Physical Sciences and Mathematics Commons^™

Radionuclide And Biomarker Proxies Of Past Ocean Circulation And Productivity In The Arabian Sea, A Pourmand, F Marcantonio, Ts Bianchi, Elizabeth A. Canuel, Ej Waterson

VIMS Articles

We present new excess Pa-231/Th-230 activity ratios and lipid biomarker results from northeastern Arabian Sea sediments (core 93KL) spanning the past 50 ka in an effort to constrain further the relationship between climate at low and high latitudes. Pa-231/Th-230 activity ratios are maintained at values significantly higher than the water-column production ratio of 0.093. Average Pa-231/Th-230 activity ratios are lower during the last glacial period than during the Holocene. The lowest Pa-231/Th-230 activity ratios coincide with the timing of Heinrich Events 1-5. Profiles of lipid biomarker fluxes and Pa-231/Th-230 activity ratios from 32 to 12 ka show similar patterns, suggesting …

Black Hole Thermodynamics From Near-Horizon Conformal Quantum Mechanics, Horacio E. Camblong

Physics and Astronomy

The thermodynamics of black holes is shown to be directly induced by their near-horizon conformal invariance. This behavior is exhibited using a scalar field as a probe of the black hole gravitational background, for a general class of metrics in D spacetime dimensions (with D≥4). The ensuing analysis is based on conformal quantum mechanics, within a hierarchical near-horizon expansion. In particular, the leading conformal behavior provides the correct quantum statistical properties for the Bekenstein-Hawking entropy, with the near-horizon physics governing the thermodynamics from the outset. Most importantly: (i) this treatment reveals the emergence of holographic properties; (ii) the conformal coupling …

Cisplatin Carbonato Complexes. Implications For Uptake, Antitumor Properties, And Toxicity, Corey R. Centerwall, Jerry Goodisman, Deborah J. Kerwood, James C. Dabrowiak

Chemistry - All Scholarship

The reaction of aquated cisplatin with carbonate which is present in culture media and blood is described. The first formed complex is a monochloro monocarbonato species, which upon continued exposure to carbonate slowly forms a biscarbonato complex. The formation of carbonato species under conditions that simulate therapy may have important implications for uptake, antitumor properties, and toxicity of cisplatin.

New Statistical Paradigms Leading To Web-Based Tools For Clinical/Translational Science, Knut M. Wittkowski

COBRA Preprint Series

As the field of functional genetics and genomics is beginning to mature, we become confronted with new challenges. The constant drop in price for sequencing and gene expression profiling as well as the increasing number of genetic and genomic variables that can be measured makes it feasible to address more complex questions. The success with rare diseases caused by single loci or genes has provided us with a proof-of-concept that new therapies can be developed based on functional genomics and genetics.

Common diseases, however, typically involve genetic epistasis, genomic pathways, and proteomic pattern. Moreover, to better understand the underlying biologi-cal …

The Lie Symmetries Of A Few Classes Of Harmonic Functions, Willis L. Petersen

Theses and Dissertations

In a differential geometry setting, we can analyze the solutions to systems of differential equations in such a way as to allow us to derive entire classes of solutions from any given solution. This process involves calculating the Lie symmetries of a system of equations and looking at the resulting transformations. In this paper we will give a general background of the theory necessary to develop the ideas of working in the jet space of a given system of equations, applying this theory to harmonic functions in the complex plane. We will consider harmonic functions in general, harmonic functions with …

Spin Photovoltaic Effect In Quantum Wires With Rashba Interaction, Yuriy V. Pershin Dr, Carlo Piermarocchi

Faculty Publications

We propose a mechanism for spin-polarized photocurrent generation in quantum wires. The effect is due to the combined effect of Rashba spin-orbit interaction, external magnetic field, and microwave radiation. The time-independent interactions in the wire give rise to a spectrum asymmetry in k space. The microwave radiation induces transitions between spin-splitted subbands, and, due to the peculiar energy dispersion relation, charge and spin currents are generated at zero-bias voltage. We demonstrate that the generation of pure spin currents is possible under an appropriate choice of external control parameters.

