Open Access. Powered by Scholars. Published by Universities.®

Physical Sciences and Mathematics Commons

Open Access. Powered by Scholars. Published by Universities.®

2001

Discipline
Institution
Keyword
Publication
Publication Type
File Type

Articles 2191 - 2220 of 3030

Full-Text Articles in Physical Sciences and Mathematics

A Review Of The Different Methods For Assessing Standing Balance, Jacinta Browne, N. J. O'Hare Jan 2001

A Review Of The Different Methods For Assessing Standing Balance, Jacinta Browne, N. J. O'Hare

Articles

This paper is a review of the balance assessment methods currently used to evaluate standing balance. Most of the presently available instrumentation appears to be more suited to research laboratories than to routine clinical situations. Functional assessments of balance appear to be the quickest test to administer and do not require expensive equipment however only gross changes in balance can be detected making them suitable as a screening tool for identifying subject’s needing more thorough evaluation. Force platforms appear to be most suited balance assessment instrumentation to the clinical situation since it produces a real time display and can detect …


The Partial Evaluation Approach To Information Personalization, Naren Ramakrishnan, Saverio Perugini Jan 2001

The Partial Evaluation Approach To Information Personalization, Naren Ramakrishnan, Saverio Perugini

Computer Science Faculty Publications

Information personalization refers to the automatic adjustment of information content, structure, and presentation tailored to an individual user. By reducing information overload and customizing information access, personalization systems have emerged as an important segment of the Internet economy. This paper presents a systematic modeling methodology— PIPE (‘Personalization is Partial Evaluation’) — for personalization. Personalization systems are designed and implemented in PIPE by modeling an information-seeking interaction in a programmatic representation. The representation supports the description of information-seeking activities as partial information and their subsequent realization by partial evaluation, a technique for specializing programs. We describe the modeling methodology at a …


Abundance And Distribution Of Commensal Amphipods From Common Marine Sponges Of Southeast Florida, Stacie E. Crowe Jan 2001

Abundance And Distribution Of Commensal Amphipods From Common Marine Sponges Of Southeast Florida, Stacie E. Crowe

HCNSO Student Theses and Dissertations

Marine sponges were examined from shallow waters of southeast Florida and the Florida Keys to determine species composition and distribution of commensal amphipod crustaceans from shallow reef, mangrove, and seagrass habitats. Twenty sponge species were investigated during this study, sixteen of which housed amphipods in the families Colomastigidae and/or Leucothoidae. Six species of commensal amphipods were identified. Leucothoe spinicarpa (Abildgaard) species "complex" was the most dominant amphipod commensal, representing 63% of the total amphipods collected. The L. spinicarpa "complex" contains four local morphotypes, which are diagnosed and briefly described. Common sponge hosts included Callyspongia vaginalis, Mycale sp., and Myriastra kallitetilla.


Ecoregions Of Nebraska And Kansas, Robert F. Diffendal Jr. Jan 2001

Ecoregions Of Nebraska And Kansas, Robert F. Diffendal Jr.

Robert F. Diffendal, Jr., Publications

Ecoregions denote areas of general similarity in ecosystems and in the type, quality, and quantity of environmental resources; they are designed to serve as a spatial framework for the research, assessment, management, and monitoring of ecosystems and ecosystem components. Ecoregions are directly applicable to the immediate needs of state agencies, including the development of biological criteria and water quality standards, and the establishment of management goals for nonpoint-source pollution. They are also relevant to integrated ecosystem management, an ultimate goal of most federal and state resource management agencies. The approach used to compile this map is based on the premise …


Undergraduate Research Opportunities In Microelectronics At Boise State University, S. Burkett, J. Lusth, D. Russell, W. B. Knowlton, S. Parke Jan 2001

Undergraduate Research Opportunities In Microelectronics At Boise State University, S. Burkett, J. Lusth, D. Russell, W. B. Knowlton, S. Parke

Chemistry and Biochemistry Faculty Publications and Presentations

Several opportunities exist for undergraduates in the Microelectronics area at Boise State University. This paper will describe the Research Experience for Undergraduates (REU) program funded by the National Science Foundation and other opportunities that have resulted for undergraduates due to external support. BSU became a NSF REU site for Microelectronics research in 1999. Each year 10 students are recruited nation-wide from various engineering and science disciplines to come to BSU for 8 weeks. The students work intensively with various faculty advisors and graduate student mentors. Another unique feature of our program is the tie to local industry. In 1999-2001, three …


