Physical Sciences and Mathematics Commons^™

Naïve Bayes And Similarity Based Methods For Identifying Computer Users Using Keystroke Patterns, Shrijit S. Joshi

Doctoral Dissertations

In this dissertation, we present two methods for identifying computer users using keystroke patterns. In the first method "Competition between naïve Bayes models for user identification," a naïve Bayes model is created for each user. In the training phase of this method, the model of a user is trained using maximum likelihood estimation on the key press latency values extracted from the texts typed by the user. In the user identification phase of this method, for each user we determine the probabilistic likelihood that the typed text belongs to a user. Finally, the typed text is assigned to the user …

The Role Of Stochastic Resonance And Physical Constraints In The Evolution Of Foraging Strategy, Nathan Daniel Dees

Doctoral Dissertations

"This work represents a detailed study of the optimization of this process: foraging within a single, finite food patch for a limited amount of time. The work is an example of the computational algorithms of statistical physics being applied to the ecological field of foraging behavior. The analysis begins with an examination of the probability distributions observed in the movement parameters of the zooplankton, Daphnia. While foraging, these small aquatic organisms stochastically choose movement parameters with particular levels of variation, or noise, which are similar across several species. Here, related simulations consistently show that these noise levels may be adjusted …

F₂-Isoprostanes Study After Exposure To Selected Nanoparticles By Liquid Chromatography/Tandem Mass Spectrometry And Investigation Of Nanoparticles On The Cytotoxicity Effect Of Arsenic In Vitro, Xiaoqian Liu

Doctoral Dissertations

"Nanopartices as a new class of materials found their applications in industry, aerospace, clinical diagnosis and cancer therapy. Recently, the health effects of nanoparticles have caused people great concerns. This dissertation studies the mechanisms of nanoparticle cytotoxicity in human lung epithelial cells (A549). F₂-isoprostanes are novel reliable biomarkers for lipid peroxidation. In the first part of this work, total free F₂-isoprostanes were quantified by high performance liquid chromatography/mass spectrometry followed by the exposure of SiO₂ (15 nm), CeO₂ (20 nm), Fe₂O₃ (30 nm), and ZnO (70 nm) nanoparticles for 24 hours. For the first time, the results showed that F₂-isoprostanes …

The Kalman Filter On Time Scales, Nicholas J. Wintz

Doctoral Dissertations

"In this work, we study concepts in optimal control for dynamic equations on time scales, which unfies the discrete and continuous cases. After a brief introduction of dynamic equations on time scales, we will examine controllability and observability for linear systems. Then we construct and solve the linear quadratic regulator for arbitrary time scales. Here, we seek to find an optimal control that minimizes a given cost function associated with a linear system. We will find such an input under two different settings; when the final state is fixed and when it is free. Later, we extend these results to …

Triple Differential Measurements Of Single And Multiple Ionization Of Argon By Electron And Positron Impact, Jared M. Gavin

Doctoral Dissertations

"Singly, doubly, and triply differential measurements of single and multiple ionization of Ar by 1 keV positron and electron impact have been measured for projectile energy losses from 0 to 200 eV, scattering angles of 0° to ±5°, and electron emission angles from 45° to 135°. For single ionization, both projectiles show similar overall energy loss distributions but differ with respect to varying scattering angles. Triply differential yields for the electron emission demonstrate the binary and recoil features but the lobes are distorted because of extraction field effects plus variations in grid transmission and solid angle as a function of …

Structural And Magnetic Properties Of Manganites Pr1-XCa1+XMno4, Oxypnictides Cefeaso1-XFX, And Filled Skutterudite Pros4As12, Songxue Chi

Doctoral Dissertations

We present neutron scattering, with triple-axis and time-of-flight spectrometers, to study the structural and magnetic properties of the layered manganites Pr_1-xCa_1+xMnO₄ (PCMO), and to determine the crystalline electric field (CEF) levels in iron pnictides CeFeAsO_1-xF_x and filled skutterudite compound PrOs₄As₁₂.