Using Databases And Computational Techniques To Infer The Function Of Novel Proteins, Viswanathan Ramanathan, Kelly A. Mercier, Robert Powers, Peter Revesz

Chemistry Department: Faculty Publications

The Human Genome Project and similar efforts have resulted in the identification of an abundance of novel proteins. There is a need to expedite the process of assigning function to novel proteins. Nuclear magnetic resonance (NMR) spectroscopy can be used to infer a general biological function for a protein of unknown function by identifying compounds that preferentially bind the protein and comparing these results against proteins with defined structure and function. The Functional NMR screen generates hundreds of data sets and a manual analysis of these data sets is laborious and time- consuming. It is hypothesized that several sub-tasks of …

Scalable Multiresolution Color Image Segmentation With Smoothness Constraint, F. Akhlaghian Tab, G. Naghdy, Alfred Mertins

Faculty of Informatics - Papers (Archive)

This paper presents a multiresolution image segmentation method based on the discrete wavelet transform and Markov random field (MRF) modeling. A major contribution of this work is to add spatial scalability to the segmentation algorithm producing the same segmentation pattern at different resolutions. This property makes it applicable for scalable object-based wavelet coding. The correlation between different resolutions of pyramid is considered by a multire solution analysis which is incorporated into the objective function of the MRF segmentation algorithm. Examining the corresponding pixels at different resolutions simultaneously enables the algorithm to directly segment the images in the YUV or similar …

Link Redundancy Based Connected Topologies In Ad-Hoc Networks, G. Srivastava, P. Boustead, Joe F. Chicharo

Faculty of Informatics - Papers (Archive)

The topology of a wireless network can have a significant impact on the connectivity, fault tolerance and longevity of a network. Power optimised topology control algorithms including a relative neighbourhood graph (RNG) and a minimum spanning tree (MST) reduce the links in a network topology, while keeping a topology connected. Link redundancy may be critical to cope with faults such as node failures and link disruptions. In this paper, we analyse the fault tolerance of a number of topology control algorithms. We propose a new distributed mechanism to increase the fault tolerance of power optimised topology control algorithms. The proposed …

Fine Structure Of Beta Decay Endpoint Spectrum, Joseph Schechter, Samina S. Masood, Salah Nasri

Physics - All Scholarship

We note that the fine structure at the endpoint region of the beta decay spectrum is now essentially known using neutrino oscillation data, if the mass of one neutrino is specified. This may help to identify the effects of nonzero neutrino masses in future experiments. An exact treatment of phase space kinematics is used. This work is independent of theoretical models. Additional restrictions due to the assumption of a so-called "complementary ansatz" for the neutrino mass matrix are also discussed.

Preheating In New Inflation, Mariel Desroche, Gary Felder, Jan M. Kratochvil, Andrei Linde

Physics: Faculty Publications

During the last ten years a detailed investigation of preheating was performed for chaotic inflation and for hybrid inflation. However, nonperturbative effects during reheating in the new inflation scenario remained practically unexplored. We investigate preheating in new inflation, using a combination of analytical and numerical methods. We find that the decay of the homogeneous component of the inflaton field and the resulting process of spontaneous symmetry breaking in the simplest models of new inflation usually occurs almost instantly: for the new inflation on the GUT scale it takes only about 5 oscillations of the field distribution. The decay of the …

Ozone Damage Potential To Loblolly Pine Ecosystems In Metropolitan Atlanta, Georgia, Diane Marie Styers

Geosciences Theses

Atlanta is one of the largest metropolitan areas in the southeastern United States and is the only area in the region currently listed in “serious” 1-hour ozone nonattainment. Despite its exceedance history, impacts on Atlanta’s urban forests have not been the focus of any major studies. The purpose of this study was to examine air pollution damage to vegetation using a foliar-injury survey on Stone Mountain. The objectives of this project included 1) establishing that pollution transport from Atlanta to Stone Mountain occurs, 2) determining the magnitude of ozone concentrations near Stone Mountain and 3) assessing sensitive plant species on …

An Improved Music Model For Gibbsite, Scott Christian Mitchell

Theses and Dissertations

Several recent studies that have proposed MUSIC models for gibbsite surfaces have purported to achieve a very good fit with potentiometric titration data. However, in order to achieve such results, several significant parameters, such as the number of surface sites, site densities, and pKa values were sometimes re-introduced in the model as fitted parameters, and physically unrealistic modeling assumptions were sometimes used. In addition, recent evidence supports the idea that some of the gibbsite potentiometric titration data from these studies may be unreliable. In order to re-interpret the potentiometric titration data, we used several recently published methods. In order to …

Determining The Optimum Number Of Increments In Composite Sampling, John Ellis Hathaway

