Physical Sciences and Mathematics Commons^™

Evolution Of Complex Features In Digital Organisms, Javier A. Magana

Theses and Dissertations - UTB/UTPA

This thesis examines how complex features evolve in digital organisms, and how capabilities that evolved earlier provide a scaffold for evolving new features. I wanted to see how the organisms used previous adaptations to succeed in new environments, and how significant are these previous adaptations. The system used is the Avida platform, which is software that implements Darwinian evolution on self-replicating digital organisms. First, the system is seeded with ancestors that can only replicate, which gave a baseline for the quality of the task at the end of evolution. Second, the system used ancestors from a simpler environment as seeds. …

Vizlab: The Design And Implementation Of An Immersive Virtual Environment System Using Game Engine Technology And Open Source Software, Moises D. Carrillo

Theses and Dissertations - UTB/UTPA

Virtual Reality (VR) is a term used to describe computer-simulated environments that can immerse users in a real or unreal world. Immersive systems are an essential component when experiencing virtual environments. Developing VR applications is time-consuming, and developers use many resources in creating VR applications. The separate components require integration, and the challenges in using public domain open source software present complex software development. The VizLab Virtual Reality System was created to meet these challenges and provide an integrated suite of tools for VR system development. VizLab supports the development of VR applications by using game engine and CAVE system …

Document Collection Visualization And Clustering Using An Atom Metaphor For Display And Interaction, Khanh V. Nghi

Theses and Dissertations - UTB/UTPA

Visual Data Mining have proven to be of high value in exploratory data analysis and data mining because it provides an intuitive feedback on data analysis and support decision-making activities. Several visualization techniques have been developed for cluster discovery such as Grand Tour, HD-Eye, Star Coordinates, etc. They are very useful tool which are visualized in 2D or 3D; however, they have not simple for users who are not trained. This thesis proposes a new approach to build a 3D clustering visualization system for document clustering by using k-mean algorithm. A cluster will be represented by a neutron (centroid) and …

I. Norbornene As Organocatalyst: Unusual: Amination Ii. Stereoselective Synthesis Of 3, 4 Di-Substituted Β-Lactams; Classical Vs Microwave Method, Ravi Reddaboyna

Theses and Dissertations - UTB/UTPA

I. Amine functionality is important in the preparation of biologically active and industrially useful molecules. Many approaches to form C―N bonds provide access to fine chemical building blocks, pharmaceuticals, agrochemicals, and surfactants. Microwave irradiation is a highly recommended ecofriendly approach for the synthesis of medicinally important compounds. Organic catalysis is important segment in the field of organic chemistry, for the synthesis of many complex molecules by providing a number of advantages.

II. Cancer refers to a large group of diseases characterized by uncontrolled cell multiplication and the ability of these cells to enter other tissues and spread to other parts …

Nascent Nanocomputers: Dna Self-Assembly In O(1) Stages, Michael C. Barnes

Theses and Dissertations - UTB/UTPA

DNA self-assembly offers a potential for nanoscale microcircuits and computers. To make that potential possible requires the development of reliable and efficient tile assembly models. Efficiency is often achieved by minimizing tile complexity, as well as by evaluating the cost and reliability of the specific elements of each tile assembly model. We consider a 2D tile assembly model at temperature 1. The standard 2D tile assembly model at temperature 1 has a tile complexity of O(n) for the construction of exact, complete n x n squares. However, previous research found a staged tile assembly model achieved a tile complexity of …

A Model For The Micro-Doppler Effect Of The Quadrupedal Body Motion, Noe Pena

Theses and Dissertations - UTB/UTPA

In radar returns from quadrupedal body motion the micro-Doppler effect is present. This effect can be used to identify and distinguish this motion from others. In this work the model for the micro-Doppler effect due to quadrupedal motion is developed from Maxwell’s equations. The common gait for all quadrupedal mammal motion is described and analyzed. The radar crossection of quadrupedal motion backscattering is discussed. Quadrupedal motion is simulated and the radar returns are analyzed. The micro-Doppler signatures are decomposed and kinematic parameters are extracted

The Schwinger Action Principle And Its Applications To Quantum Mechanics, Paul Bracken

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

No abstract provided.

