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Articles 2791 - 2820 of 3840

Full-Text Articles in Physical Sciences and Mathematics

Data Processing In Space, Time, And Semantics Dimensions, Farshad Hakimpour, Boanerges Aleman-Meza, Matthew Perry, Amit P. Sheth Jan 2006

Data Processing In Space, Time, And Semantics Dimensions, Farshad Hakimpour, Boanerges Aleman-Meza, Matthew Perry, Amit P. Sheth

Kno.e.sis Publications

This work presents an experimental system for data processing in space, time and semantics dimensions using current Semantic Web technologies. The paper describes how we obtain geographic and event data from Internet sources and also how we integrate them into an RDF store. We briefly introduce a set of functionalities in space, time and semantics dimensions. These functionalities are implemented based on our existing technology for main-memory based RDF data processing developed in the LSDIS Lab. A number of these functionalities are exposed as REST Web services. We present two sample client side applications that are developed using a combination …

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An Investigation Of Codon Usage Bias Including Visualization And Quantification In Organisms Exhibiting Multiple Biases, Douglas W. Raiford, Travis E. Doom, Dan E. Krane, Michael L. Raymer Jan 2006

An Investigation Of Codon Usage Bias Including Visualization And Quantification In Organisms Exhibiting Multiple Biases, Douglas W. Raiford, Travis E. Doom, Dan E. Krane, Michael L. Raymer

Kno.e.sis Publications

Prokaryotic genomic sequence data provides a rich resource for bioinformatic analytic algorithms. Information can be extracted in many ways from the sequence data. One often overlooked process involves investigating an organism’s codon usage. Degeneracy in the genetic code leads to multiple codons coding for the same amino acids. Organism’s often preferentially utilize specific codons when coding for an amino acid. This biased codon usage can be a useful trait when predicting a gene’s expressivity or whether the gene originated from horizontal transfer. There can be multiple biases at play in a genome causing errors in the predictive process. For this …

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Cs 415-01: Social Implications Of Computing, Leo Finkelstein Jan 2006

Cs 415-01: Social Implications Of Computing, Leo Finkelstein

Computer Science & Engineering Syllabi

CS 415 is a communication skills course using as its subject matter current salient issues associated with the social implications of computing. In addition to the course text, you will need to use certain reading materials in the library and elsewhere, and you will be responsible for using concepts and theories provided in class lectures and discussions.

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Cs 466/666-01: Introduction To Formal Languages, Thomas Sudkamp Jan 2006

Cs 466/666-01: Introduction To Formal Languages, Thomas Sudkamp

Computer Science & Engineering Syllabi

CS 466/666 is an introduction to formal language and automata theory. In this course we will examine methods for defining syntax of languages and recognizing patterns: the syntax of languages can be defined using grammars and patterns accepted by finite state machines. Along with presenting with fundamentals of these two topics, the course will develop and investigate the relationships between language definition and pattern recognition. The text will be the third edition of Languages and Machines: An Introduction to the Theory of Computer Science.

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Cs 205-04,05,06: Computer Literacy And Office Automation, Terri Bauer Jan 2006

Cs 205-04,05,06: Computer Literacy And Office Automation, Terri Bauer

Computer Science & Engineering Syllabi

No abstract provided.

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Cs 142-01: Computer Programming Ii, Eric Maston Jan 2006

Cs 142-01: Computer Programming Ii, Eric Maston

Computer Science & Engineering Syllabi

This course provides a continuation to the general introduction of computer programming begun in CS 141. Examples from and applications to a broad range of problems are given. The concepts covered will be applied to the Java programming language. (Students must register for both lecture and one laboratory section.)

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Ceg 402/602-01: Introduction To Computer Communication, Bin Wang Jan 2006

Ceg 402/602-01: Introduction To Computer Communication, Bin Wang

Computer Science & Engineering Syllabi

No abstract provided.

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Ceg 860-01: Object-Oriented Programming, Krishnaprasad Thirunarayan Jan 2006

Ceg 860-01: Object-Oriented Programming, Krishnaprasad Thirunarayan

Computer Science & Engineering Syllabi

This course motivates the need for object-oriented programming, and studies, in detail, object-oriented programming techniques, languages, and technology. The lectures will focus on the foundations of OOP, while the student presentations will focus on the applications and extensions of Object Technology.

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Ceg 750-01: Microprocessor, Jack Jean Jan 2006

Ceg 750-01: Microprocessor, Jack Jean

Computer Science & Engineering Syllabi

No abstract provided.

