Physical Sciences and Mathematics Commons^™

Glyde - An Expressive Xml Standard For The Representation Of Glycan, Satya S. Sahoo, Christopher Thomas, Amit P. Sheth, Cory Andrew Henson, William S. York

Kno.e.sis Publications

The amount of glycomics data being generated is rapidly increasing as a result of improvements in analytical and computational methods. Correlation and analysis of this large, distributed data set requires an extensible and flexible representational standard that is also ‘understood’ by a wide range of software applications. An XML-based data representation standard that faithfully captures essential structural details of a glycan moiety along with additional information (such as data provenance) to aid the interpretation and usage of glycan data, will facilitate the exchange of glycomics data across the scientific community. To meet this need, we introduce GLYcan Data Exchange (GLYDE) …

The "Best K" For Entropy-Based Categorical Data Clustering, Keke Chen, Ling Liu

Kno.e.sis Publications

With the growing demand on cluster analysis for categorical data, a handful of categorical clustering algorithms have been developed. Surprisingly, to our knowledge, none has satisfactorily addressed the important problem for categorical clustering – how can we determine the best K number of clusters for a categorical dataset? Since categorical data does not have the inherent distance function as the similarity measure, traditional cluster validation techniques based on the geometry shape and density distribution cannot be applied to answer this question. In this paper, we investigate the entropy property of the categorical data and propose a BkPlot method for determining …

Wsdl-S: Adding Semantics To Wsdl, John Miller, Kunal Verma, Preeda Rajasekaran, Amit P. Sheth, Rohit Aggarwal, Kaarthik Sivashanmugam

Kno.e.sis Publications

Web services have primarily been designed for providing inter-operability between business applications. Current technologies assume a large amount of human interaction, for integrating two applications. This is primarily due to the fact that business process integration requires understanding of data and functions of the involved entities. Semantic Web technologies, powered by description logic based languages like OWL[1], aim to add greater meaning to Web content, by annotating the data with ontologies. Ontologies provide a mechanism of providing shared conceptualizations of domains. This allows agents to get an understanding of users’ Web content and greatly reduces human interaction for meaningful Web …

Cs 466/666: Introduction To Formal Languages, Thomas Sudkamp

Computer Science & Engineering Syllabi

CS 466/666 is an introduction to formal language and automata theory. In this course we will examine two methods for defining and recognizing languages: generating languages using grammars and accepting languages using finite state machines. Along with presenting the fundamentals of these two topics, the course will develop and investigate the relationships between these approaches. The focus will be two important families of languages, the regular languages and the context-free languages. We will exhibit the importance of the formal techniques by considering their application to the definition of programming languages and pattern matching. The text will be the second edition …

Cs 242-02: Introduction To Computer Science Iii, Praveen Kakumanu

Computer Science & Engineering Syllabi

This is the final course in the three course sequence "Introduction to Computer Science" offered by the Computer Science department, WSU. It focuses on building a number of abstract data types such as stacks, queues, trees, and tables. We continue to study the C++ object oriented concepts such as Inheritance, polymorphism, and template handling. We also start learning to analyze the complexity of algorithms in this course.

Cs 240-02: Introduction To Computer Science I, Dale E. Nelson

Computer Science & Engineering Syllabi

No abstract provided.

Cs 214-01: Object Oriented Programming, Roddy Keish

Computer Science & Engineering Syllabi

No abstract provided.

Cs 209-01: Computer Programming For Business Ii, Dennis Kellermeier

Computer Science & Engineering Syllabi

CS 209 is the second of a two quarter sequence in programming for business students. It is required for Management Information Science majors. The courses are designed to help students achieve a high degree of facility in intermediate level programming.

Dlpconvert: Converting Owl Dlp Statements To Logic Programs, Boris Motik, Denny Vrandecic, Pascal Hitzler, York Sure, Rudi Studer

Computer Science and Engineering Faculty Publications

In the past few years, the W3C has been establishing standards for the fundamental building blocks of the Semantic Web. With RDF a common data model has been provided. A major step was the introduction of the ontology definition languages RDFS—offering very basic semantics—and the Web Ontology Language OWL As these standards are still very new, only a limited support of tools for inferencing and querying exists. Still, the availability of such tools will be crucial for the development of the Semantic Web.