Major Herbicides In Ground Water: Results From The National Water-Quality Assessment, Jack . E. Barbash, Gail P. Thelin, Dana W. Kolpin, Robert J. Gilliom Jan 2001

Major Herbicides In Ground Water: Results From The National Water-Quality Assessment, Jack . E. Barbash, Gail P. Thelin, Dana W. Kolpin, Robert J. Gilliom

United States Geological Survey: Staff Publications

To improve understanding of the factors affecting pesticide occurrence in ground water, patterns of detection were examined for selected herbicides, based primarily on results from the National Water-Quality Assessment (NAWQA) program. The NAWQA data were derived from 2227 sites (wells and springs) sampled in 20 major hydro- logic basins across the USA from 1993 to 1995. Results are presented for six high-use herbicides—atrazine (2-chloro-4-ethylamino-6-iso-propylamino- s-triazine), cyanazine (2-[4-chloro-6-ethylamino-1,3,5-triazin-2-yl]amino]-2-methylpropionitrile), simazine (2-chloro-4,6-bis- [ethylamino]-s-triazine), alachlor (2-chloro-N-[2,6-diethylphenyl]-N- [methoxymethyl]acetamide), acetochlor (2-chloro-N-[ethoxymethyl]- N-[ 2-ethyl-6-methylphenyl]acetamide), and metolachlor (2-chloro-N- [2-ethyl-6-methylphenyl]-N-[2-methoxy-1-methylethyl]acetamide)— as well as for prometon (2,4-bis[isopropylamino]-6-methoxy-s-triazine), a nonagricultural herbicide detected frequently during the study. Concentrations were <1 μg L-1 at 98% …


Occurrence Of Cyanazine Compounds In Groundwater: Degradates More Prevalent Than The Parent Compound, Dana Kolpin, E. Michael Thurman, S. Michael Linhart Jan 2001

Occurrence Of Cyanazine Compounds In Groundwater: Degradates More Prevalent Than The Parent Compound, Dana Kolpin, E. Michael Thurman, S. Michael Linhart

United States Geological Survey: Staff Publications

A recently developed analytical method using liquid chromatography/mass spectrometry was used to investigate the occurrence of cyanazine and its degradates cyanazine acid (CAC), cyanazine amide (CAM), deethylcyanazine (DEC), and deethylcyanazine acid (DCAC) in groundwater. This research represents some of the earliest data on the occurrence of cyanazine degradates in groundwater. Although cyanazine was infrequently detected in the 64 wells across Iowa sampled in 1999, cyanazine degradates were commonly found during this study. The most frequently detected cyanazine compound was DCAC (32.8%) followed by CAC (29.7%), CAM (17.2%), DEC (3.1%), and cyanazine (3.1%). The frequency of detection for cyanazine or one …


Remnant Colloform Pyrite At The Haile Gold Deposit, South Carolina: A Textural Key To Genesis, Nora Foley, Robert A. Ayuso, Robert R. Seal Ii Jan 2001

Remnant Colloform Pyrite At The Haile Gold Deposit, South Carolina: A Textural Key To Genesis, Nora Foley, Robert A. Ayuso, Robert R. Seal Ii

United States Geological Survey: Staff Publications

Auriferous iron sulfide-bearing deposits of the Carolina slate belt have distinctive mineralogical and textural features—traits that provide a basis to construct models of ore deposition. Our identification of paragenetically early types of pyrite, especially remnant colloform, crustiform, and layered growth textures of pyrite containing electrum and pyrrhotite, establishes unequivocally that gold mineralization was coeval with deposition of host rocks and not solely related to Paleozoic tectonic events. Ore horizons at the Haile deposit, South Carolina, contain many remnants of early pyrite: (1) fine-grained cubic pyrite disseminated along bedding; (2) finegrained spongy, rounded masses of pyrite that may envelop or drape …


Earthquake Stress Drop And Laboratory-Inferred Interseismic Strength Recovery, N. M. Beeler, S. H. Hickman, T. F. Wong Jan 2001

Earthquake Stress Drop And Laboratory-Inferred Interseismic Strength Recovery, N. M. Beeler, S. H. Hickman, T. F. Wong

