Physical Sciences and Mathematics Commons^™

Superstable Semigroups, Stephanie Olsen

Honors Theses

No abstract provided.

Synthesis, Isolation, And Characterization Of Potentially Carcinogenic Arginine-Based Heterocyclic Amines, Zachary Reichert

Honors Theses

Previous research demonstrates that meat cooked at high temperatures produces heterocyclic amines (HCAs)—a class of carcinogenic molecules—from burned creatin(in)e and amino acids. However, research performed in our lab, as well as in the peer-reviewed literature, suggests that substituting arginine for creatin(in)e may lead to HCA formation. Arginine is structurally similar to creatin(in)e and can be found abundantly in soy-based food products. Therefore, we have burned arginine and phenylalanine to investigate the potential formation of arginine-based HCAs. The present study attempts to isolate and characterize these potential arginine-HCAs.

Evaluating The Efficacy Of Educational Games In Promoting Interest And Understanding Of Gravitational Wave Physics, Jonathan Wheeler

Honors Theses

The LIGO Scientific Collaboration Education and Public Outreach group seeks to ameliorate the lack of public understanding of gravitational wave physics. One such effort is Black Hole Pong, a remake of the 1972 arcade classic developed by researchers at University of Birmingham, UK. Black Hole Pong differs from other educational games in that it stretches the laws of physics to make the user experience more exciting. Another effort has been my own work in developing a game called Chickens in Space where players can create mass, which coalesces and eventually forms black holes, which serve as obstacles to the players. …

Density Functional Theory Calculations On The Doping Sequence Of Mnxfen(1-X)Ge, Jordan C. Ball

Honors Theses

No abstract provided.

Making Meyers Clear: An Exploration Of The Chemistry And Art Of Ceramic Glazes, Sara Catherine Williams

Honors Theses

For both seasoned potters and students, looking at a line of unglazed bisque-ware can be a terrifying moment. Terrifying because you know that if you choose the wrong glazes, all of your hard work up until now could be wasted. The form of any clay creation, be it functional or artistic, is equal in importance with the glaze. Bad forms cannot be covered with good glazes, but good forms may be ruined with them. It is through the pairing of the two that a truly beautiful piece is made.

During my undergraduate years and much of my life I have …

Pharmaceutical And Personal Care Products Concentrations In The Belgrade Lakes: A Possible Threat To Aquatic Ecosystems And Human Health, Serena Haver

Honors Theses

Pharmaceuticals and active ingredients from personal care products (PPCPs) include prescription and over-the-counter drugs, sunscreen, fragrances, and soaps. Recently researchers have detected PPCPs in surface waters, posing a threat to aquatic biota and human health. These compounds can enter the environment through dumping, direct excretion, or sewage effluent streams. We tested 14 water samples from East Pond, Great Pond, and Long Pond in Maine for the presence of 23 different PPCPs. Of those, we only detected significant levels of caffeine, 1,7-dimethylxanthine, and amphetamine all below 1µg/L. There were no significant differences between any of the three lakes for any of …

Phenanthrene...With A Twist!, Nicholas S. Kim

Honors Theses

The twisted and sterically hindered 4,5-dibromophenanthrene, was synthesized from 2,6-dibromoiodobenzene in a four-step pathway, or from 1,3-dibromobenzene in a three-step pathway. Then, 4,5-dibromophenanthrene was subjected to a Kumada coupling, leading to the synthesis of an even more twisted 4-bromo-5-tert-butylphenanthrene. Computational studies using density functional theory were performed to compare experimental and theoretical characteristics of these compounds, such as dihedral angles, optimized structures, and transition state energy barriers.