For the single-layered manganites PCMO, four dopings (x=0.5, 0.45, 0.40 and 0.35) have been studied. At half-doping, the system first becomes charge- and orbital- ordered (CO/OO) near T_CO = 300 K and then develops CE-type antiferromagnetic (AF) order below T_N = 130 K. …

Explicit Methods In The Nuclear Burning Problem For Supernova Ia Models, Viktor Chupryna

Doctoral Dissertations

Most modern astrophysical problems such as supernova simulation require application of state-ofthe- art computational tools. Despite the fact that number of nuclei included in coupled simulations tends to be small, problems such as nuclear burning networks are often part of a large set of interconnected programs that require significant computing resources. Expansion of the nuclear reaction network to realistic sizes can easily make element and energy production the leading consumer of both time and memory in simulations. Therefore, in solving nuclear reaction networks coupled to (radiation) hydrodynamics in astrophysics simulations, the development of methods capable of improving on the traditional …

Adsorption Of Propane On The Magnesium Oxide (100) Surface And Synthesis Of Anodized Aluminum Oxide, Michael John Felty

Doctoral Dissertations

This work is divided into two parts: the adsorption of propane on the magnesium oxide (100) surface and the synthesis of anodized aluminum oxide. The adsorption properties of propane on the MgO (100) surface were investigated using high-resolution volumetric isotherm techniques and a computational study was accomplished using Materials Studio. From the adsorption work, the two-dimensional isothermal compressibility, the isosteric heat of adsorption, the differential enthalpy, and the differential entropy of adsorption can be calculated. Three distinct layers of propane were observed to form on the MgO (100) surface and it was determined that a phase transition occurs at 162 …

Molecular Hydrogen Adsorbed On Mgo (100) Surfaces: A Thermodynamic Study, Lillian Ruth Frazier

Doctoral Dissertations

The thermodynamics of molecular hydrogen adsorbed on MgO (100) surfaces has been examined using high resolution volumetric adsorption isotherm techniques. These studies were undertaken using highly perfect, narrow size distributed MgO nanocubes with essentially single (100) facet exposure and extremely high chemical purity. A narrowly spaced (in temperature) series of isotherms were performed between the temperatures of ~7K and the triple point (13.8 K) using H₂ and D₂ gas.

A minimum of five, and in some cases seven, discrete adsorption steps are clearly observed in each isotherm trace. Analysis of these data indicate that the monolayer film forms …

Sb-Corla: Schema-Based Constructivist Robot Learning Architecture, Yifan Tang

Doctoral Dissertations

This dissertation explores schema-based robot learning. I developed SB-CoRLA (Schema- Based, Constructivist Robot Learning Architecture) to address the issue of constructivist robot learning in a schema-based robot system. The SB-CoRLA architecture extends the previously developed ASyMTRe (Automated Synthesis of Multi-team member Task solutions through software Reconfiguration) architecture to enable constructivist learning for multi-robot team tasks. The schema-based ASyMTRe architecture has successfully solved the problem of automatically synthesizing task solutions based on robot capabilities. However, it does not include a learning ability. Nothing is learned from past experience; therefore, each time a new task needs to be assigned to a new …

Emergent Phenomena In Spatially Confined Manganites, Thomas Z. Ward

Doctoral Dissertations

Rare earth manganites exhibit colossal magnetoresistance (CMR). There is evidence that alloyed single crystal materials in this class can display electronic inhomogeneity in which areas with vastly different electronic and magnetic properties can form and coexist in phase separated domains ranging in size from a few nanometers to micrometers. This phase separation (PS) is of particular interest, as it has been suggested that it is the central feature that leads to CMR in manganites, the Mott transition in VO₂ and may play a role in high-TC superconductivity in cuprates. However there is debate as to its precise role.

The …

Scalable Graph Algorithms With Applications In Genetics, Yun Zhang

Doctoral Dissertations

Graph theoretical approaches have been widely used to solve problems arising in bioinformatics and genomic analysis. In particular, enumeration problems such as maximal clique and maximal biclique finding are cores for addressing many biological problems, such as the integration of genome mapping data. However, the enumeration problems may become computation and memory bot- tlenecks for genome-scale elucidation of biological networks due to their NP-hard nature and the huge memory requirements.