Fly Through A Pig's Heart, Thomas Wischgoll

Computer Science and Engineering Faculty Publications

This exhibit enables you to go on a fantastic voyage through the blood stream. Based on a scan of a real pig’s heart the arterial blood vessels were modeled allowing you to navigate through the vascular system of this heart and explore the blood and its different particles.

Ceg 461/661-01: Object-Oriented Programming And Design, Thomas C. Hartrum

Computer Science & Engineering Syllabi

Study of object-oriented design and programming. Programming topics emphasize the core concepts of encapsulation, inheritance, polymorphism, and dynamic binding. Additional topics include class organization, software maintenance, and design of reusable components. There is a project to be implemented in a modern object-oriented language such as Java or C++.

Ceg 416-01: Matrix Computations, Daniel C. Lee

Computer Science & Engineering Syllabi

This course is a survey of numerical methods in linear algebra for application to problems in engineering and the sciences. Emphasis is on using modern software tools on high performance computing systems. This course covers the mathematics of linear equations, eigenvalue problems, singular value decomposition, and least squares. Material covered will be relevant to application areas such as structural analysis, heat transfer, neural networks, , mechanical vibrations, and image processing in biomedical engineering. A student should familiarize himself/herself with Matlab. All programming assignments will be done in Matlab. A basic knowledge of matrix algebra is required. Prerequisite: MTH 253 or …

Ceg 360/560-01: Digital System Design, Travis E. Doom

Computer Science & Engineering Syllabi

Design of digital systems. Topics include flip-flops, registers, counters, programmable logic devices, memory devices, register-level design, and microcomputer system organization. Students must show competency in the design of digital systems. 3 hours lecture, 2 hours lab. Prerequisite: CEG 260.

Ceg 860-01: Object-Oriented Programming, Krishnaprasad Thirunarayan

Computer Science & Engineering Syllabi

This course motivates the need for object-oriented programming, and studies, in detail, object-oriented programming techniques, languages, and technology. The lectures will focus on the foundations of OOP, while the student presentations will focus on the applications and extensions of Object Technology.

Semantic Web & Semantic Web Services: Applications In Healthcare And Scientific Research, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Ranking Complex Relationships On The Semantic Web, Boanerges Aleman-Meza, Christian Halaschek-Wiener, I. Budak Arpinar, Cartic Ramakrishnan, Amit P. Sheth

Kno.e.sis Publications

Industry and academia are both focusing their attention on information retrieval over semantic metadata extracted from the Web, and it is increasingly possible to analyze such metadata to discover interesting relationships. However, just as document ranking is a critical component in today's search engines, the ranking of complex relationships would be an important component in tomorrow's semantic Web engines. This article presents a flexible ranking approach to identify interesting and relevant relationships in the semantic Web. The authors demonstrate the scheme's effectiveness through an empirical evaluation over a real-world data set.

Taxaminer: An Experimentation Framework For Automated Taxonomy Bootstrapping, Vipul Kashyap, Cartic Ramakrishnan, Christopher Thomas, Amit P. Sheth

Kno.e.sis Publications

Construction of domain ontologies on the semantic web is a human and resource intensive process, efforts to reduce which are crucial for the Semantic Web to scale. We present a framework for automated taxonomy construction, that involves: (a) generation of a cluster hierarchy from a document corpus using statistical clustering and NLP techniques; (b) extraction of a topic hierarchy from this cluster hierarchy; and (c) assignment of labels to nodes in the topic hierarchy. Metrics for estimating topic hierarchy quality and parameters of an experimentation framework are identified. MEDLINE was the document corpus and MeSH thesaurus was the gold standard.

Tontogen: A Synthetic Data Set Generator For Semantic Web Applications, Matthew Perry

Kno.e.sis Publications

No abstract provided.