United States Geological Survey: Staff Publications

We determine the scaling relationships between earthquake stress drop and recurrence interval t, that are implied by laboratory-measured fault strength. We assume that repeating earthquakes can be simulated by stick-slip sliding using a spring and slider block model. Simulations with static/kinetic strength, time-dependent strength, and rate- and state-variable dependent strength indicate that the relationship between loading velociety and recurrence intercal can be adequately described be the power law VL ∞ tnr, where n -1. Deviations from n -1 arise from second order effects on strength, with n> -1 corresponding to apparent time-dependent …


2,3,7,8-Tetrachlorodibenzo-P-Dioxin Induces Apoptotic Cell Death And Cytochrome P4501a Expression In Developing Fundulus Heteroclitus Embryos, Barbara Holland Toomey, Susan Bello, Mark E. Hahn, Susannah Cantrell, Peggy Wright, Donald E. Tillitt, Richard T. Di Giulio Jan 2001

2,3,7,8-Tetrachlorodibenzo-P-Dioxin Induces Apoptotic Cell Death And Cytochrome P4501a Expression In Developing Fundulus Heteroclitus Embryos, Barbara Holland Toomey, Susan Bello, Mark E. Hahn, Susannah Cantrell, Peggy Wright, Donald E. Tillitt, Richard T. Di Giulio

United States Geological Survey: Staff Publications

Fundulus heteroclitus embryos were exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) during early development using nanoinjection or water bath exposure. TCDD caused developmental abnormalities that included hemorrhaging, loss of vascular integrity, edema, stunted development and death. The LC50 and LD50 of TCDD for Fundulus embryos were ~19.7 ± 9.5 pg TCDD/µl (water bath) and 0.25 ± 0.09 ng TCDD/g embryo (nanoinjection). To identify a possible cause for these developmental abnormalities we analyzed the effects of TCDD on apoptotic cell death and cytochrome P4501A (CYP1A) expression in the embryos. TCDD exposure increased apoptotic cell death in several tissues including brain, …


Impact Of Climate And Parent Material On Chemical Weathering In Loess-Derived Soils Of The Mississippi River Valley, Daniel R. Muhs, E. A. Bettis Iii, J. Been, J. P. Mcgeehin Jan 2001

Impact Of Climate And Parent Material On Chemical Weathering In Loess-Derived Soils Of The Mississippi River Valley, Daniel R. Muhs, E. A. Bettis Iii, J. Been, J. P. Mcgeehin

United States Geological Survey: Staff Publications

Peoria Loess-derived soils on uplands east of the Mississippi River the midcontinent of North America (Ruhe, 1969; Hall valley were studied from Louisiana to Iowa, along a south-to-north and Anderson, 2000), Alaska (Muhs et al., 2001), and gradient of decreasing precipitation and temperature. Major element China (Maher et al., 1994). Critical to paleoclimatic interanalyses of deep loess in Mississippi and Illinois show that the composi- pretations, using paleosols, are reliable climofunctions tion of the parent material is similar in the northern and southern for modern soils, which give an understanding of soil parts of the valley. We hypothesized that in …


The Pacific Island Mapping Program Of The Us Geological Survey, Frank C. Whitmore Jr. Jan 2001

The Pacific Island Mapping Program Of The Us Geological Survey, Frank C. Whitmore Jr.

United States Geological Survey: Staff Publications

A little-known aspect of the U.S. Geological Survey history is its involvement in preparing terrain intelligence reports during World War II. The Survey's Military Geology Unit was in charge of compiling these reports on areas of possible military operations. Maps were the main part of' these studies; they were compiled from existing maps, geologic and soils literature, aerial and ground photographs, and travelers' accounts. Compiled geologic anti soils maps served as basic data for interpretative maps on such subjects as construction materials. water supply, road and airfield siting and construction, and cross-country movement by tanks.


Kentucky Water Resources Research Institute Annual Technical Report Fy 2000, Kentucky Water Resources Research Institute, University Of Kentucky Jan 2001

Kentucky Water Resources Research Institute Annual Technical Report Fy 2000, Kentucky Water Resources Research Institute, University Of Kentucky

KWRRI Annual Technical Reports (USGS’s 104b Grant Program)

The FY 2000 Annual Technical Report for Kentucky consolidates the reporting requirements of the Section 104(b) base grant and previous regional competitive grant awards in a single technical report that includes: 1) a synopsis of each ongoing research project and each project completed during the period, 2) a list of related reports published, 3) a description of information transfer activities, 4) a summary of student support during the reporting period, and 5) notable achievements and awards during the year.