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Ceg 435/635-01: Distributed Computing And Systems, Yong Pei Jan 2006

Ceg 435/635-01: Distributed Computing And Systems, Yong Pei

Computer Science & Engineering Syllabi

Study of process coordination, client-server computing, network and distributed operating systems, network and distributed file systems, concurrency control, recovery of distributed transactions, and fault-tolerant computing.

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Ceg 433/633-01: Operating Systems, Prabhaker Mateti Jan 2006

Ceg 433/633-01: Operating Systems, Prabhaker Mateti

Computer Science & Engineering Syllabi

The management of resources in multi-user computer systems. Emphasis is on problems of file-system design, process scheduling, memory allocation, protection, and tools needed for solutions. Course projects use the C/C++ language and include the design of portions of an operating system. 4 credit hours.

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Ceg 411/611: Microprocessor-Based System Design, Jack Jean Jan 2006

Ceg 411/611: Microprocessor-Based System Design, Jack Jean

Computer Science & Engineering Syllabi

No abstract provided.

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Ceg 360/560-01: Digital System Design, Travis E. Doom Jan 2006

Ceg 360/560-01: Digital System Design, Travis E. Doom

Computer Science & Engineering Syllabi

Design of digital systems. Topics include flip-flops, registers, counters, programmable logic devices, memory devices, register-level design, and microcomputer system organization.

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Driving Deep Semantics In Middleware And Networks: What, Why And How?, Amit P. Sheth Jan 2006

Driving Deep Semantics In Middleware And Networks: What, Why And How?, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

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Predicting Domain Specific Entities With Limited Background Knowledge, Christopher Thomas, Amit P. Sheth Jan 2006

Predicting Domain Specific Entities With Limited Background Knowledge, Christopher Thomas, Amit P. Sheth

Kno.e.sis Publications

This paper proposes a framework for automatic recognition of domain-specific entities from text, given limited background knowledge, e.g. in form of an ontology. The algorithm exploits several lightweight natural language processing techniques, such as tokenization and stemming, as well as statistical techniques, such as singular value decomposition (SVD) to suggest domain relatedness of unknown entities.

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Semi-Supervised Conditional Random Fields For Improved Sequence Segmentation And Labeling, Feng Jiao, Shaojun Wang, Chi-Hoon Lee, Russell Greiner, Dale Schuurmans Jan 2006

Semi-Supervised Conditional Random Fields For Improved Sequence Segmentation And Labeling, Feng Jiao, Shaojun Wang, Chi-Hoon Lee, Russell Greiner, Dale Schuurmans

Kno.e.sis Publications

We present a new semi-supervised training procedure for conditional random fields (CRFs) that can be used to train sequence segmentors and labelers from a combination of labeled and unlabeled training data. Our approach is based on extending the minimum entropy regularization framework to the structured prediction case, yielding a training objective that combines unlabeled conditional entropy with labeled conditional likelihood. Although the training objective is no longer concave, it can still be used to improve an initial model (e.g. obtained from supervised training) by iterative ascent. We apply our new training algorithm to the problem of identifying gene and protein …

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Using Query-Specific Variance Estimates To Combine Bayesian Classifiers, Chi-Hoon Lee, Russell Greiner, Shaojun Wang Jan 2006

Using Query-Specific Variance Estimates To Combine Bayesian Classifiers, Chi-Hoon Lee, Russell Greiner, Shaojun Wang

Kno.e.sis Publications

Many of today's best classification results are obtained by combining the responses of a set of base classifiers to produce an answer for the query. This paper explores a novel "query specific" combination rule: After learning a set of simple belief network classifiers, we produce an answer to each query by combining their individual responses, using weights based inversely on their respective variances around their responses. These variances are based on the uncertainty of the network parameters, which in turn depend on the training datasample. In essence, this variance quantifies the base classifier's confidence of its response to this query. …

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Clustering Similarity Comparison Using Density Profiles, Eric Bae, James Bailey, Guozhu Dong Jan 2006

Clustering Similarity Comparison Using Density Profiles, Eric Bae, James Bailey, Guozhu Dong

Kno.e.sis Publications

The unsupervised nature of cluster analysis means that objects can be clustered in many ways, allowing different clustering algorithms to generate vastly different results. To address this, clustering comparison methods have traditionally been used to quantify the degree of similarity between alternative clusterings. However, existing techniques utilize only the point memberships to calculate the similarity, which can lead to unintuitive results. They also cannot be applied to analyze clusterings which only partially share points, which can be the case in stream clustering. In this paper we introduce a new measure named ADCO, which takes into account density profiles for each …

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An Online Discriminative Approach To Background Subtraction, Li Cheng, Shaojun Wang, Terry Caelli Jan 2006

An Online Discriminative Approach To Background Subtraction, Li Cheng, Shaojun Wang, Terry Caelli

Kno.e.sis Publications

We present a simple, principled approach to detecting foreground objects in video sequences in real-time. Our method is based on an on-line discriminative learning technique that is able to cope with illumination changes due to discontinuous switching, or illumination drifts caused by slower processes such as varying time of the day. Starting from a discriminative learning principle, we derive a training algorithm that, for each pixel, computes a weighted linear combination of selected past observations with time-decay. We present experimental results that show the proposed approach outperforms existing methods on both synthetic sequences and real video data.

