Physical Sciences and Mathematics Commons^™

2013 Chesapeake Bay Sav Coverage, Sav Data Administrator, Virginia Institute Of Marine Science

Data

Abstract: The 2013 Chesapeake Bay SAV Coverage was mapped from 1:24,000 black and white aerial photography to assess water quality in the Bay. Each area of SAV was interpreted from the rectified photography and classified into one of four density classes by the percentage of cover. The SAV beds were entered into an SDE GIS fetaure class using the quality control procedures documented below. The dataset contains all SAV areas that were identified from the areas flown. Some areas that are presumed to contain no SAV were not flown. Some small beds, particularly along narrow tributaries may not have been …

Teaching Threshold 6: The Rise Of Homo Sapiens, Richard Simon, Mojgan Behmand, Thomas Burke, Esther Quaedackers, Seohyung Kim, Kiowa Bower, Neal Wolfe, James Cunningham, Cynthia Taylor, Martin Anderson, J. May, Philip Novak, Debbie Daunt, Jaime Castner, Ethan Annis, Amy Gilbert, Anne Reid, Suzanne Roybal, Alan Schut, Cynthia Brown, Harlan Stelmach

Cynthia Taylor

Teaching Big History, Richard B. Simon, Mojgan Behmand, Thomas Burke, Esther Quaedackers, Seohyung Kim, Kiowa Bower, Neal Wolfe, James B. Cunningham, Cynthia Taylor, Martin Anderson, J. Daniel May, Philip Novak, Debbie Daunt, Jaime Castner, Ethan Annis, Amy E. Gilbert, Anne Reid, Suzanne Roybal, Alan Schut, Cynthia Brown, Harlan Stelmach

Mojgan Behmand

Teaching Big History Or Teaching About Big History? Big History And Religion, Harlan Stelmach

Harlan Stelmach

Groundwater Lowering And Stream Incision Rates In The Central Appalachian Mountains Of West Virginia, Usa, Gregory S. Springer, Holly A. Poston, Ben Hardt, Harold D. Rowe

International Journal of Speleology

Surface channel incision rates are of broad geomorphological interest because they set the boundary conditions for landscape change by affecting changes in local relief and hillslope angles. We report groundwater table lowering rates associated with subsurface Buckeye Creek and the surface channel of Spring Creek in southeastern West Virginia, USA. The mountainous watersheds have drainage areas of 14 km² and 171 km², respectively. The lowering rates are derived from U/Th-dating of stalagmites and the paleomagnetostratigraphy of clastic sediments in Buckeye Creek Cave. The oldest stalagmites have a minimum age of 0.54 Ma and we use a minimum …

Can Acute Dermal Systemic Toxicity Tests Be Replaced With Oral Tests? A Comparison Of Route-Specific Systemic Toxicity And Hazard Classifications Under The Globally Harmonized System Of Classification And Labelling Of Chemicals (Ghs), Nigel P. Moore, David J. Andrew, Donald L. Bjerke, Stuart Creton, David Dreher, Thomas Holmes, Pilar Prieto, Troy Seidle, Tim G. Rowan

Troy Seidle, PhD

Acute systemic toxicity data (LD50 values) and hazard classifications derived in the rat following oral administration and dermal application have been analysed to examine whether or not orally-derived hazard classification or LD50 values can be used to determine dermal hazard classification. Comparing the oral and dermal classifications for 335 substances derived from oral and dermal LD50 values respectively revealed 17% concordance, and indicated that 7% of substances would be classified less severely while 76% would be classified more severely if oral classifications were applied directly to the dermal route. In contrast, applying the oral LD50 values within the dermal classification …

An Evaluation Of The Us High Production Volume (Hpv) Chemical-Testing Programme: A Study In (Ir)Relevance, Redundancy And Retro Thinking, Andrew Nicholson, Jessica Sandler, Troy Seidle

Troy Seidle, PhD

Under the US Environmental Protection Agency (EPA) High Production Volume (HPV) Challenge Programme, chemical companies have volunteered to conduct screening-level toxicity tests on approximately 2800 widely-used industrial chemicals. Participating companies are committed to providing available toxicity information to the EPA and presenting testing proposals for review by the EPA and posting on the EPA Web site as public information. People for the Ethical Treatment of Animals (PETA) and a coalition of animal protection organisations have reviewed all the test plans submitted by the participating chemical companies for compliance with the original HPV framework, as well as with animal welfare guidelines …