Effects Of Dissociative Recombination On The Composition Of Planetary Atmospheres, Jane L. Fox

Physics Faculty Publications

Because dissociative recombination (DR) reactions of molecular ions are often highly exothermic, in the thermospheres of the Earth and planets DR may be a source of translationally and internally excited fragments. DR is important, therefore, for thermospheric neutral heating; if the excited fragments radiate to space, however, DR may be also a source of thermospheric cooling. DR may produce metastable fragments, which may live long enough to participate in reactions that are not available to ground state species. It is rare, however, for DR to be a significant source of minor species in their ground states. An exception appears to …

Computational Technique For Improvement Of The Position-Weight Matrices For The Dna/Protein Binding Sites, Naum I. Gershenzon, Gary D. Stormo, Ilya P. Ioshikhes

Physics Faculty Publications

Position-weight matrices (PWMs) are broadly used to locate transcription factor binding sites in DNA sequences. The majority of existing PWMs provide a low level of both sensitivity and specificity. We present a new computational algorithm, a modification of the Staden–Bucher approach, that improves the PWM. We applied the proposed technique on the PWM of the GC-box, binding site for Sp1. The comparison of old and new PWMs shows that the latter increase both sensitivity and specificity. The statistical parameters of GC-box distribution in promoter regions and in the human genome, as well as in each chromosome, are presented. The majority …

C And C+ In The Venusian Thermosphere/Ionosphere, Jane L. Fox, L. J. Paxton

Physics Faculty Publications

We have constructed standard low and high solar activity models of the Venus thermosphere, which take into account revised rate coefficients for production and loss processes for C and C⁺, high-resolution cross sections for photodissociation of CO, and recent solar fluxes from the Solar 2000 v1.24 and v2.22 models of Tobiska [2004]. Among the most important changes is the inclusion of the branching ratio for the channel of dissociative recombination of CO₂⁺ that produces C + O₂, which has been measured recently by Seiersen et al. [2003]. We find that unlike Mars, where the …

Electronic To Vibrational Energy Transfer From Cl* (3 2P1/2) To N2O(Ν1): Failure Of A Simple Kinetic Mechanism, Brian Brumfield

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Experimental kinetic studies were carried out examining the electronic to vibrational (E-V) energy transfer from spin-orbit excited Cl*(3 ²P_1/2 , 882 cm^-1) to N₂O(ν₁) (symmetric stretch 1285 cm^-1). All studies were carried out in the gas phase at room temperature (298 ± 2 K). Cl* was generated by pulsed laser photolysis of ICl at 532 nm in the presence of various mixtures of N₂O, ICl,Ar, and SO₂. Time-resolved IR signals of N₂O(ν₁) fluorescence at 7.8 μm were analyzed to obtain rate coefficients …

Pattern Recognition Via Machine Learning With Genetic Decision-Programming, Carl C. Hoff

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In the intersection of pattern recognition, machine learning, and evolutionary computation is a new search technique by which computers might program themselves. That technique is called genetic decision-programming. A computer can gain the ability to distinguish among the things that it needs to recognize by using genetic decision-programming for pattern discovery and concept learning. Those patterns and concepts can be easily encoded in the spines of a decision program (tree or diagram). A spine consists of two parts: (1) the test-outcome pairs along a path from the program's root to any of its leaves and (2) the conclusion in that …

Bismuth Triflate Catalyzed Friedel-Crafts Acylations Of Sydnones, Jennifer Ann Fisher

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In the present work, suitably functionalized arylsydnones were used to synthesize a variety of 4-acylsydnones and diacyl sydnones, both as potential precursors to novel sydnoquinolines.The approach to the diacyl species is based on the discovery that activated sydnonesbrominate in both the 4 position of the sydnone ring and on the phenyl ring. Thus, it seemed likely that Friedel-Crafts reactions on an activated sydnone would give diacylated species for McMurray coupling to sydnoquinolines. Friedel-Crafts acylations on the 4 position of the sydnone ring have been achieved in high yields using 4 equivalents of various alkyl anhydrides, 25 mol % of bismuth …