Theses and Dissertations

Composite sampling can be more cost effective than simple random sampling. This paper considers how to determine the optimum number of increments to use in composite sampling. Composite sampling terminology and theory are outlined and a model is developed which accounts for different sources of variation in compositing and data analysis. This model is used to define and understand the process of determining the optimum number of increments that should be used in forming a composite. The blending variance is shown to have a smaller range of possible values than previously reported when estimating the number of increments in a …

Lattice Thermal Conductance In Nanowires At Low Temperatures: Breakdown And Recovery Of Quantization, Y. Tanaka, F. Yoshida, S. Tamura

Dartmouth Scholarship

The quantization of lattice thermal conductance g normalized by g0=π2k2BT/3h (the universal quantum of thermal conductance) was recently predicted theoretically to take an integer value over a finite range of temperature and then observed experimentally in nanowires with catenoidal contacts. The prediction of this quantization by Rego and Kirczenow [Phys. Rev. Lett. 81, 232 (1998)] relies on a study of only dilatational (longitudinal) vibrational mode in the wires. We study the thermal conductance in catenoidal wires by explicitly calculating the transmission rates of the six distinct vibrational modes (four acoustic and two low-lying optical modes) and applying the Landauer …

Estimating Function Based Cross-Validation And Learning, Mark J. Van Der Laan, Daniel Rubin

U.C. Berkeley Division of Biostatistics Working Paper Series

Suppose that we observe a sample of independent and identically distributed realizations of a random variable. Given a model for the data generating distribution, assume that the parameter of interest can be characterized as the parameter value which makes the population mean of a possibly infinite dimensional estimating function equal to zero. Given a collection of candidate estimators of this parameter, and specification of the vector estimating function, we propose cross-validation criteria for selecting among these estimators. This cross-validation criteria is defined as the Euclidean norm of the empirical mean over the validation sample of the estimating function at the …

Mechanisms Of Magnetic Orientation In Birds, Robert C. Beason

United States Department of Agriculture Wildlife Services: Staff Publications

Behavior and electrophysiological studies have demonstrated a sensitivity to characteristics of the Geomagnetic field that can be used for navigation, both for direction finding (compass) and position finding (map). The avian magnetic compass receptor appears to be a light-dependent, wavelength-sensitive system that functions as a polarity compass (i.e., it distinguishes poleward from equatorward rather than north from south) and is relatively insensitive to changes in magnetic field intensity. The receptor is within the retina and is based on one or more photopigments, perhaps cryptochromes. A second receptor system appears to be based on magnetite and might serve to transduce location …

Estimation Of (N, F) Cross Sections By Measuring Reaction Probability Ratios, C. Plettner, H. Ai, C. W. Beausang, L. A. Bernstein, L. Ahle, H. Amro, M. Babilon, J. T. Burke, J. A. Caggiano, R. F. Casten, J. A. Church, J. R. Cooper, B. Crider, G. Gurdal, A. Heinz, E. A. Mccutchan, K. Moody, J. A. Punyon, J. Qian, J. J. Ressler, A. Schiller, E. Williams, W. Younes

Physics Faculty Publications

Neutron-induced reaction cross sections on unstable nuclei are inherently difficult to measure due to target activity and the low intensity of neutron beams. In an alternative approach, named the “surrogate” technique, one measures the decay probability of the same compound nucleus produced using a stable beam on a stable target to estimate the neutron-induced reaction cross section. As an extension of the surrogate method, in this paper we introduce a new technique of measuring the fission probabilities of two different compound nuclei as a ratio, which has the advantage of removing most of the systematic uncertainties. This method was benchmarked …

Comparison Of Preconstruction And 2003 Bathymetric And Topographic Surveys Of Lake Mcconaughy, Nebraska, W. H. Kress, S. K. Sebree, G. R. Littin, M. A. Drain, M. E. Kling

United States Geological Survey: Publications

The U.S. Geological Survey, in cooperation with The Central Nebraska Public Power and Irrigation District, conducted a study that used bathymetric and topographic surveying in conjunction with Geographical Information Systems techniques to determine the 2003 physical shape, current storage capacity, and the changes in storage capacity of Lake McConaughy that have occurred over the past 62 years. By combining the bathymetric and topographic survey data, the current surface area of Lake McConaughy was determined to be 30,413.0 acres, with a volume of 1,756,300 acre-feet at the lake conservation-pool elevation of 3,266.4 feet above North American Vertical Datum of 1988 (3,265.0 …