Transient Anomalous Diffusion In Poiseuille Flow, Marco Latini '01, Andrew J. Bernoff Jan 2001

Transient Anomalous Diffusion In Poiseuille Flow, Marco Latini '01, Andrew J. Bernoff

All HMC Faculty Publications and Research

We revisit the classical problem of dispersion of a point discharge of tracer in laminar pipe Poiseuille flow. For a discharge at the centre of the pipe we show that in the limit of small non-dimensional diffusion, D, tracer dispersion can be divided into three regimes. For small times (t [double less-than sign] D−1/3), diffusion dominates advection yielding a spherically symmetric Gaussian dispersion cloud. At large times (t [dbl greater-than sign] D−1), the flow is in the classical Taylor regime, for which the tracer is homogenized transversely across the pipe and diffuses with …


On-Line Tutorial Project: Intellectual Property In E-Commerce, William J. Murphy Jan 2001

On-Line Tutorial Project: Intellectual Property In E-Commerce, William J. Murphy

Law Faculty Scholarship

Copyrights, Trademarks and Patents make up most of the area of law known as Intellectual Property. Intellectual Property's importance in Electronic Commerce is difficult to overstate. The Internet has been defined as a global network of networks through which computers communicate by sending information in packets, and each network consists of computers connected by cables or wireless links. It is the Intellectual Property laws of Copyright, Trademark and Patents that are attempting to harmonize the effects that E-Commerce and the Internet have had on the individual's ability to access and use this information. It should be remembered that most countries …


Two-Center Effect On Low-Energy Electron Emission In Collisions Of 1-Mev/U Bare Ions With Atomic Hydrogen, Molecular Hydrogen, And Helium. I. Atomic Hydrogen, Lokesh C. Tribedi, P. Richard, L. Gulya´S, M. Eugene Rudd, R. Moshammer Jan 2001

Two-Center Effect On Low-Energy Electron Emission In Collisions Of 1-Mev/U Bare Ions With Atomic Hydrogen, Molecular Hydrogen, And Helium. I. Atomic Hydrogen, Lokesh C. Tribedi, P. Richard, L. Gulya´S, M. Eugene Rudd, R. Moshammer

M. Eugene Rudd Publications

We have investigated ionization mechanisms in fast ion-atom collisions by measuring the low-energy electron emission cross sections in a pure three-body collision involving bare carbon ions (v=6.35 a.u.) colliding with atomic hydrogen targets. The measurements have also been extended to molecular hydrogen and helium targets. In this paper we provide the energy and angular distributions of double differential cross sections of low-energy electron emission for atomic hydrogen targets. The Slevin rf source with a high degree of dissociation was used to produce the atomic H target. It is found that the two-center effect has a major influence on …


Scwds Briefs: Volume 16, Number 4 (January 2001) Jan 2001

Scwds Briefs: Volume 16, Number 4 (January 2001)

Southeastern Cooperative Wildlife Disease Study: Publications


• Avian vacuolar myelinopathy (AVM) was confirmed in eight bald eagles and is suspected in another six eagles that died from mid-November 2000 through late January 2001 at Clarks Hill Lake in eastern Georgia.
• Bovine tuberculosis TB in Manitoba Elk
• CWD in a Nebraska Deer: Chronic wasting disease (CWD) of cervids has been found for the first time in a free-ranging cervid outside Colorado and Wyoming.
• Tropical Bont Tick on St. Croix: The U.S. Department of Agriculture recently announced that the tropical bont tick (Amblyomma variegatum) had been found on St. Croix in the U.S. …


Uber Potenzsummenpolynome (On Polynomials Of Sums Of Power), Jorg Feldvoss Jan 2001

Uber Potenzsummenpolynome (On Polynomials Of Sums Of Power), Jorg Feldvoss

University Faculty and Staff Publications

No abstract provided.


Studies On The Cranial Osteology Of The Blind Catfish Horaglanis Krishnai Menon (Pisces, Clariidae), T. V. Anna Mercy, N. Krishna Pillai Jan 2001

Studies On The Cranial Osteology Of The Blind Catfish Horaglanis Krishnai Menon (Pisces, Clariidae), T. V. Anna Mercy, N. Krishna Pillai

International Journal of Speleology

Horaglanis krishnai Menon is a blind catfish inhabiting the dug- out wells at Kottayam, Kerala, South India. Studies on the cranial osteology of the fish show that the bones on the skull are firmly articulated. The frontoparietal fontanella is very large so that the cranium virtually lacks a roof. The sphenotics and alisphenoids are hardly recognizable and the orbital bones are entirely lacking. In osteological features H. krishnai closely resembles Uegitglanis zammaroni. But in H. krishnai the orbital bones are further reduced or even absent. The fontanella is larger than that of any other known catfish. These two species …


