Physical Sciences and Mathematics Commons^™

Idiopathic Lesions And Visual Deficits In The American Lobster (Homarus Americanus) From Longs Island Sound, Ny, Christopher Robert Magel

Dissertations, Theses, and Masters Projects

In 1999 a mass mortality of the American lobster (Homarus americanus) occurred in western Long Island Sound (WLIS). Although the etiology remains unknown, warm bottom water temperature, hypoxia, heavy metal poisoning, and pesticides have been suggested as casual factors. Subsequently, lobsters from WLIS have continued to display symptoms of morbidity that include lethargy and cloudy grey eyes, caused by idiopathic lesions. The effects of these lesions on lobster vision are unknown. We therefore used electoretinography (ERG) to document changes in visual function in lobsters obtained from WLIS, while simultaneously using histology to quantify the extent of damage. Of the lobsters …

An Evaluation Of Norovirus Persistence In Estuarine Water And Of Methods For Its Detection In Treated Sewage Effluent, Margaret H. Fagan

Dissertations, Theses, and Masters Projects

No abstract provided.

Formal Analysis Of Firewall Policies, Robert Mathias Marmorstein

Dissertations, Theses, and Masters Projects

This dissertation describes a technique for formally analyzing a firewall security policy using a quasi-reduced multiway decision diagram model. The analysis allows a system administrator to detect and repair errors in the configuration of the firewall without a tedious manual inspection of the firewall rules.;We present four major contributions. First, we describe a set of algorithms for representing a firewall rule set as a multi-way decision diagram and for solving logical queries against that model. We demonstrate the application of these techniques in a tool for analyzing iptables firewalls. Second, we present an extension of our work that enables analysis …

New Kent County, Virginia Shoreline Inventory Report Methods And Guidelines, Marcia Berman, Harry Berquist, Sharon Killeen, Karinna Nunez, Tamia Rudnicky, Daniel E. Schatt, David Weiss, Karen Reay

Reports

The data inventory developed for the Shoreline Inventory is based on a three‑tiered shoreline assessment approach. In most cases this assessment characterizes conditions that can be observed from a small boat navigating along the shoreline. The three tiered shoreline assessment approach divides the shorezone into three regions: 1) the immediate riparian zone, evaluated for land use; 2) the bank, evaluated for height, stability, cover and natural protection; and 3) the shoreline, describing the presence of shoreline structures for shore protection and recreational purposes. Hand-held GPS units are used to log features observed in the field.

Three GIS coverages are developed …

A Molecular Analysis Of Atlantic Menhaden (Brevoortia Tyrannus) Stock Structure, Abigail J. Lynch

Dissertations, Theses, and Masters Projects

Atlantic menhaden is an ecologically and economically important species along the U.S. east coast. As a filter-feeder and key prey fish, it provides a critical link between primary production, phytoplankton, and larger piscivorous predators, such as striped bass, bluefish, and weakfish. The species is also the target of one of the largest commercial fisheries in the country. Menhaden are assessed as a single, coastwide stock, and recent assessments indicate that it is not overfished. However, there is very limited population genetics data to support the assumption of a single stock. Additionally, the recent consolidation of the fishery and localization of …

Factors Controlling Tidal Flat Morphology In South San Francisco Bay Between The 1890s And 2005, Joshua Alexander Bearman

Dissertations, Theses, and Masters Projects

There is currently a project underway to restore many of the man-made salt ponds along the shores of South San Francisco Bay (SSFB) back to tidal marsh, potentially reestablishing these areas as sinks for SSFB sediments. While there have been recent studies examining the evolution of newly restored marsh areas in SSFB, there have been no recent projects focusing on the expected response of valuable tidal flat environments adjacent to the restored marshes. To help fill this void, this project seeks to characterize SSFB tidal flat morphodynamics, both spatially and temporally, through examination of historic morphologic variability and change along …

Twine-Top Modifications Of Sea-Scallop Dredges: Reducing Yellowtail-Flounder Bycatch, Kelli A. Milleville

Dissertations, Theses, and Masters Projects

No abstract provided.