The Thermodynamics Of Dna Loop Formation, From J To Z, Stephen D. Levene, Stefan M. Giovan, Andreas Hanke, Massa J. Shoura

Physics and Astronomy Faculty Publications and Presentations

The formation of DNA loops is a ubiquitous theme in biological processes, including DNA replication, recombination and repair, and gene regulation. These loops are mediated by proteins bound at specific sites along the contour of a single DNA molecule, in some cases many thousands of base pairs apart. Loop formation incurs a thermodynamic cost that is a sensitive function of the length of looped DNA as well as the geometry and elastic properties of the DNA-bound protein. The free energy of DNA looping is logarithmically related to a generalization of the Jacobson-Stockmayer factor for DNA cyclization, termed the J factor. …

A Biodistribution And Toxicity Study Of Cobalt Dichloride–Nacetyl Cysteine (C4) As An Implantable Mri Marker For Prostate Cancer Treatment, Steven J. Frank, Mary J. Johansen, Karen S. Martirosyan, Mihai Gagea, Carolyn S. Van Pelt

Physics and Astronomy Faculty Publications and Presentations

Purpose—C4, a cobalt dichloride–N-acetyl cysteine complex, is being developed as a positivesignal magnetic resonance imaging (MRI) marker to localize implanted radioactive seeds in prostate brachytherapy. We evaluated the toxicity and biodistribution of C4 in rats with the goal of simulating systemic effects of potential leakage from C4 MRI markers within the prostate.

Methods—9 μl doses (equivalent to leakage from 120 markers in a human) of control (0.9% sodium chloride), 1% (proposed for clinical use) and 10% C4 solution were injected into the prostates of male Sprague-Dawley rats via laparotomy. Organ toxicity and cobalt disposition in plasma, tissues, feces …

Novel Patterns Of Torsion-Inversion-Rotation Energy Levels In The Ν11 Asymmetric Ch-Stretch Spectrum Of Methylamine, Mahesh B. Dawadi, C. Michael Lindsay, Andrei Chirokolava, David S. Perry, Li Hong Xu

Chemistry Faculty Publications and Presentations

The high-resolution infrared spectrum of methylamine (CH3NH2) has been recorded using slit-jet direct absorption spectroscopy in the ν11 CH-stretch region (2965–3005 cm−1) with a resolution of 0.0025 cm−1. The 621 lines assigned by ground state combination differences represent 27 substates with |K′| ≤ 2 for the A, B, E1, and E2 symmetries. The spectrum of CH3NH2 is complicated by torsion and inversion tunneling connecting six equivalent minima. The upper states K′ = 0, ± 1 for E1 and E2 are substantially perturbed by “dark” states. The result in the spectrum is multiplets of 2 or 3 …

Einstein@Home All-Sky Search For Periodic Gravitational Waves In Ligo S5 Data, J. Aasi, J. Abadie, B. P. Abbott, R. Abbott, T. D. Abbott, M. Abernathy, T. Accadia, F. Acernese, C. Adams, T. Adams, P. Addesso, R. Adhikari, C. Affeldt, M. Agathos, K. Agatsuma, P. Ajith, B. Allen, A. Allocca, E. Amador Ceron, D. Amariutei, S. B. Anderson, W. G. Anderson, K. Arai, M. C. Araya, S. Ast, S. M. Aston, P. Astone, D. Atkinson, P. Aufmuth, C. Aulbert

Physics and Astronomy Faculty Publications and Presentations

This paper presents results of an all-sky search for periodic gravitational waves in the frequency range [50,1 190] Hz and with frequency derivative range of ∼[-20,1.1]×10-10 Hz s-1 for the fifth LIGO science run (S5). The search uses a noncoherent Hough-transform method to combine the information from coherent searches on time scales of about one day. Because these searches are very computationally intensive, they have been carried out with the Einstein@Home volunteer distributed computing project. Postprocessing identifies eight candidate signals; deeper follow-up studies rule them out. Hence, since no gravitational wave signals have been found, we report upper limits on …

Search For Gravitational Waves From Binary Black Hole Inspiral Merger And Ringdown In Ligo-Virgo Data From 2009-2010, J. Aasi, J. Abadie, B. P. Abbott, R. Abbott, T. D. Abbott, M. Abernathy, T. Accadia, F. Acernese, C. Adams, T. Adams, P. Addesso, R. Adhikari, C. Affeldt, M. Agathos, K. Agatsuma, P. Ajith, B. Allen, A. Allocca, E. Amador Ceron, D. Amariutei, S. B. Anderson, W. G. Anderson, K. Arai, M. C. Araya, S. Ast, S. M. Aston, P. Astone, D. Atkinson, P. Aufmuth, C. Aulbert

Physics and Astronomy Faculty Publications and Presentations

We report a search for gravitational waves from the inspiral, merger and ringdown of binary black holes (BBH) with total mass between 25 and 100 solar masses, in data taken at the LIGO and Virgo observatories between July 7, 2009 and October 20, 2010. The maximum sensitive distance of the detectors over this period for a (20,20)M⊙ coalescence was 300 Mpc. No gravitational wave signals were found. We thus report upper limits on the astrophysical coalescence rates of BBH as a function of the component masses for nonspinning components, and also evaluate the dependence of the search sensitivity on …

