Of Ranavirus In Amphibians From, Drew R. Davis, Jillian K. Farkas, Taylor R. Kruisselbrink, Jessa L. Watters, Elyse D. Ellsworth, Jacob L. Kerby, Cameron D. Siler

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Several infectious diseases are threatening amphibian species worldwide and have resulted in massmortality events across the globe. An emerging group of viral pathogens (ranaviruses) are documented to cause die-offs in amphibian populations worldwide, including in several regions of the U.S. Unfortunately, large gaps remain in our understanding of the distribution of this systemic pathogen in the U.S., including within the state of Oklahoma. To address this gap in our understanding, we carried out surveys of this infectious pathogen across 14 sites in seven southeastern Oklahoma counties in spring 2015, screening 17 amphibian species from this region. Using liver and tail …


Wallaby Early Science − V. Askap Hi Imaging Of The Lyon Group Of Galaxies 351, B. Q. For, Lister Staveley-Smith, Tobias Westmeier, M. Whiting, S. -H. Oh, Baerbel Koribalski, Juan P. Madrid Aug 2019

Wallaby Early Science − V. Askap Hi Imaging Of The Lyon Group Of Galaxies 351, B. Q. For, Lister Staveley-Smith, Tobias Westmeier, M. Whiting, S. -H. Oh, Baerbel Koribalski, Juan P. Madrid

Physics and Astronomy Faculty Publications and Presentations

We present an HI study of the galaxy group LGG 351 using Widefield ASKAP L-band Legacy All-sky Blind Survey (WALLABY) early science data observed with the Australian Square Kilometre Array Pathfinder (ASKAP). LGG 351 resides behind the M 83 group at a velocity range (cz) of ∼3500–4800 km s−1 within the rich Hydra-Centaurus overdensity region. We detect 40 sources with the discovery of a tidally interacting galaxy pair and two new HI sources that are not presented in previous optical catalogues. 23 out of 40 sources have new redshifts derived from the new HI data. This study is the largest …


The Gene Silencing Protein Morc-1 Topologically Entraps Dna And Forms Multimeric Assemblies To Cause Dna Compaction., Hyeongjun Kim, Linda Yen, Somsakul P. Wongpalee, Jessica A. Kirshner, Nicita Mehta, Yan Xue, Jonathan B. Johnston, Alma L. Burlingame, John K. Kim, Joseph J. Loparo, Steve E. Jacobsen Aug 2019

The Gene Silencing Protein Morc-1 Topologically Entraps Dna And Forms Multimeric Assemblies To Cause Dna Compaction., Hyeongjun Kim, Linda Yen, Somsakul P. Wongpalee, Jessica A. Kirshner, Nicita Mehta, Yan Xue, Jonathan B. Johnston, Alma L. Burlingame, John K. Kim, Joseph J. Loparo, Steve E. Jacobsen

Physics and Astronomy Faculty Publications and Presentations

Highlights

  • Caenorhabditis elegans MORC-1 traps DNA loops

  • Recruitment of additional MORC-1s cause further loop trapping and DNA compaction

  • MORC-1 assemblages become topologically entrapped on DNA

  • MORC-1 forms discrete foci in vivo and can phase transition in vitro

Summary

Microrchidia (MORC) ATPases are critical for gene silencing and chromatin compaction in multiple eukaryotic systems, but the mechanisms by which MORC proteins act are poorly understood. Here, we apply a series of biochemical, single-molecule, and cell-based imaging approaches to better understand the function of the Caenorhabditis elegans MORC-1 protein. We find that MORC-1 binds to DNA in a length-dependent but sequence non-specific …


Safedb: Spark Acceleration On Fpga Clouds With Enclaved Data Processing And Bitstream Protection, Han-Yee Kim, Rohyoung Myung, Boeui Hong, Heonchang Yu, Taeweon Suh, Lei Xu, Weidong Shi Aug 2019

Safedb: Spark Acceleration On Fpga Clouds With Enclaved Data Processing And Bitstream Protection, Han-Yee Kim, Rohyoung Myung, Boeui Hong, Heonchang Yu, Taeweon Suh, Lei Xu, Weidong Shi

Computer Science Faculty Publications and Presentations

This paper proposes SafeDB: Spark Acceleration on FPGA Clouds with Enclaved Data Processing and Bitstream Protection. SafeDB provides a comprehensive and systematic hardware-based security framework from the bitstream protection to data confidentiality, especially for the cloud environment. The AES key shared between FPGA and client for the bitstream encryption is generated in hard-wired logic using PKI and ECC. The data security is assured by the enclaved processing with encrypted data, meaning that the encrypted data is processed inside the FPGA fabric. Thus, no one in the system is able to look into clients' data because plaintext data are not exposed …


2-Hyponormality On Unilateral Weighted Shifts, Juan G. Benitez Aug 2019

2-Hyponormality On Unilateral Weighted Shifts, Juan G. Benitez

Theses and Dissertations

Given the concept of a normal operator, several weaker notions have been proposed in order to extend the properties of normal operators to a wider range of operators. One such notion is that of k-hyponormal operators. In this document, we focus our attention on the 2-hyponormality of weighted shift operators over a discrete Hilbert space. It will be shown that if a certain relation between the weights α = ( α0, α1,...) of a weighted shift Wα is satisfied, then the 2-hyponormality of Wα implies the hyponormality of Wαm for any m = 2, 3,....