Effects Of Urban Development On Breeding Bird Diversity: The Role Of Diet And Migration, Elise Anne Larsen

Dissertations, Theses, and Masters Projects

No abstract provided.

Effects Of Metal-Based Montmorillonite Clay And Zeolite Additives On The Fire Retardance And Smoke Suppression Of Poly(Vinyl Chloride), Alexander George Zestos

Dissertations, Theses, and Masters Projects

No abstract provided.

Novel Approaches To The Fabrication Of Highly Conductive Silver Surfaces Well Adhered To Polyimide Substrates, Luke Michael Davis

Dissertations, Theses, and Masters Projects

No abstract provided.

Classification Of Non-Heat Generating Outdoor Objects In Thermal Scenes For Autonomous Robots, William L. Fehlman

Dissertations, Theses, and Masters Projects

We have designed and implemented a physics-based adaptive Bayesian pattern classification model that uses a passive thermal infrared imaging system to automatically characterize non-heat generating objects in unstructured outdoor environments for mobile robots. In the context of this research, non-heat generating objects are defined as objects that are not a source for their own emission of thermal energy, and so exclude people, animals, vehicles, etc. The resulting classification model complements an autonomous bot's situational awareness by providing the ability to classify smaller structures commonly found in the immediate operational environment. Since GPS depends on the availability of satellites and onboard …

Correction Of Finite Size Errors In Many-Body Electronic Structure Calculations, Hendra Kwee

Dissertations, Theses, and Masters Projects

Electronic structure calculations using simulation cells for extended systems typically incorporate periodic boundary conditions as an attempt to mimic the real system with a practically infinite number of particles. Periodic boundary conditions introduce unphysical constraints that give rise to finite-size errors. In mean-field type calculations, the infinite size limit is achieved by simple quadrature in the Brillouin zone using a finite number of k-points. Many-body electronic structure calculations with explicit two-particle interactions cannot avail themselves of this simplification. Direct extrapolation is computationally costly while size correction with less accurate methods is frequently not sufficiently accurate. The Hartree-Fock method neglects the …

Surface Study Of Niobium For Superconducting Radio Frequency (Srf) Accelerators, Hui Tian

Dissertations, Theses, and Masters Projects

Niobium rf superconductivity is a near-surface phenomenon because of the shallow rf penetration depth. Accordingly, the performance of Nb SRF accelerator cavities is strongly impacted by the topmost few nanometers interior surface, especially as impacted by the final surface conditioning treatments.;Surface topography impacts performance through local loss of superconductivit caused by intrusion of the rf magnetic field, which is enhanced at sharp protrusions. "Sharpness" comprises both vertical and lateral aspects, requiring development a new characterization approach beyond the familiar roughness measurements (Ra, Rz), which view only the vertical component. Stylus profilomety and atomic force microscopy traces view surface topography from …

Age, Growth, And Demography Of The Sandbar Shark, Carcharhinus Plumbeus, Over Temporal And Spatial Scales, Jason G. Romine

Dissertations, Theses, and Masters Projects

Numbers of sandbar sharks, Carcharhinus plumbeus, in the Northwest Atlantic have experienced drastic declines since the early 1980's reaching their minima during the early 1990's. Catch rates in the early 1990's were a mere 25% of those during the 1980's. Such drastic reductions in other fish stocks have often caused compensatory responses, most notably the cod stocks in the Northwest Atlantic. Compensatory responses in depressed populations may include decreased natural mortality, increased fecundity, or increased growth rates. Compensation for population fluctuations below carrying capacities have been recognized for many terrestrial and oceanic r-selected organisms, but few instances have been noted …

Variability In Geologic Framework And Shoreline Change: Assateague And Wallops Islands, Eastern Shore Of Virginia, Geoffrey L. Wikel

Dissertations, Theses, and Masters Projects

No abstract provided.