Non-Equilibrium Casimir Force Between Vibrating Plates, Andreas Hanke

Physics and Astronomy Faculty Publications and Presentations

We study the fluctuation-induced, time-dependent force between two plates confining a correlated fluid which is driven out of equilibrium mechanically by harmonic vibrations of one of the plates. For a purely relaxational dynamics of the fluid we calculate the fluctuation-induced force generated by the vibrating plate on the plate at rest. The time-dependence of this force is characterized by a positive lag time with respect to the driving. We obtain two distinctive contributions to the force, one generated by diffusion of stress in the fluid and another related to resonant dissipation in the cavity. The relation to the dynamic Casimir …

Limits On The Stochastic Gravitational Wave Background From The North American Nanohertz Observatory For Gravitational Waves, P. B. Demorest, R. D. Ferdman, M. E. Gonzalez, D. Nice, S. Ransom, I. H. Stairs, Z. Arzoumanian, A. Brazier, S. Burke-Spolaor, S. J. Chamberlin, J. M. Cordes, J. Ellis, L. S. Finn, P. Freire, S. Giampanis, F. Jenet, V. M. Kaspi, J. Lazio, A. N. Lommen, M. Mclaughlin, N. Palliyaguru, D. Perrodin, R. M. Shannon, X. Siemens, D. Stinebring, J. Swiggum, W. W. Zhu

Physics and Astronomy Faculty Publications and Presentations

We present an analysis of high-precision pulsar timing data taken as part of the North American Nanohertz Observatory for Gravitational Waves (NANOGrav) project. We have observed 17 pulsars for a span of roughly five years using the Green Bank and Arecibo radio telescopes. We analyze these data using standard pulsar timing models, with the addition of time-variable dispersion measure and frequency-variable pulse shape terms. Sub-microsecond timing residuals are obtained in nearly all cases, and the best rms timing residuals in this set are &thk30-50 ns. We present methods for analyzing post-fit timing residuals for the presence of a gravitational wave …

Carbon Monoxide Adsorption On Platinum-Osmium And Platinum-Ruthenium-Osmium Mixed Nanoparticles, N. Dimakis, Nestor E. Navarro, Eugene S. Smotkin

Physics and Astronomy Faculty Publications and Presentations

Density functional calculations (DFT) on carbon monoxide (CO) adsorbed on platinum, platinum-osmium, and platinum-ruthenium-osmium nanoclusters are used to elucidate changes on the adsorbate internal bond and the carbon-metal bond, as platinum is alloyed with osmium and ruthenium atoms. The relative strengths of the adsorbate internal bond and the carbon-metal bond upon alloying, which are related to the DFT calculated C–O and C–Pt stretching frequencies, respectively, cannot be explained by the traditional 5σ-donation/2π*-back-donation theoretical model. Using a modified π-attraction σ-repulsion mechanism, we ascribe the strength of the CO adsorbate internal bond to changes in the polarization of the adsorbate-substrate hybrid orbitals …

Fuel Efficient Computation In Passive Self-Assembly, Robert Schweller, Michael Sherman

Computer Science Faculty Publications and Presentations

In this paper we show that passive self-assembly in the context of the tile self-assembly model is capable of performing fuel efficient, universal computation. The tile self-assembly model is a premiere model of self-assembly in which particles are modeled by four-sided squares with glue types assigned to each tile edge. The assembly process is driven by positive and negative force interactions between glue types, allowing for tile assemblies floating in the plane to combine and break apart over time. We refer to this type of assembly model as passive in that the constituent parts remain unchanged throughout the assembly process …

Reactive Self-Heating Model Of Aluminum Spherical Nanoparticles, Karen S. Martirosyan, Maxim Zyskin

Physics and Astronomy Faculty Publications and Presentations

Aluminum-oxygen reaction is important in highly energetic and high pressure generating systems. Recent experiments with nanostructured thermites suggest that oxidation of aluminum nanoparticles occurs in a few microseconds. Such rapid reaction cannot be explained by a conventional diffusion-based mechanism. We present a rapid oxidation model of a spherical aluminum nanoparticle, using Cabrera-Mott moving boundary mechanism, and taking self-heating into account. In our model, electric potential solves the nonlinear Poisson equation. In contrast with the Coulomb potential, a “double-layer” type solution for the potential and self-heating leads to enhanced oxidation rates. At maximal reaction temperature of 2000 C, our model predicts …

