Physical Sciences and Mathematics Commons^™

Parametric And Nonparametric Methods For Understanding The Relationship Between Carcinogen-Induced Dna Adduct Levels In Distal And Proximal Regions Of The Colon., Jeffrey S. Morris, Naisyin Wang, Joanne R. Lupton, Robert S. Chapkin, Nancy D. Turner, Mee-Young Hong, Raymond J. Carroll

Jeffrey S. Morris

An important problem in studying the etiology of colon cancer is understanding the relationship between DNA adduct levels (broadly, DNA damage) in cells within colonic crypts in distal and proximal parts of the colon, following treatment with a carcinogen and different types of diet. In particular, it is important to understand whether rats who have elevated adduct levels in particular positions in distal region crypts also have elevated levels in the same positions of the crypts in proximal regions, and whether this relationship depends on diet. We cast this problem as estimating the correlation function of two responses as a …

The Dissolution Of Dnapls In Variable Aperture Fractures, Sarah E. Dickson

Sarah E Dickson

No abstract provided.

A Cooperative Molecular Modeling Exercise— The Hypersurface As Classroom, Christopher J. Cramer, Bethany L. Kormos, Paul Winget, Vanessa M. Audette, Jeremy M. Beebe, Carolyn S. Brauer, W.Russ Burdick, Eric W. Cochran, Brian M. Eklov, Timothy J. Giese, Yongseok Jun, Lakshmi S.D. Kesavan, Christopher R. Kinsinger, Mikhail E. Minyaev, Ramkumar Rajamani, Jonathon S. Salsbury, John M. Stubbs, Jack T. Surek, Jason D. Thompson, Vincent A. Voelz, Collin D. Wick, Ling Zhang

Eric W. Cochran

Quantum chemistry has been a staple of undergraduate curricula for several decades. For the most part, however, it has been the rare course in quantum chemistry that advances much beyond the hydrogen atom (or perhaps H2) in terms of describing the electronic structure of real molecular systems. Driven in part by staggering advances in computer technology during the last 15 years or so, which have rendered possible on a laptop calculations that once would have taxed the largest mainframes available, this situation now seems to be changing (1–3).

"Stratigraphic Analysis Of Upper Cretaceous Rocks In The Mahajanga Basin, Northwestern Madagascar: Implications For Ancient And Modern Faunas: Reply.", Raymond Rogers, J.H. Hartman, D.W. Krause

Raymond Rogers

No abstract provided.

Environment-Induced Degradation And Crack-Growth Studies Of Candidate Target Materials: Aaa Task-4 Quarterly (June 1 – August 31, 2001) Report, Ajit K. Roy, Brendan O'Toole

Transmutation Sciences Materials (TRP)

The subject task entitled “Hydrogen-Induced Embrittlement of Candidate Target Materials for Applications in Spallation-Neutron-Target Systems” had commenced during the quarter ending on August 31, 2001. A research account has been established, contracts for both faculty and students have been prepared, and efforts are well underway to embark on the related research activities, as proposed.

As the title of this project implies, the primary objective of this task is to evaluate the effect of hydrogen on environment-assisted cracking of candidate materials for applications in spallationneutron- target (SNT) systems such as accelerator production of tritium (APT) and accelerator transmutation of waste (ATW). …

On Misorientation Distribution Evolution During Anisotropic Grain Growth, Elizabeth A. Holm, Gregory N. Hassold, Mark A. Miodownik

Physics Publications

In order to study the development of texture and boundary character during annealing, three-dimensional grain crystallography and crystallographically mediated grain boundary properties were incorporated into a finite temperature Monte Carlo model for grain growth. Randomly textured microstructures evolve normally, with growth exponent n=0.96. While texture remains random, the steady-state boundary misorientation distribution favors low-angle boundaries. To first order, low-angle boundaries increase by lengthening, not by proliferating. In contrast, microstructures with a strong single-component texture develop four-grain junctions and highly curved grain boundaries, which alter evolution. The boundary misorientation distribution narrows and shifts to low angles, and no steady state …

Quantile Regression, Kevin F. Hallock, Roger Koenker

Economics Faculty Publications

Quantile regression as introduced by Koenker and Bassett seeks to extend ideas of quantiles to the estimation of conditional quantile functions--models in which quantiles of the conditional distribution of the response variable are expressed as functions of observed covariates.