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Semantics Enabled Dynamic Process Configuration, Kunal Verma, Karthik Gomadam, Jonathan Lathem, Amit P. Sheth, John A. Miller Jan 2006

Semantics Enabled Dynamic Process Configuration, Kunal Verma, Karthik Gomadam, Jonathan Lathem, Amit P. Sheth, John A. Miller

Kno.e.sis Publications

Web processes are the next generation workflows created using Web services. This paper addresses research issues in creating a framework for configuring and executing dynamic Web processes. Our approach is that of a multiparadigm constraint analysis for process configuration using quantitative and logical constraints. We also present a software architecture and an engineering approach for extending current Web service infrastructure to support dynamic Web processes. An execution environment, extending Apache Axis, one of the most popular SOAP implementations, to support dynamic process configuration is presented. Empirical evaluation of the system is performed to demonstrate the cost benefits of dynamic process …

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Knowledge Modeling And Its Application In Life Sciences: A Tale Of Two Ontologies, Satya S. Sahoo, Christopher Thomas, Amit P. Sheth, William S. York, Samir Tartir Jan 2006

Knowledge Modeling And Its Application In Life Sciences: A Tale Of Two Ontologies, Satya S. Sahoo, Christopher Thomas, Amit P. Sheth, William S. York, Samir Tartir

Kno.e.sis Publications

High throughput glycoproteomics, similar to genomics and proteomics, involves extremely large volumes of distributed, heterogeneous data as a basis for identification and quantification of a structurally diverse collection of biomolecules. The ability to share, compare, query for and most critically correlate datasets using the native biological relationships are some of the challenges being faced by glycobiology researchers. As a solution for these challenges, we are building a semantic structure, using a suite of ontologies, which supports management of data and information at each step of the experimental lifecycle. This framework will enable researchers to leverage the large scale of glycoproteomics …

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Exploration Of Iron And Cobalt Core-Shell Nanoparticles Via Thermal And Microwave Polyol Synthesis, Hope M. Klukovich Jan 2006

Exploration Of Iron And Cobalt Core-Shell Nanoparticles Via Thermal And Microwave Polyol Synthesis, Hope M. Klukovich

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Thermal and microwave polyol methods were investigated in the synthesis of various iron and cobalt core-shell nanoparticles. The reaction involved 1 mmol of an Fe+2 or Co+2 salt, bis-acetylacetanato [(Acac)2] iron (II), cobalt (Acac)2 or iron (II) acetate along with 1 mmol of a surfactant capping agent. The salt was reduced with 2 mmol of a 1,2 diol. When 1,2-hexadecanediol solid was used as a reducing agent, it was dissolved along with the metal salt and capping agent in octyl ether. When 1,2-hexanediol liquid was used as the reducing agent, it was also the solvent, and octyl ether …

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Feasibility Analysis Of The Strontium Ratio Obtained From Pennsylvanian Chondricthian Dentary, Cullen John Erbacher Jan 2006

Feasibility Analysis Of The Strontium Ratio Obtained From Pennsylvanian Chondricthian Dentary, Cullen John Erbacher

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This research was undertaken to determine the amount of time between transgressive and regressive sequences. One of the methods used to determine the amount of missing time in an unconformity is the 87Sr / 86Sr ratio. The 87Sr / 86Sr ratio will be high around brackish and freshwater environments while it will be lower in open marine conditions. Limestones and their constituent parts are susceptible to diagenetic processes that can contaminate or obliterate isotope values contained within the rocks. The purpose of this research was to discover if reliable isotope information could be pulled from Pennsylvanian aged shark teeth. Nine …

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Pyrrole Carboxamides As Potential Carbonic Anhydrase Inhibitors, Nishrin Ismailbhai Marketwala Jan 2006

Pyrrole Carboxamides As Potential Carbonic Anhydrase Inhibitors, Nishrin Ismailbhai Marketwala