Evaluation Of Single Electron Transfer Reduction Products Of 3-Oxoindoles As Antibacterial Agents, Debasish Bandyopadhyay, Irani Biswas, Subrata Laskar, Bidyut Basak

Chemistry Faculty Publications and Presentations

Objective: The objective of the present study is to assess the antibacterial properties of six indole derivatives viz, 3-(Naphth-1-y - methyl) –indole (II), 3-(1-Naphthylcarbonyl – indole (III), 3,3' –diformyl-2,2' –bis indole (IV), 1,4- (3,3' –di indolyl) – 1,4-dioxobutane (V), 3-benzoyl indole (VI) and 1,1 – bis – (3-indolyl)- ethane (VII) synthesized by single electron transfer reduction of 3-formylindole (I) against two Gram +ve and two Gram –ve bacteria which usually cause human infections.

Methods: Synthesis of 3-formyl indole from which the indole derivatives were prepared were further characterized by IR and NMR analysis. The six synthesized compounds were screened for …

Charge And Discharge Behaviour Of Li-Ion Batteries At Various Temperatures Containing Licoo2 Nanostructured Cathode Produced By Ccso, Y. Y. Mamyrbayeva, R. E. Beissenov, Mkhitar A. Hobosyan, S. E. Kumekov, Karen S. Martirosyan

Physics and Astronomy Faculty Publications and Presentations

There are technical barriers for penetration market requesting rechargeable lithium-ion battery packs for portable devices that operate in extreme hot and cold environments. Many portable electronics are used in very cold (-40 °C) environments, and many medical devices need batteries that operate at high temperatures. Conventional Li-ion batteries start to suffer as the temperature drops below 0 °C and the internal impedance of the battery increases. Battery capacity also reduced during the higher/lower temperatures. The present work describes the laboratory made lithium ion battery behaviour features at different operation temperatures. The pouch-type battery was prepared by exploiting LiCoO2 cathode material …

Study Of Dynamic Features Of Highly Energetic Reactions By Dsc And High-Speed Temperature Scanner (Hsts), Mkhitar Hobosyan, Kh. G. Kirakosyan, S. L. Kharatyan, Karen S. Martirosyan

Physics and Astronomy Faculty Publications and Presentations

The dynamic features of Al2O3 - polytetrafluoroethylene (PTFE) and Al - PTFE reactions in non-isothermal conditions are presented. The Differential Scanning Calorimetry (DSC) and High-Speed Temperature Scanner (HSTS) were used to characterize the Al2O3/Al – PTFE reactions at different heating rates. The study shows that the HSTS instrument can give more information about the reaction mechanism and kinetics than the conventional DSC measurements. In this work we show that high heating rates may reveal exothermic reaction between Al2O3 and PTFE that were previously unidentified. The PTFE can potentially remove the oxide layer from aluminum in the initial period of the …

On Equivalent Characterizations Of Convexity Of Functions, Eleftherios Gkioulekas

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

A detailed development of the theory of convex functions, not often found in complete form in most textbooks, is given. We adopt the strict secant line definition as the definitive definition of convexity. We then show that for differentiable functions, this definition becomes logically equivalent with the first derivative monotonicity definition and the tangent line definition. Consequently, for differentiable functions, all three characterizations are logically equivalent.

Analytic Matrix Elements Of The Schrödinger Equation, Muhammad I. Bhatti

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

A previously defined analytic technique of constructing matrix elements from the Bernstein-polynomials (B-poly) has been applied to Schr¨odinger equation. This method after solving generalized eigenvalue problem yields very accurate eigenenergies and eigenvectors. The numerical eigenvectors and eigenvalues obtained from this process agree well with exact results of the hydrogen-like systems. Furthermore, accuracy of the numerical spectrum of hydrogen equation depends on the number of B-polys being used to construct the analytical matrix elements. Validity of eigenvalues and quality of the constructed wavefunctions is verified by evaluating the Thomas-Reiche-Kuhn (TRK) sum rules. Excellent numerical agreement is seen with exact results of …

The Two-Phase Arterial Blood Flow With Or Without A Catheter And In The Presence Of A Single Or Multi Stenosis, Ani E. Garcia, Daniel N. Riahi

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

We consider the problem of blood flow in an artery with or without a catheter and in the presence of single or multi stenosis whose shape is based on the available experimental data for the stenosis in a human’s artery. The presence of stenosis in the artery, which locally narrows portion of the artery, can be a result of fatty materials such as cholesterol in the blood. The use of catheter is important as a standard tool for diagnosis and treatment in patience whose blood flow passage in the artery is affected adversely by the presence of the stenosis within …