The purpose of these experiments is to fill gaps in chemical databases, synthesize more pronounced twists in normally planar phenanthrene molecules, and to ultimately synthesize 4,5-bis-tert-butylphenanthrene, which may have …

Part I: Photochemical Generation Of Cyclohexyne From A Hydrocarbon Precursor Part Ii: A Triptycenyl Flower, Daniel Maurer

Honors Theses

Part I

Photolysis of phenanthrene-based methylenecyclopropane derivatives have previously been shown to generate alkylidenecarbenes, which readily rearrange to form alkynes. In this work, we show that photolysis of an analogous cyclic alkylidenecarbene precursor at ambi- ent temperature forms cyclohexyne via the putative cyclopentylidenecarbene, and can be trapped by dienes via a Diels-Alder reaction. Cyclohexyne and other strained cycloalkynes are of much interest to theoreticians and experimentalists alike. Results of coupled-cluster and DFT calculations on the potential energy surface of cyclopentylidenecarbene and the corresponding strained cyclohexyne are also presented. The photochemical generation of cy- clopentylidenecarbene, and thus cyclohexyne, from a hydrocarbon …

Using Genetic Algorithms To Evolve Artificial Neural Networks, William T. Kearney

Honors Theses

This paper demonstrates that neuroevolution is an effective method to determine an optimal neural network topology. I provide an overview of the NeuroEvolution of Augmenting Topologies (NEAT) algorithm, and describe how unique characteristics of this algorithm solve various problem inherent to neuroevolution (namely the competing conventions problem and the challenges associated with protecting topological innovation). Parallelization is shown to greatly speed up efficiency, further reinforcing neuroevolution as a potential alternative to traditional backpropagation. I also demonstrate that appropriate parameter selection is critical in order to efficiently converge to an optimal topology. Lastly, I produce an example solution to a medical …

Petrography, Mineralogy, And Geochemistry Of Greenish- And Reddish-Gray Siltstones Straddling The Vertebrate-Defined Permian–Triassic Boundary In South Africa, Jiawen Li

Honors Theses

The Permian–Triassic Mass Extinction (PTME) is considered the largest in Earth’s history, yet the terrestrial response is not well understood. The Karoo Basin, South Africa, hosts abundant exposures of terrestrial deposits that span the Permian– Triassic Boundary (PTB). The terrestrial PTB is defined by a turnover in vertebrate assemblage zones and has been associated with a transition from greenish-gray to reddish-gray siltstone. The current PTME model states that the siltstone color change is a reflection of aridification and eolian deposition, which is believed to represent rapid climate change directly linked with the event. Greenish- and reddish-gray siltstones were collected from …

The Roles Of Introduced Eucalyptus In The Conservation And Expansion Of Ethiopian Orthodox Church Forests In The Northern Ethiopian Highlands, Janice Liang

Honors Theses

Species of the genus Eucalyptus (common name eucalyptus) are widely planted all across Ethiopia – including on large areas of land previously allocated to food production. In recent decades eucalyptus has also increasingly been planted on lands around and within “church forests,” sacred groves of old-aged Afromontane trees surrounding Ethiopian Orthodox Tewahido churches. These revered holy sites have long been recognized for their cultural values and also for their ecosystem services – including their potential to support species conservation and restoration, as church forests are some of the only remaining sanctuaries for many of Ethiopia’s indigenous and endemic plant and …

The Impact Of Endocrine-Disrupting Chemicals On Wildlife Conservation, Eda Reed

Honors Theses

Endocrine-disrupting chemicals (EDCs), such as those from plastics and pesticides, have been hypothesized to affect wildlife populations. According to the U.S. National Institute of Environmental Health Sciences, EDCs ‘are chemicals that may interfere with the body’s endocrine system and produce adverse developmental, reproductive, neurological, and immune effects in both humans and wildlife.’ A growing number of studies suggest wildlife are being exposed to EDCs, but how EDCs affect wildlife health and wildlife conservation is less well-understood. Through scientific literature analysis and a survey of wildlife conservationists and practitioners, this study aims to determine the current state of knowledge and data …

Creating Color: Unearthing The Chemistry Of Ceramic Glazes, Jessica Mariah Hargis

Honors Theses

There is something magical about taking lumps of cold clay and turning them into a functional form. The transofrmation process is what first peaked my interest in ceramics. I turned this visual art form my junior year of college after being completely overwhelmed by my chemistry major. Not only did Ceramics 1 teach me basic hand building and surface design techniques, but it allowed me to literally pound out my stress. I've gained a strong adoration for ceramics because it relieves my stress and gives me the opportunity to express myself.