Therefore, this research is interested in developing exact, scalable, and efficient algorithms for these biological problems. The Clique Enumerator including a maximal clique enumeration algo- rithm and its parallel …

A Socioeconomic Study Of The Non-Industrial Private Forest Landowner Wood Supply Chain Link In The Cumberland Plateau Region Of Tennessee, Kevin Patrick Hoyt

Doctoral Dissertations

The Cumberland Plateau in Tennessee currently is experiencing widespread forest parcelization and changes in species composition as a result of changes in land use and ownership. These changes can be attributed partially to industrial forest land divestiture, the lingering effects of the 1998 – 2002 Southern Pine Beetle (SPB) epidemic, and expanding development due to increasing population growth. The region has recently become a focus of debate concerning land use change, land management practices, and the effects on biodiversity.

A stratified random sample of 1600 Nonindustrial Private Forest (NIPF) landowners owning 40 or more acres of forestland were surveyed obtaining …

Forestry Extension In Tennessee: Comparing Traditional And Web-Based Program Delivery Methods, Samuel Wayne Jackson

Doctoral Dissertations

As the traditional forestry Extension clientele in Tennessee changes, Extension professionals need to adapt and deliver programs in such a way as to reach the maximum audience while ensuring the educational benefit of the program and remaining within budget. The development of the Internet and associated web-based programs presents a new tool by which Extension professionals can develop and deliver educational programs to clientele.

This study compared two Extension program delivery methods, web-based and traditional field-based. A series of field workshops were held and participants were surveyed. From these field workshops, a web-based program was developed and was marketed to …

Assessing The Tree-Ring Oxygen Isotope Hurricane Proxy Along The Atlantic And Gulf Coastal Seaboards, Usa, Whitney L. Nelson

Doctoral Dissertations

A recent increase in hurricane activity has put coastal populations at risk. To better understand hurricane activity, it is necessary to look beyond the modern instrumental record, using proxy records to establish modes of past variability. The utility of a newly developed tree-ring oxygen isotope proxy is further assessed. I present oxygen isotope time series from three sites: Francis Marion and Sandy Island, South Carolina and Eglin Air Force Base, Florida. Proxy results are verified against the instrumental record of hurricane occurrence. The sites record similar percentages (45% for Francis Marion and Sandy Island, 63% for Eglin Air Force Base) …

New Carbon-Carbon Bond Forming Reactions Mediated By Boron And Transition Metal Halides, Travis R. Quick

Doctoral Dissertations

This dissertation summarizes the recent use of boron and transition metal halides to form new carbon-carbon bonds. Several novel reactions have been discovered. These include the haloallylation of aryl aldehydes with boron trihalide; alkyne-aldehyde couplings mediated by boron trihalide to give either (Z,Z)-1,5-dihaloalkenes or (Z,E)-1,5- dihaloalkenes; dehydroxylation of benzylic alcohols and in situ generated benzylic alcohol salts with iron(III) chloride and triethylsilane to afford diarylmethanes; and, the alkenylation of allylic, benzylic, and propargylic alcohols with phenylacetylenes and titanium(IV) halide. The results of these studies strongly imply a cationic mechanism. The reaction methodology of the research described herein can be characterized …

Collective Behavior Of Interacting Magnetic Nanoparticles, Noppi Widjaja

Doctoral Dissertations

In the past, Low Dimensional Materials by Design group at ORNL in collaboration with students from the University of Tennessee, have successfully tailored and studied magnetic nanostructures in 2D, 1D and 0D spatial confinement on Cu(111) substrates. They observed a striking collective ferromagnetic long-range order in Fe-nanodots on Cu(111) surface which can be stabilized through the indirect exchange interaction mediated by the substrate. This type of magnetic interaction was expected to have little effect on promoting a global ferromagnetic order in a randomly distributed dot assembly. It is for certain that we need a better understanding of the relative roles …

Optimal Control Of Epidemic Models Involving Rabies And West Nile Viruses, Timothy Joseph Clayton

Doctoral Dissertations

This research considers the application of Optimal Control theory to minimize the spread of viral infections in disease models. The population models under consideration are systems of ordinary differential equations and represent epidemics arising due to either rabies or West Nile virus. Optimal control strategies are analyzed using Pontryagin’s Maximum Principle and illustrated based upon computer simulations.