Evaluation Of Paleo-Climate For The Boise Area, Idaho, From The Last Glacial Maximum To The Present Based On Delta 2h And Delta 18o Groundwater Composition, Melissa Eileen Schlegel

Theses and Dissertations

There are four distinguishable groundwater systems in the Boise area, Idaho, U.S.A., identified as modern batholith, thermal batholith, Boise frontal fault, and Nampa-Caldwell systems (Figure 1). Modern batholith and thermal batholith groundwaters are located in Tertiary to Cretaceous aged granites and granodiorites of the Atlanta lobe of the Idaho Batholith. The frontal fault system near Boise, ID defines the southeastern edge of the Idaho Batholith, and divides the batholith from the western Snake River Plain. The Nampa-Caldwell system is in the volcanic, fluvial and pluvial sediments of the western Snake River Plain. Groundwater ages for these systems are modern, 5-15 …

Correlation Length And Chirality Of The Fluctuations In The Isotropic Phase Of Nematic And Cholesteric Liquid Crystals, Jacob J. Krich , '00, Mark B. Romanowsky , '03, Peter J. Collings

Physics & Astronomy Faculty Works

Light-scattering measurements of the correlation length in the isotropic phase of a nematic liquid crystal reveal a temperature dependence following Landau-de Gennes theory for the isotropic phase with a bare correlation length smaller than has been measured in other liquid crystals. Similar measurements in a cholesteric liquid crystal demonstrate that the correlation length in the isotropic phase is larger than typically found in nematics and that the chirality of the fluctuations in the isotropic phase is slightly higher than the chirality of the cholesteric phase. Landau-de Gennes theory of the cholesteric phase describes the chirality in the cholesteric phase well …

Red Rock Desert Learning Center Core Group Meeting: May 17, 2005, Red Rock Desert Learning Center

Reports (RRLC)

1. Introductions (5 min.)
2. Approval of Minutes from March 15, 2005 Meeting (5 min.)
3. Review of Project Issues & Concerns (30 min.)
   A. Discussion of Strategic Project Review
4. Update on Water Options and NEPA Timeline/Progress – Michael Reiland (15 min.)
5. Core Curriculum Development: Progress Report – Jeannie Klockow (15 min.)
6. Community Outreach – Nancy Flagg (15 min.)
   A. Key Messages
   B. List of environmental groups and media
   D. Revisit Core Group list
7. Standing Reports (20 minutes)
   A. Line and Space Architects – Les Wallach/Henry Tom
   B. BLM Capital Improvements – Michael Reiland
8. Committee Reports (10 min.)
   A. Building Committee – Angie …

Fence-Line Interactions Among Farmed And Free-Ranging Cervids: Preliminary Results, Kurt C. Vercauteren, Justin W. Fischer, Robert Pooler, Michael J. Lavelle, Greg Phillips

United States Department of Agriculture Wildlife Services: Staff Publications

Occurrences of disease outbreaks within and near captive cervid (mule deer (Odocoileus hemionus), white-tailed deer (Odocoileus virginianus), and Rocky Mountain elk (Cervus elaphus nelsoni)) farms have recently drawn attention to these facilities. Some state wildlife and agricultural agencies have pondered making double fencing mandatory or otherwise increasing regulation of captive operations. Diseases such as Chronic Wasting Disease (CWD) and Bovine Tuberculosis (bovine TB) are a threat to captive and free-ranging cervid populations. Concerns over these and other diseases being transmitted from captive to wild cervids, and vice versa, have increased. In most cases, captive …

Hopf Bifurcations And Horseshoes Especially Applied To The Brusselator, Steven R. Jones

Theses and Dissertations

In this paper we explore bifurcations, in particular the Hopf bifurcation. We study this especially in connection with the Brusselator, which is a model of certain chemical reaction-diffusion systems. After a thorough exploration of what a bifurcation is and what classifications there are, we give graphic representations of an occurring Hopf bifurcation in the Brusselator. When an additional forcing term is added, behavior changes dramatically. This includes the introduction of a horseshoe in the time map as well as a strange attractor in the system.