Differential Elastic Image Registration, Senthil Periaswamy, Hany Farid

Computer Science Technical Reports

We have applied techniques from differential motion estimation to the problem of automatic elastic registration of medical images. This method models the mapping between images as a locally affine but globally smooth warp. The mapping also explicitly accounts for variations in image intensities. This approach is simple and highly effective across a broad range of medical images. We show the efficacy of this approach on several synthetic and clinical images.

The Edge Of The Universe-Noneuclidean Wallpaper, Frank A. Farris

Mathematics and Computer Science

A simple mathematical model of a two-dimensional universe, called the Poincaré Upper Halfplane, illustrates the possibility of a universe with an unattainable edge. In this article, I describe this model -a famous example of a noneuclidean geometry-and explain how conversations with an analytic number theorist led me to create wallpaper patterns for its inhabitants. These are interesting not only for their high "Gee whiz!"factor, but also as a window for observing the features of this unusual geometry.

Table Of Contents Volume 12, Number 3/4, Fall 2001, Risk Editorial Board

RISK: Health, Safety & Environment (1990-2002)

Table of contents for the journal RISK: Health, Safety & Environment (ISSN: 1073-8673)

Public Reaction To Mandated Language For U.S. Drinking Water Quality Reports, Branden B. Johnson

RISK: Health, Safety & Environment (1990-2002)

The author discusses results of a survey evaluating the mandated language for United States drinking water quality reports.

Review Of: Social Trust And The Management Of Risk (George Cvetkovich & Ragnar E. Loftstedt, Eds.), Mahua Roy Chowdhury

RISK: Health, Safety & Environment (1990-2002)

Review of the book: Social Trust and the Management of Risk (George Cvetkovich & Ragnar E. Löfstedt, eds., Earthscan Publications Ltd. 1999). Tables, Figures, and Boxes, Acronyms and Abbreviations, Forward, Preface, Introduction, References, Index. ISBN 1-85383-604-4 [196 pp. $25.00. Paperback, 120 Pentonville Road, London, NI 9JN UK].

Journalists' Views Of The Environment: Issues And Challenges, Bernadette West, Jane Lewis, Michael Greenberg

RISK: Health, Safety & Environment (1990-2002)

In advocating the use of an environmental handbook for journalists, the authors report on a survey of reporters and editors regarding salient environmental issues in different regions of the United States and e emphasis placed on environmental reporting in newsrooms.

Review Of: Eckard Kämper, Decision Making Under Risk In Organisations: The Case Of German Waste Management, Jeremy S. Cleverly

RISK: Health, Safety & Environment (1990-2002)

Review of the book: Eckard K-Kämper, Decision Making Under Risk in Organisations: The Case of German Waste Management (Ashgate Publishing Co. 2000). Preface, Acknowledgements, Bibliography. ISBN 0-7546-1434-4 [183 pp. $69.95. Hardbound, 131 Main Street, Burlington, VT 05401- 5600].

Intelligent Grouping Of Tcp Flows For Coordinated Congestion Management, Hoi Chang, Rajeev Gopalakrishna, Venkatesh Prabhakar

Department of Computer Science Technical Reports

No abstract provided.

Stochastic Functional Differential Equations On Manifolds, Rémi Léandre, Salah-Eldin A. Mohammed

Articles and Preprints

In this paper, we study stochastic functional differential equations (sfde's) whose solutions are constrained to live on a smooth compact Riemannian manifold. We prove the existence and uniqueness of solutions to such sfde's. We consider examples of geometrical sfde's and establish the smooth dependence of the solution on finite-dimensional parameters.