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Carbonic anhydrases (CAs) are metalloenzymes that catalyze the reversible interconversion of CO2 and bicarbonate. We recently initiated a screen of a broad range of indoles and pyrroles possessing acyl-, carboxyl-, amido-, sulfonyl-, sulfamyl- and oxime- functionalities as potential inhibitors of á-CA II isozyme. As slight inhibition was observed in the case of 2-carboxamido-1-(phenylsulfonyl)pyrrole, and aware that pyrrole carboxamide derived sulfonamides had been previously demonstrated to possess CA inhibition, we sought to prepare a series of 1-(phenylsulfonyl)pyrrole-2-carboxamides but lacking a sulfonamide moiety to ascertain if the activity in our case might be due to a hitherto unrecognized pyrrole pharmacophore. To this …

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The Modeling Of Solubility, Frank Christopher Campanell Jan 2006

The Modeling Of Solubility, Frank Christopher Campanell

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In this work the solubilities of gases in liquids and liquids in liquids were modeled using both physical properties and topological descriptors of the solutes. Quantitative structure-activity relationship (QSAR) methods were employed to create single-linear regression (SLR) and multiple-linear regression (MLR) models of the solubilities. Factor analysis was employed to determine the number of significant factors present in the solubilities. The solubilities of monoalcohols in water, halogenated alkanes in water, gases in water, gases in alkanes, and gases in alcohols were examined and modeled.

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Wright State University College Of Engineering And Computer Science Bits And Pcs Newsletter, Volume 22, Number 4, January 2006, College Of Engineering And Computer Science, Wright State University Jan 2006

Wright State University College Of Engineering And Computer Science Bits And Pcs Newsletter, Volume 22, Number 4, January 2006, College Of Engineering And Computer Science, Wright State University

BITs and PCs Newsletter

A ten page newsletter created by the Wright State University College of Engineering and Computer Science that addresses the current affairs of the college.

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A Computational Framework For Analyzing Chemical Modification And Limited Proteolysis Experimental Data Used For High Confidence Protein Structure Prediction, Paul E. Anderson Jan 2006

A Computational Framework For Analyzing Chemical Modification And Limited Proteolysis Experimental Data Used For High Confidence Protein Structure Prediction, Paul E. Anderson

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Prediction of protein tertiary structure based on amino acid sequence is one of the most challenging open questions in computational molecular biology. Experimental methods for protein structure determination remain relatively time consuming and expensive, and are not applicable to all proteins. While a diverse array of algorithms have been developed for prediction of protein structure from amino acid sequence information, the accuracy and reliability of these methods are not yet comparable to experimental structure determination techniques. Computational models of protein structure can, however, be improved by the incorporation of experimental information. Relatively rapid and inexpensive protein modification experiments can be …

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Investigating The Male-Driven Evolution Hypothesis Using Human AluRepeat Elements, Sridhar Ramachandran Jan 2006

Investigating The Male-Driven Evolution Hypothesis Using Human AluRepeat Elements, Sridhar Ramachandran

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Thousands of copies of short interspersed repeats (SINEs) are scattered essentially ran-domly through the human genome. Although copies of each repeat subfamily are identical at the time of their insertion, they become subject to individual substitutions after insertion. As the relative time of insertion is known for many of these repeats, such "junk DNA" can be used to provide a sizeable number of time-series data points for studying substitution effects in a variety of genomic contexts. This dissertation specifically discusses the usefulness of the Alufamily of SINE repeats towards addressing open problems in genomics, population genetics, and biology in …

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Geostatistical Characterization Of Heterogeneity In The Aberjona River Aquifer, Woburn, Massachusetts, James Ralph Damico Jan 2006

Geostatistical Characterization Of Heterogeneity In The Aberjona River Aquifer, Woburn, Massachusetts, James Ralph Damico

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Ground water flow and contaminant transport patterns are largely controlled by the distribution of high- and low-permeability sediments. Therefore, an accurate description of the aquifer architecture is paramount to producing a representative ground water model. Models of contaminant fate and transport in the aquifer near Woburn, Massachusetts, have previously been created by others using a deterministic approach. As a complement to these prior studies, the proportions, geometry, and juxtaposition of the different lithofacies of the aquifer were statistically characterized for developing stochastic models for the aquifer system. The descriptions of lithology from boreholes were separated into eleven categories based primarily …

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Electronic Properties Of Silicon-Based Nanostructures, Gian Giacomo Guzman-Verri Jan 2006

Electronic Properties Of Silicon-Based Nanostructures, Gian Giacomo Guzman-Verri

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We have developed a new unifying tight-binding theory that can account for the electronic properties of recently proposed Si-based nanostructures, namely, Si graphene-like sheets and Si nanotubes. We considered the sp2s* and sp3 models up to first- and second-nearest neighbors, respectively. Our results show that the corresponding Si nanotubes follow the so-called Hamada's rule. Comparison to a recent ab initio calculation is made.

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