The first model describes a population of raccoons and its interaction with the rabies virus, thus dividing the animals into four classes: susceptible, exposed, immune, and recovered (SEIR). The model includes a birth pulse during the spring of the year and …

Integrated Mining Of Feature Spaces For Bioinformatics Domain Discovery, Pradeep Chowriappa

Doctoral Dissertations

One of the major challenges in the field of bioinformatics is the elucidation of protein folding for the functional annotation of proteins. The factors that govern protein folding include the chemical, physical, and environmental conditions of the protein's surroundings, which can be measured and exploited for computational discovery purposes. These conditions enable the protein to transform from a sequence of amino acids to a globular three-dimensional structure. Information concerning the folded state of a protein has significant potential to explain biochemical pathways and their involvement in disorders and diseases. This information impacts the ways in which genetic diseases are characterized …

A Hyperbolic Two-Step Model Based Finite Difference Method For Studying Thermal Deformation In Three-Dimensional Micro Spheres Exposed To Ultrashort-Pulsed Lasers, Pan Wang

Doctoral Dissertations

Ultrashort-pulsed lasers with pulse durations of the order of sub-picoseconds to femtoseconds possess the capabilities in limiting the undesirable spread of the thermal process zone in a heated sample. Because of this, ultrashort-pulsed lasers have been attracting worldwide interest in science and engineering. The success of ultrashort-pulsed lasers in real application relies on: (1) well characterized pulse width, intensity and experimental techniques; (2) reliable microscale heat transfer models; and (3) prevention of thermal damage. Laser damage induced by ultrashort-pulsed lasers occurs after the heating pulse is over, since the pulse duration time is extremely short and the heat flux is …

Landscape Level Dynamics In An Endangered Mountain Ecosystem, Northern Rocky Mountains, U.S.A., Saskia L. Van De Gevel

Doctoral Dissertations

The purpose of this dissertation research was to investigate the extent of natural and anthropogenic impacts on declining whitebark pine communities. My research used dendroecology to study multicentury changes in these threatened communities to assess current and past forest dynamics and the overlapping effects of white pine blister rust, mountain pine beetle, and climate change in the northern Rocky Mountains.

I created whitebark pine (host) and subalpine fir (nonhost) chronologies and collected species composition, stand structure, and forest health data in sites along a latitudinal transect through the Rocky Mountains in western Montana. The standstructure data indicate over 70% of …

A Measurement Of Open Charm Using Single Muons At Forward Angles For P+P Collisions At Center Of Mass Energy 200 Gev, Donald Eric Hornback

Doctoral Dissertations

This dissertation presents the measurement of single muons from the semi-leptonic decay of heavy quark mesons (charm and bottom) in √s=200 GeV p+p collisions at the Relativistic Heavy Ion Collider at Brookhaven National Lab. The data were recorded in 2005 by the PHENIX experiment. The PHENIX muon spectrometer measures particles at forward angles from approximately 15º to 33º relative to the beam line in both forward and backward directions.

A new analysis technique was developed to estimate and subtract backgrounds from light hadrons in a statistical fashion to reveal the yield of heavy flavor single muons. The yield of single …

Collision-Induced Dissociation Of Multiply-Charged Anions, Nasrin Mirsaleh Kohan

Doctoral Dissertations

Electrospray ionization has proven to be a powerful method for the study of multiply-charged-anions (MCA) in the gas-phase. Stability of the MCA toward ionic fragmentation and electron detachment has attracted wide interest. The stability of dianions is due to the “repulsive Coulomb barrier” to the addition or removed of an excess electron to a negative ion. The repulsive Coulomb barrier (RCB) is primarily the result of a long-range Coulomb repulsion and the short-range polarizibility attraction between an electron and a negative ion. The RCB can render unbound MCAs metastable or add stability to bound MCAs. In this dissertation, a collision-induced …

Scalable, Data- Intensive Network Computation, Huadong Liu

Doctoral Dissertations

To enable groups of collaborating researchers at different locations to effectively share large datasets and investigate their spontaneous hypotheses on the fly, we are interested in de- veloping a distributed system that can be easily leveraged by a variety of data intensive applications. The system is composed of (i) a number of best effort logistical depots to en- able large-scale data sharing and in-network data processing, (ii) a set of end-to-end tools to effectively aggregate, manage and schedule a large number of network computations with attendant data movements, and (iii) a Distributed Hash Table (DHT) on top of the generic …

Synthesis Of Two Thiol-Terminated Disaccharides And A Mannose-Branched Glycodendrimer, Chao Wang

Doctoral Dissertations

The glycocalix, a complex structure of lipids and glycoproteins, forms the cellular surface of all cells and serves to mediate a variety of events such as cell–virus recognition, cell–cell recognition, immunological response, metastasis, and fertilization. Moreover, the glycocalix is specific for a particular species, cell type, and developmental status. Alterations in the glycocalix have been found in association with many pathological conditions such as cancer and tuberculosis. Investigation of the interactions between the glycocalix and its associated proteins will lead to a fundamental understanding of these important processes.