Classification Of Terrestrial Subterranean Fauna Of Volcanic Substrates In The Canary Islands, Josè L. Martín, Helga García, Y. P. Oromí Jan 2001

Classification Of Terrestrial Subterranean Fauna Of Volcanic Substrates In The Canary Islands, Josè L. Martín, Helga García, Y. P. Oromí

International Journal of Speleology

A system is proposed for classifying the species occurring in the hypogean environment in relation to their ecological and evolutionary characteristics. The ecological criteria utilized relate to the preferred habitat of the animals (the epigean, endogean or hypogean environment) and the evolutionary criteria specify the grade of adaptive modification in three characteristics: reduction of eyes, amount of pigmentation and extent of elongation of the appendages. The object of developing this classification is to provide a system appropriate for those regions - such as those with volcanic rocks - in which the cave faunas include elements originating in different environments, and …


Biogenic Speleothems: An Overview, Paolo Forti Jan 2001

Biogenic Speleothems: An Overview, Paolo Forti

International Journal of Speleology

The idea that speleothems may be somehow influenced by living organisms is rather old, but specific studies have only started in the last few decades and presently there are only a couple of systematic papers on this topic. The role of micro-organisms is perhaps the best investigated even if it is not fully understood, while studies over upper organisms and speleothems in a cavern environment are scarce and details are not always given on the involved genetic mechanisms. The aim of the present paper is to give an updated overview on these topics in order to enhance the interest of …


Analysis Of Inorganic Materials Using Advanced Nmr And Nqr Techniques, Anthony Adrian Mrse Jan 2001

Analysis Of Inorganic Materials Using Advanced Nmr And Nqr Techniques, Anthony Adrian Mrse

LSU Doctoral Dissertations

Several advanced solid-state nuclear magnetic resonance (NMR) and nuclear quadrupole resonance (NQR) techniques have been applied to inorganic materials of commercial interest. The specific techniques applied to each system were chosen to solve specific obstacles which impeded the flow of industrial science.

First, the dispersion of brominated flame retardants in polymers is monitored using pulsed 81Br NQR (nuclear quadrupole resonance) techniques. The NQR spectrometer consists of a homemade NMR console and an automatically tuned loop-gap resonator probe. The two factors which affect the 81Br NQR transition frequencies of brominated aromatics are: electron-donating and withdrawing substituents on the ring …


The Synthesis Of Deuterated Arylamine Dna Adducts For Use In The Development Of An Isotope Dilution Lc/Ms/Ms Method, Philip Dmitri Olsen Jan 2001

The Synthesis Of Deuterated Arylamine Dna Adducts For Use In The Development Of An Isotope Dilution Lc/Ms/Ms Method, Philip Dmitri Olsen

LSU Doctoral Dissertations

Polycyclic aromatic amines (arylamines) are a class of chemical carcinogens that are prevalent in environmental and industrial settings. In order to study the mechanism of their toxicity a quantitative and qualitative detection method was developed to measure the C8-adenine adducts of benzidine and 2-aminofluorene in DNA samples. To do this a novel synthetic method using a palladium catalyst was developed to prepare authentic and deuterated arylamine adducts to serve as standards. These standards were then used to develop a high performance liquid chromatography, electrospray, tandem mass spectrometry, isotope dilution, detection method. To demonstrate the validity of this method two spike …


Enumeration Of Equicolourable Trees, Nicholas Pippenger Jan 2001

Enumeration Of Equicolourable Trees, Nicholas Pippenger

All HMC Faculty Publications and Research

A tree, being a connected acyclic graph, can be bicolored in two ways, which differ from each other by exchange of the colors. We shall say that a tree is equicolorable if these bicolorings assign the two colors to equal numbers of vertices. Labelled equicolored trees have been enumerated several times in the literature, and from this result it is easy to enumerate labelled equicolorable trees. The result is that the probability that a randomly chosen n-vertex labelled tree is equicolorable is asymptotically just twice the probability that its vertices would be equicolored if they were assigned colors by …


A Mathematical Tumor Model With Immune Resistance And Drug Therapy: An Optimal Control Approach, Lisette G. De Pillis, Ami E. Radunskaya Jan 2001