After taking Ceramics 1, enrolling in Ceramics 2 was …

Synthetic Flexibility Of A Bromopyrrole Ester Intermediate : Toward Novel Biologically Active Compounds, Scott Cameron Yeudall

Honors Theses

Compounds containing the pyrrole ring as a core structural motif continue to show significant biological activity, and both natural product derivatives and novel chemical scaffolds show potential for use as pharmaceuticals in treating a variety of cancers, infections, and inflammation. Given the widespread and important applications of compounds containing this motif, novel, rapid, and selective methods for the synthesis of multifunctional pyrroles is of some importance. Previous work in our group has utilized palladium-mediated Suzuki cross-coupling as a powerful tool for functionalizing activated bromopyrrole esters, generating structural analogues of bioactive natural products. We have also used a similar approach to …

An Examination Of The Cmb Large-Angle Suppression, Ellis Herman

Honors Theses

As shown by COBE­DMR and then by the Wilkinson Anisotropy Probe (WMAP), there exists an anomaly in the correlation function of the cosmic microwave background (CMB) radiation, namely that said correlation function is suppressed to zero on large angular scales. This observation conflicts with the prediction made by Lambda­CDM, the standard model of cosmology, indicating either necessary changes to the standard model or that our universe is a rare fluke within LCDM ­ such suppressions are seen in only about 0.3% of universes predicted by LCDM. To differentiate into which of these categories our universe falls, we have attempted to …

Cameron-Liebler Line Classes And Partial Difference Sets, Uthaipon Tantipongipat

Honors Theses

The work consists of three parts. The first is a study of Cameron-Liebler line classes which receive much attention recently. We studied a new construction of infinite family of Cameron-Liebler line classes presented in the paper by Tao Feng, Koji Momihara, and Qing Xiang (rst introduced in 2014), and summarized our attempts to generalize this construction to discover any new Cameron-Liebler line classes or partial difference sets (PDSs) resulting from the Cameron-Liebler line classes. The second is our approach to finding PDS in non-elementary abelian groups. Our attempt eventually led to the same general construction of PDS presented in John …

Structure-Function Relationships Affecting The Sensing Mechanism Of Monolayer-Protected Cluster Doped Xerogel Amperometric Glucose Biosensors, Luke T. Dipasquale

Honors Theses

The research conducted in the Leopold Bioanalytical and Nanomaterials Analytical Chemistry Lab prior to the summer of 2013 focused on the synthesis of a functional biosensor equipped with a nanoparticle network embedded in a xerogel film for the detection of glucose. Xerogel-based films featuring embedded glucose oxidase enzyme and doped with alkanethiolate-protected gold NPs, known as monolayer protected clusters (MPCs), exhibit significantly enhanced performance compared to analogous systems without NPs including higher sensitivity, faster response time, and extended linear/dynamic ranges.

The following presented research is a systematic study of the structure-function relationships critical to understanding the sensing mechanism of the …

Partitioning Groups With Difference Sets, Rebecca Funke

Honors Theses

This thesis explores the use of difference sets to partition algebraic groups. Difference sets are a tool belonging to both group theory and combinatorics that provide symmetric properties that can be map into over mathematical fields such as design theory or coding theory. In my work, I will be taking algebraic groups and partitioning them into a subgroup and multiple McFarland difference sets. This partitioning can then be mapped to an association scheme. This bridge between difference sets and association schemes have important contributions to coding theory.