Parameter Estimation For Compact Binary Coalescence Signals With The First Generation Gravitational-Wave Detector Network, J. Aasi, J. Abadie, Matthew Benacquista, R. Biswas, G. Cagnoli, Teviet Creighton, H. Daveloza, Mario C. Diaz, S. R. Morriss, Soma Mukherjee, M. E. Normandin, Volker Quetschke, Malik Rakhmanov, Robert Stone, A. S. Stroeer, Cristina V. Torres

Physics and Astronomy Faculty Publications and Presentations

Compact binary systems with neutron stars or black holes are one of the most promising sources for ground-based gravitational-wave detectors. Gravitational radiation encodes rich information about source physics; thus parameter estimation and model selection are crucial analysis steps for any detection candidate events. Detailed models of the anticipated waveforms enable inference on several parameters, such as component masses, spins, sky location and distance, that are essential for new astrophysical studies of these sources. However, accurate measurements of these parameters and discrimination of models describing the underlying physics are complicated by artifacts in the data, uncertainties in the waveform models and …

Zero-Bounded Limits As A Special Case Of The Squeeze Theorem For Evaluating Single-Variable And Multivariable Limits, Eleftherios Gkioulekas

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

Many limits, typically taught as examples of applying the ‘squeeze’ theorem, can be evaluated more easily using the proposed zero-bounded limit theorem. The theorem applies to functions defined as a product of a factor going to zero and a factor that remains bounded in some neighborhood of the limit. This technique is immensely useful for both single-variable limits and multidimensional limits. A comprehensive treatment of multidimensional limits and continuity is also outlined.

Characterizations Of Exponential Distribution Based On Sample Of Size Three, George Yanev, Santanu Chakraborty

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

Two characterizations of the exponential distribution based on equalities among order statistics in a random sample of size three are proved. This proves two conjectures stated recently in Arnold and Villasenor [4].

On Characterizations Of Exponential Distribution Through Order Statistics And Record Values With Random Shifts, M. Ahsanullah, Imtiyaz A. Shah, George Yanev

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

Distributional relations of the form Y d= X +T where X, Y, and T are record values or order statistics and the random translator T is independent from X are considered. Characterizations of the exponential distribution when the ordered random variables are non-neighboring are proved. Corollaries for Pareto and power function distributions are also derived.

Search For Long-Lived Gravitational-Wave Transients Coincident With Long Gamma-Ray Bursts, J. Aasi, Daniel Bessis, Teviet Creighton, Mario C. Diaz, Soma Mukherjee, Malik Rakhmanov, Volker Quetschke, Joseph D. Romano, Robert Stone, Lappoon R. Tang, Cristina V. Torres

Physics and Astronomy Faculty Publications and Presentations

Long gamma-ray bursts (GRBs) have been linked to extreme core-collapse supernovae from massive stars. Gravitational waves (GW) offer a probe of the physics behind long GRBs. We investigate models of long-lived (~10–1000 s) GW emission associated with the accretion disk of a collapsed star or with its protoneutron star remnant. Using data from LIGO’s fifth science run, and GRB triggers from the Swift experiment, we perform a search for unmodeled long-lived GW transients. Finding no evidence of GW emission, we place 90% confidence-level upper limits on the GW fluence at Earth from long GRBs for three waveforms inspired by a …

Facile Molten-Salt Synthesis Of Double Perovskite La2bmno 6 Nanoparticles, Yuanbing Mao

Chemistry Faculty Publications and Presentations

Crystalline double perovskite La2BMnO6 (B = Ni and Co) nanoparticles with an average grain size of ∼64 nm were successfully prepared using a facile, environmentally friendly, scalable molten-salt reaction at 700 °C in air. Their composition and structural and magnetic properties have been characterized.

Tuning Of Alternative Splicing - Switch From Proto-Oncogene To Tumor Suppressor, Aleksandra Shchelkunova, Boris Ermolinsky, Meghan Boyle, Ivan Mendez, Michael Lehker, Karen S. Martirosyan, Alexander V. Kazansky

Physics and Astronomy Faculty Publications and Presentations

STAT5B, a specific member of the ST AT family, is intimately associated with prostate tumor progression. While the full form of STAT5B is thought to promote tumor progression, a naturally occurring truncated isoform acts as a tumor suppressor. We previously demonstrated that truncated STAT5 is generated by insertion of an alternatively spliced exon and results in the introduction of an early termination codon. Present approaches targeting ST AT proteins based on inhibition of functional domains of STAT's, such as DNA-binding, cooperative binding (protein-protein interaction), dimerization and phosphorylation will halt the action of the entire gene, both the proto-oncogenic and tumor …