Multivalent interactions are characterized by the simultaneous binding of multiple ligands on …

Advancing Data Analysis For Spectroscopic Imaging By Combining Wavelet Compression With Chemometrics, Robert Daryl Luttrell

Doctoral Dissertations

Spectroscopic imaging is a vital tool for studying heterogeneous samples such as bacteria and tissue. Its ability to acquire spatially resolved information allows for identification and classification of the various constituents within a sample. Spectroscopic imagers quickly acquire thousands to tens of thousands of spectra per measurement. These data are often arranged in the form of a 3-dimensional (3D) data cube which contains two spatial dimensions and one spectral dimension. This large amount of data is beneficial for gaining a thorough understanding about the distributions of chemical information. If too little information is measured, important chemical behavior may be overlooked. …

The Applications Of The Tracer Particle Method To Multi-Dimensional Supernova Simulations, Ching-Tsai Lee

Doctoral Dissertations

A new tracer particle implementation has been developed for the 2D supernova code ”CHIMERA”. 2D supernova simulations have been performed for a wide range of progenitors, between 10 and 25 solar mass. In the case of the Heger12 model, we have obtained a successful explosion. Analysis of the tracer particle data generated by supernova simulations reveals the aspherical geometry of the ejecta. Using the hydrodynamic trajectories provided by the tracer particles, we have performed the nucleosynthesis calculations in the post processing approximation, including the effects of neutrino captures, to understand the nucleosynthesis consequences of these models.

The Rational Design And Lithographic Fabrication Of Surface Enhanced Raman Spectroscopy Substrates, Jenny M. Oran

Doctoral Dissertations

The analytical capabilities of surface-enhanced Raman spectroscopy (SERS) reside in the performance characteristics of the SERS-active substrate. Signal enhancement observed in SERS is attributable to the presence of noble metal nanostructures on substrate surfaces. The rational design and control of variables such as shape and size, and distribution, density, and spacing of these nanostructures can lead to substrates that have greater analytical sensitivity and yield more reproducible enhancement. Through systematic control of the morphology of our SERS substrates, we have created ordered periodic arrays as well as random aggregates of nanoscale particles using electron beam lithography (EBL). A unique aspect …

Addressing Challenges In A Graph-Based Analysis Of High-Throughput Biological Data, Andy D. Perkins

Doctoral Dissertations

Graph-based methods used in the analysis of DNA microarray technology can be powerful tools in the elucidation of biological relationships. As these methods are developed and applied to various types of data, challenges arise that test the limits of current algorithms. These challenges arise in all phases of data analysis: data normalization, modeling biological networks, and interpreting results. Spectral graph theory methods are investigated as means of threshold selection, a key step in constructing graphical models of biological data. Also important in constructing graphs is the selection of an appropriate gene-gene similarity metric, and an overview of similarity profiles for …

Generating Genetic Resources For Phytophthora Capsici (L.) And Studying P. Capsici And Phytophthora Hybrids In Peru, Oscar Pietro Hurtado-Gonzales

Doctoral Dissertations

The genus Phytophthora includes more than 90 described species infecting over 1000 plant species. Population studies were conducted to investigate the survival and spread of P. capsici in the Peruvian coastal region. A total of 227 P. capsici isolates, recovered at widely distant localities from 2005-2007, were fingerprinted with AFLPs and SNP genotyping. A clonal population (PcPE-1) represented by 221 isolates was found to be distributed throughout the country. Atypical isolates of P. nicotianae were isolated from loquat trees in Peru and nuclear (internal transcribed spacer [ITS], the phenol acid carboxylase gene, and AFLPs) and mitochondrial genotyping (cytochrome oxidase gene …