Experimental And Computational Study Of Methylphenylvinylidene And Its Rearrangements, Xi Yang

Honors Theses

In this study, the synthesis and properties were explored of the compound methylphenylvinylidene (MPV), a vinylidene carbene with methyl and phenyl groups as substituents. A phenanthrene-based precursor, 1-(1-phenylethylidene)-1a,9b-dihydro-1H-cyclopropa[l]phenanthrene, was synthesized in three steps and was subjected to photolysis in C₆D₆ at ambient temperature. During photolysis, the MPV carbene rearranged into 1-phenylpropyne via a 1,2-phenyl shift, instead of 1,2-methyl shift, confirmed by photolysis of ¹³C-labeled precursor. This experimental result is consistent with computational results using the CCSD(T)/cc-pVTZ//B3LYP/6-31+G* method. The calculations suggest that the 1,2-phenyl shift in singlet carbene requires 3.8 kcal/mol to overcome …

Resonant Collisions Of Potassium Atoms, Philip Michael Adamson

Honors Theses

This thesis discusses an approach to excite potassium atoms to very highly excited states (Rydberg states), and then tune their energy levels to induce resonant collisions between atoms. Potassium gas is super-cooled to 1 mK and confined to a small volume in a magneto-optical trap. A 405 nm laser diode, electronically locked to a potassium vapor cell via Doppler free spectroscopy, excites these atoms from the 4s_1/2 state (ground state) to the 5p_3/2 state. A 978 nm laser then excites the 5p_3/2 to nd_3/2 or nd_5/2 transition, creating Rydberg atoms. Since there is no ground …

Missing The Trees For The Forest: The Socioecological Significance Of Dispersed Farmland Trees In Northern Ethiopia, Jacob A. Wall

Honors Theses

Scattered trees are prominent features in the agricultural landscape of the Ethiopian highlands. The dry Afromontane forests of the Amhara Region in northern Ethiopia have faced centuries of deforestation - the FAO estimates only 3% of the region is forested today. The remaining landscape has been largely converted into agricultural and grazing lands, with the exception of some limited government-protected lands, as well as thousands of small forest fragments left around Orthodox Churches (“church forests”). But while a growing body of scholarship has highlighted the ecological and cultural importance of church forests and other natural forest fragments, the roles of …

Real-Time Translation Of American Sign Language Using Wearable Technology, Jackson Taylor

Honors Theses

The goal of this work is to implement a real-time system using wearable technology for translating American Sign Language (ASL) gestures into audible form. This system could be used to facilitate conversations between individuals who do and do not communicate using ASL. We use as our source of input the Myo armband, an affordable commercially-available wearable technology equipped with on-board accelerometer, gyroscope, and electromyography sensors. We investigate the performance of two different classification algorithms in this context: linear discriminant analysis and k-Nearest Neighbors (k-NN) using various distance metrics. Using the k-NN classifier and windowed dynamic time …

Nonexistence Of Nonquadratic Kerdock Sets In Six Variables, John Clikeman

Honors Theses

Kerdock sets are maximally sized sets of boolean functions such that the sum of any two functions in the set is bent. This paper modifies the methodology of a paper by Phelps (2015) to the problem of finding Kerdock sets in six variables containing non-quadratic elements. Using a computer search, we demonstrate that no Kerdock sets exist containing non-quadratic six- variable bent functions, and that the largest bent set containing such functions has size 8.