Klystron Linearizer For Use With 1.2 Mw 476 Mhz Klystrons In Pep-Ii Rf Systems, J. Fox, T. Mastorides, D. Teytelman, D. Van Winkle, Y. Zhou

Physics

The direct and comb loop feedback around the RF cavities in PEP-II is critical in reducing longitudinal instabilities driven by the cavity impedance. The non-linear 1.2 MW klystron is in the signal path for these feedback loops. As a result, the effective small-signal gain of the klystron at 85% saturation reduces the impedance control by factors of 5 to 20 as compared to a linear power amplifier. A klystron linearizer circuit has been developed which operates in series with the power amplifier and acts to equalize the small and large signal gains through the combination. The technique must implement a …

Prognosis Of Stage Ii Colon Cancer By Non-Neoplastic Mucosa Gene Expresssion Profiling, Alain Barrier, Sandrine Dudoit, Et Al.

U.C. Berkeley Division of Biostatistics Working Paper Series

Aims. This study assessed the possibility to build a prognosis predictor, based on non-neoplastic mucosa microarray gene expression measures, in stage II colon cancer patients. Materials and Methods. Non-neoplastic colonic mucosa mRNA samples from 24 patients (10 with a metachronous metastasis, 14 with no recurrence) were profiled using the Affymetrix HGU133A GeneChip. The k-nearest neighbor method was used for prognosis prediction using microarray gene expression measures. Leave-one-out cross-validation was used to select the number of neighbors and number of informative genes to include in the predictor. Based on this information, a prognosis predictor was proposed and its accuracy estimated by …

Endomorphism Rings Of Finite Global Dimension, Graham J. Leuschke

Mathematics - All Scholarship

For a commutative local ring R, consider (noncommutative) R-algebras lamda of the form lamda = End R(M) where M is a reflexive R-module with nonzero free direct summand. Such algebras lamda of finite global dimension can be viewed as potential substitutes for, or analogues of, a resolution of singularities of Spec R. For example, Van den Bergh has shown that a three-dimensional Gorenstein normal C-algebra with isolated terminal singularities has a crepant resolution of singularities if and only if it has such an algebra lamda with finite global dimension and which is maximal Cohen–Macaulay over R (a “noncommutative crepant resolution …

Generalized Analysis Model For Fringe Pattern Profilometry, Y. Hu, Jiangtao Xi, Z. Yang, Enbang Li, Joe F. Chicharo

Faculty of Informatics - Papers (Archive)

In this paper, a generalized analysis model for fringe pattern profilometry is presented. The new analysis model is derived mathematically, which describes the essential relationships between projected and deformed fringe patterns. With generalized analysis model, the projected fringe patterns used for profilometry can be arbitrary rather than being limited to be sinusoidal as those for the conventional approaches. Meanwhile, based on the proposed generalized model, a new algorithm is presented to reconstruct three-dimensional surfaces. Computer simulation results show that compared with the conventional model for fringe pattern profilometry, the generalized model and the proposed algorithm can significantly improve the three-dimensional …

Colon Cancer Prognosis Prediction By Gene Expression Profiling, Alain Barrier, Sandrine Dudoit, Et Al.

U.C. Berkeley Division of Biostatistics Working Paper Series

Aims. This study assessed the possibility to build a prognosis predictor, based on microarray gene expression measures, in stage II and III colon cancer patients. Materials and Methods. Tumour (T) and non-neoplastic mucosa (NM) mRNA samples from 18 patients (9 with a recurrence, 9 with no recurrence) were profiled using the Affymetrix HGU133A GeneChip. The k-nearest neighbour method was used for prognosis prediction using T and NM gene expression measures. Six-fold cross-validation was applied to select the number of neighbours and the number of informative genes to include in the predictors. Based on this information, one T-based and one NM-based …

Search For Zz And Zw Production In Pp̅ Collisions At √S=1.96 Tev, Darin Acosta, Kenneth A. Bloom, Collider Detector At Fermilab Collaboration

Kenneth Bloom Publications

We present a search for ZZ and ZW vector boson pair production in pp̅ collisions at √s =1.96 TeV using the leptonic decay channels ZZ→_llνν, ZZ→_{lll′ l′}, and ZW→_lll′ν. In a data sample corresponding to an integrated luminosity of 194 pb^-1 collected with the Collider Detector at Fermilab, 3 candidate events are found with an expected background of 1.0±0.2 events. We set a 95% confidence level upper limit of 15.2 pb on the cross section for ZZ and ZW production, compared to the standard model prediction of 5.0±0.4 pb.