A Mathematical Tumor Model With Immune Resistance And Drug Therapy: An Optimal Control Approach, Lisette G. De Pillis, Ami E. Radunskaya

All HMC Faculty Publications and Research

We present a competition model of cancer tumor growth that includes both the immune system response and drug therapy. This is a four-population model that includes tumor cells, host cells, immune cells, and drug interaction. We analyze the stability of the drug-free equilibria with respect to the immune response in order to look for target basins of attraction. One of our goals was to simulate qualitatively the asynchronous tumor-drug interaction known as “Jeffs phenomenon.” The model we develop is successful in generating this asynchronous response behavior. Our other goal was to identify treatment protocols that could improve standard pulsed chemotherapy …


Spider Ii: A Component-Based Distributed Computing System, Koping Wang Jan 2001

Spider Ii: A Component-Based Distributed Computing System, Koping Wang

Theses Digitization Project

Spider II system is the second version implementation of the Spider project. This system is the first distributed computation research project in the Department of Computer Science at CSUSB. Spider II is a distributed virtual machine on top of the UNIX or LINUX operating system. Spider II features multi-tasking, load balancing and fault tolerance, which optimize the performance and stability of the system.


The Obispeno Chumash Indians: San Luis Obispo County's First Environmentalists, Sharon L. Marks Jan 2001

The Obispeno Chumash Indians: San Luis Obispo County's First Environmentalists, Sharon L. Marks

Theses Digitization Project

The primary focus of this project is with the interaction between nature and people. How did the Obispeno Chumash affect their surroundings and what was the outcome? Did changes occur in the environment when other people took over the care of the land? Over the last 250 years, the Obispeno Chumash land has evolved from an ecologically green dominion under their stewardship to the present day where the area is noted for its mission, recreational value, wealth of opportunity, and a nuclear power plant located between Morro Bay and Point Buchon along the ocean.


Mineral And Fuel Resources Map Of Kentucky, Warren H. Anderson, Garland R. Dever Jr. Jan 2001

Mineral And Fuel Resources Map Of Kentucky, Warren H. Anderson, Garland R. Dever Jr.

Map and Chart--KGS

The production of minerals and fuels in Kentucky is a multibillion dollar industry. Historically, coal, oil, natural gas, limestone, sand and gravel, clay, fluorite, barite, lead, iron, phosphate, zinc, and brines have been produced in the state. These resources have greatly influenced the development of Kentucky by providing raw materials for the early settlers who settled the state and for current industrial and economic development. Electrical power for homes, businesses, and factories; materials for constructing houses, buildings, automobiles, and roads; and products we consume in everyday life come from the earth's mineral and fuel resources.

The ability to locate and …


Impact Of Gravel Dredging Operations On Surface Water Quality In Streams In The Upper Cumberland Basin, Jeffrey D. Jack, Arthur C. Parola, Anna L. Curini, Randall Kelley, Mark N. French, D. J. Hagerty, William M. Sampson Jan 2001

Impact Of Gravel Dredging Operations On Surface Water Quality In Streams In The Upper Cumberland Basin, Jeffrey D. Jack, Arthur C. Parola, Anna L. Curini, Randall Kelley, Mark N. French, D. J. Hagerty, William M. Sampson

KWRRI Research Reports

This is a report to the USEPA, Kentucky Division of Water and the Kentucky Water Resources Research Institute, focused on the biologic and morphological impacts of gravel mining in the upper Cumberland basin.


Intrinsically Bent Dna In The Promoter Regions Of The Yeast Gal1–10 And Gal80 Genes, Ralph C. Bash, Jeff Vargason, P. Shing Ho, D. Lohr Jan 2001

Intrinsically Bent Dna In The Promoter Regions Of The Yeast Gal1–10 And Gal80 Genes, Ralph C. Bash, Jeff Vargason, P. Shing Ho, D. Lohr

Faculty Publications - Department of Biological & Molecular Science

Circular permutation analysis has detected fairly strong sites of intrinsic DNA bending on the promoter regions of the yeast GAL1–10 and GAL80 genes. These bends lie in functionally suggestive locations. On the promoter of the GAL1–10 structural genes, strong bends bracket nucleosome B, which lies between the UASG and the GAL1 TATA. These intrinsic bends could help position nucleosome B. Nucleosome B plus two other promoter nucleosomes protect the TATA and start site elements in the inactive state of expression but are completely disrupted (removed) when GAL1–10 expression is induced. The strongest intrinsic bend (;70°) lies at the downstream edge …