Static And Dynamical Manifestations Of Hamiltonian Monodromy, John B. Delos, Christopher Robert Schleif, G. Dhont

Arts & Sciences Articles

The word 'monodromy' means 'once around a course', and it refers to changes that might occur when a system goes around some closed loop [1]. We discuss here a phenomenon whose proper name is 'nontrivial monodromy of action and angle variables in a Hamiltonian system'; for the obvious reason, we just call it 'Hamiltonian monodromy'. In this paper we describe two manifestations of Hamiltonian monodromy: a manifestation in a time-dependent classical system, and a manifestation in a stationary quantum system. Then we give a brief description of the mathematical theory, and finally close with a short survey of previous work …

International Trade In Seafood And Related Products: An Assessment Of U.S. Trade Patterns, James E. Kirkley, John M. Ward, Christopher M. Moore, Christopher Hayes, Brian Hooker, John Walden

Reports

No abstract provided.

An Integrated Approach To Understand Relationships Between Shallow Water Benthic Community Structure And Ecosystem Function Serdp Project Si-1335, Linda C. Schaffner, Iris C. Anderson, Jennifer W. Stanhope, David J. Gillett, William J. Metcalfe, Alice M.Z. Brylawski

Reports

Human activities along our nation's coasts often lead to habitat modification, pollution, and overexploitation of living resources in coastal and estuarine waters (U.S. Commission on Ocean Policy 2004). Coastal areas are the most developed regions of the United States. In addition to recreational and leisure activities, these areas support commercial fishing, aquaculture, shipping, and defense activities. Numerous human activities can have detrimental effects on biodiversity and the provision of ecosystem services that support and sustain human populations. Given their proximity to the land and human population centers, nearshore estuarine ecosystems are especially vulnerable. Effective management can be improved with a …

Interspecific Interactions In Oyster Reef Communities: The Effect Of Established Fauna On Oyster Larval Recruitment, Brian B. Barnes

Dissertations, Theses, and Masters Projects

The behaviors of oyster larvae are difficult to monitor or experimentally manipulate, especially in field conditions. As a result, little is known of the fate of oysters in the larval portion of their life cycle, prior to recruitment. At the transition from pelagic larvae to benthic adults, larvae are likely to come into contact with many invertebrates resident on oyster reefs. Of these, fouling epifauna are generally believed to reduce the settlement of interspecific larvae through competitive exclusion and predation. Studies of these interactions, however, often utilize artificial settlement panels, which can exhibit different recruitment patterns to those observed on …

A Modern Sediment Budget For The Continental Shelf Off The Waipaoa River, New Zealand, Andrea J. Miller

Dissertations, Theses, and Masters Projects

No abstract provided.

The Survival Benefit Of Benthic Macroalgae Gracilaria Vermiculophylla As An Alternative Nursery Habitat For Juvenile Blue Crabs, Justin A. Falls

Dissertations, Theses, and Masters Projects

The Chesapeake Bay blue crab is in decline. One of the threats to it is the loss of its once plentiful nursery habitat, seagrass, due to baywide eutrophication and climate change. The emergence of the non-native benthic macroalga Gracilaria vermiculophylla may offer the blue crab an alternative nursery if it can provide juvenile crabs a refuge from predation. The ability of Gracilaria to protect juvenile blue crabs was investigated in mesocosm and field survival studies, which were combined into a larger dataset. All of these studies used tethering and therefore a tethering validation study in mesocosms accompanied these experiments. In …

Sediment Transport And Erodibility In The York River Estuary: A Model Study, Jeffrey Paul Rinehimer

Dissertations, Theses, and Masters Projects

A cohesive sediment bed model was implemented in the Community Sediment Transport Modeling System (CSTMS) to examine processes influencing sediment erodibility and suspended sediment concentrations. Estimates of eroded mass from the sediment bed model were calibrated and verified with erosion chamber measurements from the York River, Virginia, a tidally-dominated environment. A constant erosion rate parameter combined with depth-varying critical shear stress was sufficient to model erosion observations of depth-limited sediment cores. Sensitivity of total eroded mass to seasonal variations in erodibility and changes in consolidation time scale was evaluated during spring-neap variations in bottom stresses. Differences were greatest during spring …

A Bio-Economic Feasibility Model For Remote Setting: Potential For Oyster Aquaculture In Virginia, Michael Spohn Congrove

Dissertations, Theses, and Masters Projects

No abstract provided.