Multivariate Analysis Of Prokaryotic Amino Acid Usage Bias: A Computational Method For Understanding Protein Building Block Selection In Primitive Organisms, Douglas Whitmore Raiford Iii

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Organisms expend a significant fraction of their overall energy budget in the creation of proteins, particularly for those that are produced in large quantities. Recent research has demonstrated that genes encoding these proteins are shaped by natural selection to produce the proteins with low cost building blocks (amino acids) whenever possible. The negative correlation between protein production rate and their energetic costs has been established for two bacterial genomes: Escherichia coli and Bacillus subtilis. This thesis provides scientific validation of this theory by automating the analysis and extending the research to additional genomes. Investigations into building block selection are highly …

Nichtmonotone, Neuro-Symbolische Und Begriffliche Wissensverarbeitung, Pascal Hitzler

Computer Science and Engineering Faculty Publications

Diese Schrift dient dem Bericht uber die Hauptaspekte meiner Forschertatigkeit an der TU Dresden seit der Promotion. In diesen dreieinhalb Jahren war es mein Bestreben, selbststandig aktuelle, theoretisch fundierte und anwendungsbezogene Fragestellungen zu entwickeln und zu verfolgen.

Naturgemaß war meine Forschung in dieser Zeit vor allem zu Anfang sehr explorativ. Meine Suche konzentrierte sich dabei auf das Herausarbeiten theoretischer Zusammenhange. Ob ich einen Ansatz dann weiterverfolgte entschied sich anschließend aufgrund einer Evaluation aus angewandter Sicht.

Die in dieser Schrift dargestellten Forschungsansatze gedenke ich in Zukunft fortzufuhren. Sie bilden die Keimzellen fur langfristig angelegte angewandte und theoretische Untersuchungen. Ich werde in …

As-Doped P-Type Zno Produced By An Evaporation/Sputtering Process, David C. Look, G. M. Renlund, R. H. Burgener, J. R. Sizelove

Physics Faculty Publications

Strongly p-type ZnO is produced by the following sequence of steps: (1) evaporation of Zn₃As₂ on a fused-quartz substrate at 350 °C; and (2) sputtering of ZnO with substrate held at 450 °C. The electrical characteristics include: resistivity of 0.4 Ω cm, a mobility of 4 cm²∕V s, and a hole concentration of about 4×10¹⁸ cm⁻³. This resistivity is among the best (lowest) ever reported for p-type ZnO. Secondary-ion mass spectroscopic analysis gives an average As concentration about 5×10¹⁹ cm⁻³, and a simple one-band fit of the …

Micro-Auger Electron Spectroscopy Studies Of Chemical And Electronic Effects At Gan-Sapphire Interfaces, X. L. Sun, S. T. Bradley, G. H. Jessen, David C. Look, Richard J. Molnar, L. J. Brillson

Physics Faculty Publications

We have used cross-sectional micro-Auger electron spectroscopy (AES), coupled with micro-cathodoluminescence (CLS) spectroscopy, in a UHV scanning electron microscope to probe the chemical and related electronic features of hydride vapor phase epitaxy GaN/sapphire interfaces on a nanometer scale. AES images reveal dramatic evidence for micron-scale diffusion of O from Al₂O₃ into GaN. Conversely, plateau concentrations of N can extend microns into the sapphire, corresponding spatially to a 3.8 eV defect emission and Auger chemical shifts attributed to Al-N-O complexes. Interface Al Auger signals extending into GaN indicates AlGaN alloy formation, consistent with a blue-shifted CLS local interface …

Wright State University College Of Engineering And Computer Science Bits And Pcs Newsletter, Volume 21, Number 3, November 2004, College Of Engineering And Computer Science, Wright State University

BITs and PCs Newsletter

An eight page newsletter created by the Wright State University College of Engineering and Computer Science that addresses the current affairs of the college.

Student Fact Book, Fall 2004, Twenty-Eighth Annual Edition, Wright State University, Office Of Student Information Systems, Wright State University

Wright State University Student Fact Books

The student fact book has general demographic information on all students enrolled at Wright State University for Fall Quarter, 2004.