Off-Diagonal Exchange-Induced Transverse And Field-Induced Spin-Flop Order In The Diluted Metamagnet Fe0.85Mg0.15Br2, Wolfgang Kleeman, H. Aruga Katori, T. Kato, Christian Binek, K. Katsumata

Christian Binek Publications

Specific heat and Faraday rotation magnetometry were used to determine the axial magnetic phase diagram of the dilute hexagonal antiferromagnet Fe_0.85Mg_0.15Br₂. In contrast to metamagnetic pure FeBr₂, the first-order line of transverse phase transitions, H1(T), is disconnected with the antiferro-to-paramagnetic phase line H_c(T) and extends down to H_t=0 at T_t≈8.7 . This is attributed to symmetric off-diagonal exchange in the presence of structural disorder. Moreover, a spin-flop phase emerges beyond H_c(T) up to a bicritical point (T_b≈9.3 , μ_oH …

Applying Habitat Equivalency Analysis For Coral Reef Damage Assessment And Restoration, J. Walter Milon, Richard E. Dodge (Editor)

Marine & Environmental Sciences Faculty Articles

Quantifying economic damages and restoration measures for injuries to coral reefs has been a difficult task. In the U.S., habitat equivalency analysis (HEA) has emerged as a novel tool that combines biological and economic information to identify replacement habitats of an appropriate scale to substitute for the interim losses resulting from coral reef injuries. This article provides a review of the basic principles underlying HEA and a discussion of important considerations in applying HEA. These considerations include: how to describe coral reef functions and related human uses, recovery rates of coral reef organisms at injured sites with natural and active …

Site-Dependent Differences In Artificial Reef Function: Implications For Coral Reef Restoration, Robin L. Sherman, David S. Gilliam, Richard E. Spieler

Marine & Environmental Sciences Faculty Articles

There is an increasing use of artificial structure in coral reef restoration (for references, see Spieler et al., this volume). Often artificial reef structures are chosen for a restoration project simply because they were used elsewhere. However, it is questionable whether the results obtained at one restoration site can be extrapolated to another. In recent years, several studies have examined the effect of artificial reef site selection on formation of associated fish, algae, and/or invertebrate assemblages (Alevizon et al., 1985; Blinova et al., 1994; Bombace et al., 1994; Caley and St. John, 1996; Chang, 1985; Haughton and Aiken, 1989; Hixon …

Artificial Substrate And Coral Reef Restoration: What Do We Need To Know To Know What We Need, Richard E. Spieler, David S. Gilliam, Robin L. Sherman

Marine & Environmental Sciences Faculty Articles

To use artificial substrate effectively in coral reef restoration certain basic knowledge is required: (1) what is the artificial substrate expected to accomplish relative to the goals of the restoration effort and (2) what are the expected interactions of the selected substrate’s composition, texture, orientation, and design with the damaged environment and the biota of interest. Whereas the first point is usually clear, at least in general terms, the second is not. In this review, we examine: the functions of artificial substrate in restoration and some of the physical (i.e., composition; surface texture; color and chemistry; and design in terms …

Mapping And Monitoring Of Coral Communities And Their Spatial Patterns Using A Surface-Based Video Method From A Vessel, Bernhard Riegl, Jan L. Korrubel, Charles Martin

Marine & Environmental Sciences Faculty Articles

No Abstract Provided.

Degradation Of Reef Structure, Coral And Fish Communities In The Red Sea By Ship Groundings And Dynamite Fisheries, Bernhard Riegl

Marine & Environmental Sciences Faculty Articles

Reef degradation was investigated on 66 Egyptian Red Sea reefs—60 reefs for dynamite damage (using line transects) and six ship grounding sites (using 1 m sample squares). Ship groundings and dynamite fishing caused similar damage, reduction of the reef to rubble (65% of reefs were dynamited, mostly leeward, 58%). Changes in coral (line transect study) and fish communities (point count study) in impacted sites were documented. On impacted reefs, coral cover decreased, bare substratum and rubble increased, and fish dominance shifted away from Pomacentridae. Oceanographic conditions result in a stable pattern of coral communities (windward Acropora, leeward Porites). …

Dynamics Of The "Pgmcc" Multicast Congestion Control Protocol, Chin-Ying Wang, Sonia Fahmy

Department of Computer Science Technical Reports

No abstract provided.

Tcp Congestion Control: Overview And Survey Of Ongoing Research, Sonia Fahmy, Tapan Prem Karwa

Department of Computer Science Technical Reports

No abstract provided.