Zooplankton Community Structure In A Cyclonic And Mode-Water Eddy In The Sargasso Sea, Bethany Rose Eden

Dissertations, Theses, and Masters Projects

Recent evidence suggests that mesoscale eddies are an important mechanism for supplying nutrients to the surface waters of oligotrophic gyres. However, little is known about the biological response to these physical perturbations. Because mesozooplankton play a key role in food-web interactions and the flux of carbon and other elements from surface waters, changes in mesozooplankton community structure can affect biogeochemical cycling. During the summers of 2004 and 2005, respectively, we followed the development of a cyclonic eddy and an anti-cyclonic mode-water eddy in the Sargasso Sea. Zooplankton tows were conducted across both eddies using a Multiple Opening and Closing Net …

Influences Of Habitat Conditions On Submerged Aquatic Vegetation Development In The Chickahominy River And Other Virginia Tributaries Of The Chesapeake Bay, Erin C. Shields

Dissertations, Theses, and Masters Projects

Recently, there has been an expansion of submerged aquatic vegetation (SAV) in the tidal fresh and oligohaline portions of lower Chesapeake Bay tributaries. Much like the resurgence seen in the Potomac in the 1980’s, this spread of SAV in Virginia systems such as the Mattaponi, Pamunkey and Chickahominy seems to have been initiated by the introduction and spread of the invasive species Hydrilla verticillata, and appears to have been rapid. However the resurgence in the Piankatank has occurred in the absence of the introduction of this species. The factors that are influencing the growth of SAV in these tributary environments, …

Modeling Mercury Biomagnification In The South River, Kyle R. Tom

Dissertations, Theses, and Masters Projects

No abstract provided.

Effects Of Shoreline Development And Oyster Reefs On Benthic Communities In Lynnhaven, Virginia, Amanda Sue Lawless

Dissertations, Theses, and Masters Projects

Shoreline hardening and construction of restoration oyster reefs are occurring at rapid rates throughout Chesapeake Bay and little research has been conducted to determine whether installment of a hardened shoreline and oyster reef placement has an effect on the surrounding benthic infaunal communities. I investigated the effects of shoreline development and oyster reefs on benthic communities in Lynnhaven, Virginia. Throughout Lynnhaven, I determined the effects of shoreline type (natural marsh, oyster reef, rip-rap and bulkhead), sediment grain size, Total Organic Carbon/Total Nitrogen (TOC/TN) of the sediment, and predation (caging study) on density, biomass, and diversity of benthic infauna. An information-theoretic …

Recent Sedimentation Patterns And Facies Distribution On The Waipaoa River Shelf, N.Z, Lila Eve Rose

Dissertations, Theses, and Masters Projects

No abstract provided.

Acoustic Measurements Of Cohesive Sediment Transport: Suspension To Consolidation, Ho Kyung Ha

Dissertations, Theses, and Masters Projects

This dissertation aims at utilizing the acoustic approach to measure cohesive sediment behaviors including (1) suspension, (2) settling, (3) deposition and (4) consolidation. The first two processes were attempted to interpret by means of backscattered signal analysis, while the last two processes were done by echo signal analysis. The acoustic instruments used in this study include Acoustic Doppler Velocimeter (ADV), Pulse Coherent Acoustic Doppler Profiler (PC-ADP) and Micro-Chirp system. Used sediments are pure kaolinite and in-situ sediments collected from Mai Po and Clay Bank. 5-MHz ADV was used to estimate the suspended sediment concentration (SSC) and settling velocity (ws). For …

Natural Mortality Of Blue Crab: Estimation And Influence On Population Dynamics, David A. Hewitt

Dissertations, Theses, and Masters Projects

The blue crab Callinectes sapidus supports one of the most important fisheries in the Chesapeake Bay and is the leading contributor to blue crab landings in the United States. Assessment and management of blue crab stocks has been hampered by a lack of estimates of natural mortality rates, a key parameter in assessment models. In Chapter 2, we demonstrate that the approach used for estimating natural mortality that had been used in past assessments was flawed, and provide justification for a superior alternative. In Chapter 3, we synthesize our current understanding of natural mortality rates in adult blue crab and …