Tablet Usage In Secondary Mathematics Education And Recommendations For Improving Its Effectiveness In The Classroom, Meghan T. Dwyer

Honors Theses

As part of my honor's thesis project at Assumption College, I have been researching the ways that teachers are currently using tablets in their secondary mathematics classrooms. My thesis compares the benefits and drawbacks of having tablets in classrooms, tablets for every student, or no tablets at all. In the spring, I collected survey feedback from mathematics teachers in four different local school districts. I analyzed the data in order to determine the ways tablets are being used in classrooms, the reasons preventing teachers from fully integrating tablets into their instruction, the impacts training has had on tablet use, and …

Effect Of 5-Hydroxymethylcytosine Modifications On Stability Of Vegf I-Motifs, Bethany Summerford

Honors Theses

DNA i-motifs are a secondary structure of DNA formed at low pH by internal folding of strands rich in cytosine. This study focuses on trying to determine if the DNA from the vascular endothelial growth factor (VEGF) promoter, which can form an i-motif, can be stabilized with the epigenetic modification to 5- hydroxymethylcytosine in four separate locations on the DNA strand, and to what extent the degree of stabilization depends on the location of the modification. Stability of the i-motif was determined by measuring pKa and melting point (Tm) of each VEGF modification using circular dichroism spectroscopy. The modified samples …

Statistical Analysis Of Arsenic Concentrations In Subsurface Soils At The University Of Mississippi Field Station, David Thomas Webb

Honors Theses

The purpose of this investigation is to determine how arsenic concentration varies in soils with respect to soil structures, grain size, soil type, and depth. The investigation was conducted at the University of Mississippi Field Station (UMFS). The UMFS is located in Abbeville, MS and is roughly 700 acres in size. It includes ponds and former agricultural fields, and lies within an internally draining basin. Seven boreholes were drilled using a direct push geoprobe and sampled. The cores obtained from the borings were then cut at one foot intervals, producing a total of 90 soil samples. Each sample was observed …

A Study On The Characterization And Implementation Of Tools For Advanced Ligo, Hunter Gabbard

Honors Theses

The Laser Interferometer Gravitational Wave Observatory (LIGO) is aimed at directly detecting gravitational waves, small perturbations or ripples in the fabric of space-time. Because of their extreme sensitivity, the LIGO detectors are affected by many sources of non-astrophysical noise. In the first part of this thesis we test a pipeline designed for the identification of short-duration noise transients, called Omicron. We first inject simulated noise waveforms in engineering run data from the LIGO detector in Livingston, Louisiana and then determine Omicron efficiency by attempting to recover these injections. In the second part of this thesis, we present a novel method …

Blue Cheese Cosmology: Lensing By Cosmic Strings, Jared Wofford

Honors Theses

The light bending effects around cosmic strings in universes with varying rates of expansion are investigated. A relationship between the angular deflection and the expansion rate is found. This is made possible by the Blue Cheese model, which is a generalization to a cylindrical realm of the Swiss Cheese model

Study Of An Active-State Cb1 Receptor Model And Jwh Compound Interactions To Predict New Emerging Synthetic Cannabinoids, Kelsey Leigh Pettus

Honors Theses

In recent years, a new class of compounds, called synthetic cannabinoids, have made their appearance in the market as a substitute for illegal marijuana or its constituent natural cannabinoids. These compounds, which are active at the same G- protein coupled receptors (GPCRS) as cannabinoids, are continuing to gain popularity because of the same cannabinoid-like effects they create. Though two cannabinoid receptors have been identified in humans, known as CB1 and CB2, synthetic cannabinoid activity at the CB1 receptor has been the focus of much research regarding synthetic cannabinoid ligand binding. In this study, the structure of the CB1 receptor is …

Conformational Analysis Of A Furan, Thiophene Alternating Π System, Laura Cline

Honors Theses

Organic materials with conjugated Ï€-electron networks are increasingly being studied as an alternative to inorganic semiconductors. In order to effectively transport charge as a semiconductor, the organic materials should maintain a planar conformation, exhibit Ï€ conjugation, and be rigid to rotational interconversion. Both furan and thiophene systems have been investigated as potential organic semiconductors but difficulties with solubility, synthesis, and effectiveness hampered these efforts. A novel furan-thiophene hybrid system that exhibits promising semiconducting properties is examined here. Full geometry optimizations and corresponding harmonic vibrational frequency computations were run on a diverse set of potential furan and thiophene oligomer structures using …