Strong Enhancement Of Superconducting TC In Ferromagnetic Phases, Theodore R. Kirkpatrick, Dietrich Belitz, Thomas Vojta, Rajesh S. Narayanan

Physics Faculty Research & Creative Works

It is shown that the critical temperature for spin-triplet, p-wave superconductivity mediated by spin fluctuations is generically much higher in a Heisenberg ferromagnetic phase than in a paramagnetic one, due to the coupling of the magnons to the longitudinal magnetic susceptibility. Together with the tendency of the low-temperature ferromagnetic transition in very clean Heisenberg magnets to be of first order, this qualitatively explains the phase diagram recently observed in UGe₂.

Monotone Solutions Of A Nonautonomous Differential Equation For A Sedimenting Sphere, Andrew Belmonte, Jon T. Jacobsen, Anandhan Jayaraman

All HMC Faculty Publications and Research

We study a class of integrodifferential equations and related ordinary differential equations for the initial value problem of a rigid sphere falling through an infinite fluid medium. We prove that for creeping Newtonian flow, the motion of the sphere is monotone in its approach to the steady state solution given by the Stokes drag. We discuss this property in terms of a general nonautonomous second order differential equation, focusing on a decaying nonautonomous term motivated by the sedimenting sphere problem

Seeding Effect On Micro- And Domain Structure Of Sol–Gel-Derived Pzt Thin Films, A. L. Kholkin, Alexei Gruverman, A. Wu, M. Avdeev, P. M. Vilarinho, I. M. Miranda Salvado, J. L. Baptista

Alexei Gruverman Publications

Current trend to miniaturization requires precise control of micro- and domain structure of ferroelectric materials at the nanoscale level. This is essential for future applications of ferroelectric thin films in non-volatile memories, microactuators and pyroelectric arrays. In this work, the seeding effect on the nanoscale properties of ferroelectric Pb(Zr,Ti)O₃ (PZT) thin films is investigated using scanning force microscopy (SFM) capable of simultaneously resolving topographic and domain features on the surface of the films. It is shown that the addition of 5 mol% seeds (fine PZT powder) into the sol–gel precursor solution completely modifies the film’s microstructure leading to the …

Identification Of Regulatory Elements Using A Feature Selection Method, Sunduz Keles, Mark J. Van Der Laan, Michael B. Eisen

U.C. Berkeley Division of Biostatistics Working Paper Series

Many methods have been described to identify regulatory motifs in the transcription control regions of genes that exhibit similar patterns of gene expression across a variety of experimental conditions. Here we focus on a single experimental condition, and utilize gene expression data to identify sequence motifs associated with genes that are activated under this experimental condition. We use a linear model with two way interactions to model gene expression as a function of sequence features (words) present in presumptive transcription control regions. The most relevant features are selected by a feature selection method called stepwise selection with monte carlo cross …

The Prairie Naturalist Volume 33, No.3 September 2001

The Prairie Naturalist

SEASONAL REPRODUCTION IN SIGMODON HISPIDUS INHABITING TALLGRASS PRAIRIES OF OKLAHOMA ▪ J. A. Wilson and R. L. Lochmiller

USE OF THE INDEX OF BIOLOGICAL INTEGRITY IN EASTERN SOUTH DAKOtA RIVERS ▪ C. L. Milewski, C. R. Berry, and D. Dieterman

SEED USE BY VERTEBRATES AND INVERTEBRATES IN TALLGRASS PRAIRIE ▪ A. W. Reed, G. A. Kaufman, J. E. Boyer, Jr., and D. W. Kaufman

RANGE EXPANSION OF THE PILEATED WOODPECKER IN NORTH DAKOTA ▪ J. A. Dechant 163

LAB FATTENING AND NON-INVASIVE ESTIMATES OF BODY COMPOSITION IN DEER MICE ▪ E. T. Unangst, Jr., M. J. Blair, M. W. Granger, …

Math Major, Math Major, Arthur T. Benjamin

All HMC Faculty Publications and Research

Sung to the tune of "Matchmaker" from Fiddler on the Roof:

Math major, math major, make me some math.

Find me a prime, sketch me a path.

Math major, math major look through your books,

And make me some perfect math.