Analysis Of The Cnn Algorithm In Target Recognition By Using The Mstar Database, Ligang Zou Aug 2019

Analysis Of The Cnn Algorithm In Target Recognition By Using The Mstar Database, Ligang Zou

Theses and Dissertations

With the rapid development of artificial intelligence technology and the emergence of a large number of innovative theories, the concept of deep learning is widely used in object detection, speech recognition, language translation and other fields. One of the important practices is target recognition in SAR images. Although it shows certain effectiveness in some researches, when using deep learning algorithm, there are still many problems that have not yet been solved. For example, people do not have a good understanding of how convolution works and the impact of convolution on the algorithm, although convolution works well in the CNN algorithm. …


Enhancing Transport In Classical And Quantum Systems Using Non-Hermiticity, Fatemeh Mostafavi Aug 2019

Enhancing Transport In Classical And Quantum Systems Using Non-Hermiticity, Fatemeh Mostafavi

Theses and Dissertations

Non-Hermiticity, the presence of gain and loss in the structures, provides a flexible platform to utilize the wave propagation in classical and quantum system. Here in this thesis by using this advantage we aim to enhance the transport in both realms.


Sand And Pumice Filter Amended With Activated Carbon And Biochar For Phosphorus Retention, James Jihoon Kang, Marissa Davila, Sergio Mireles, Jungseok Ho Aug 2019

Sand And Pumice Filter Amended With Activated Carbon And Biochar For Phosphorus Retention, James Jihoon Kang, Marissa Davila, Sergio Mireles, Jungseok Ho

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Phosphorus (P) loss via stormwater runoff is a water quality concern. The objective of this study was to investigate two commercial biochars relative to an activated carbon as an additive to geomedia (sand and pumice) for P removal. The batch adsorption experiment was conducted to assess P sorption of the geomedia and carbon materials while the leaching experiment was conducted in sand and pumice columns amended with carbon materials (5 % by weight). The batch adsorption test revealed that only activated carbon showed an appreciable P adsorption up to 19 %. Tested biochar materials showed no adsorption capacity for P …


A Search For A High-Order Excitation Of Surface Phonon Polaritons On Silicon Carbide Metasurfaces, Md Litan Ali Aug 2019

A Search For A High-Order Excitation Of Surface Phonon Polaritons On Silicon Carbide Metasurfaces, Md Litan Ali

Theses and Dissertations

Metasurfaces promise a control of light in free and confined spaces like optical waveguides using subwavelength-scale nanostructures. In this work, we experimentally investigate a variety control of light in more confined spaces which is localized surface waves of light. A control of surface waves has been challenged because of a lack of efficient nanostructures. For example, conventional and widely used metallic nanostructures have a high coupling efficiency of light due to free charge carriers but the charge carriers induce a high optical power loss. We recently designed and fabricated metal/dielectric multilayer aperture on ionic crystal, which shows a strong resonance …


Pipeline For Variable Star Detection And Eclipsing Binary Characterization, Moises Castillo Aug 2019

Pipeline For Variable Star Detection And Eclipsing Binary Characterization, Moises Castillo

Theses and Dissertations

Stars have been observed and recorded since ancient times. Practices of documenting brightness led to observations of variability. Optical CCD observations of eclipsing binary stars were made with instruments at UTRGV Dr. Cristina Valeria Torres Memorial Astronomical Observatory. There are two main goals for this project. The first goal is to create a pipeline written in python (lightcurator) that creates a framework for detecting variable stars. The pipeline starts by creating a list of ccd frames written in FITS format of an eclipsing binary star observation. These object frames are expected to be already reduced, but lightcurator provides tools to …


Organic-Inorganic Hybrid Materials For Piezoelectric/Triboelectric Nanogenerator, Aminur Rashid Chowdhury Aug 2019

Organic-Inorganic Hybrid Materials For Piezoelectric/Triboelectric Nanogenerator, Aminur Rashid Chowdhury

Theses and Dissertations

Nanogenerator has been a major focus among researchers of recent time due to its versatile use in everyday life. Though the discovery of the piezoelectricity and the triboelectricity dates back to 19th century, the use of these phenomena has not been in practical use till 2006. In this study we demonstrate the practical application of piezoelectric and triboelectric nanogenerator comprised of different copolymer and piezoelectric ceramic. The largely known piezoelectric polymer Polyvinylidene fluoride (PVDF) has also been utilized. The enhancement of piezoelectric properties of PVDF has been achieved by utilizing surface activation of accommodating ceramic. The Li doped ZnO has …