The Development Of New Concepts For Assessing Reproductive Toxicity Applicable To Large Scale Toxicological Programmes, S. Bremer, C. Pellizzer, S. Hoffmann, T. Seidle, T. Hartung

Troy Seidle, PhD

Large scale toxicological testing programmes which are currently ongoing such as the new European chemical legislation REACH require the development of new integrated testing strategies rather than applying traditional testing schemes to thousands of chemicals. The current practice of requiring in vivo testing for every possible adverse effect endanger the success of these programmes due (i) to limited testing facilities and sufficient capacity of scientific/technical knowledge for reproductive toxicity; (ii) an unacceptable number of laboratory animals involved (iii) an intolerable number of chemicals classified as false positive.

A key aspect of the implementation of new testing strategies is the determination …

A Modular One-Generation Reproduction Study As A Flexible Testing System For Regulatory Safety Assessment, Richard Vogel, Troy Seidle, Horst Spielmann

Troy Seidle, PhD

The European Union’s Registration, Evaluation and Authorisation of Chemicals (REACH) legislation mandates testing and evaluation of approximately 30,000 existing substances within a short period of time, beginning with the most widely used “high production volume” (HPV) chemicals. REACH testing requirements for the roughly 3000 HPV chemicals specify three separate tests for reproductive toxicity: two developmental toxicity studies on different animal species (OECD Test Guideline 414) and a two-generation reproduction toxicity study (OECD TG 416). These studies are highly costly in both economic and animal welfare terms. OECD TG 416 is a fertility study intended to evaluate reproductive performance of animals …

Strain-Driven Growth Of Gaas(111) Quantum Dots With Low Fine Structure Splitting, Paul J. Simmonds

Physics Faculty Publications and Presentations

Symmetric quantum dots (QDs) on (111)-oriented surfaces are promising candidates for generating polarization-entangled photons due to their low excitonic fine structure splitting(FSS). However, (111) QDs are difficult to grow. The conventional use of compressive strain to drive QD self-assembly fails to form 3D nanostructures on (111) surfaces. Instead, we demonstrate that (111) QDs self-assemble under tensile strain by growing GaAs QDs on an InP(111)A substrate. Tensile GaAs self-assembly produces a low density of QDs with a symmetric triangular morphology. Coherent, tensile QDs are observed without dislocations, and the QDs luminescence at room temperature. Single QD measurements reveal low FSS with …

Nuclear Structure Aspects Of Neutrinoless Double Beta Decay, B. Alex Brown, Mihai Horoi, Roman A. Sen′Kov

Publications and Research

We decompose the neutrinoless double-beta decay matrix elements into sums of products over the intermediate nucleus with two less nucleons. We find that the sum is dominated by the J^pi=0^+ ground state of this intermediate nucleus for both the light and heavy neutrino decay processes. This provides a new theoretical tool for comparing and improving nuclear structure models. It also provides the connection to two-nucleon transfer experiments.

The Ecological Genomic Basis Of Salinity Adaptation In Tunisian Medicago Truncatula, Maren L. Friesen, Eric J.B. Von Wettberg, Mounawer Badri, Ken S. Moriuchi, Fathi Barhoumi, Peter L. Chang, Sonia Cuellar-Ortiz, Matilde A. Cordeiro, Wendy T. Vu, Soumaya Arraouadi, Naceur Djébali, Kais Zribi, Yazid Badri, Stephanie S. Porter, Mohammed Elarbi Aouani, Douglas R. Cook, Sharon Y. Strauss, Sergey V. Nuzhdin

College of Agriculture and Life Sciences Faculty Publications

Background: As our world becomes warmer, agriculture is increasingly impacted by rising soil salinity and understanding plant adaptation to salt stress can help enable effective crop breeding. Salt tolerance is a complex plant phenotype and we know little about the pathways utilized by naturally tolerant plants. Legumes are important species in agricultural and natural ecosystems, since they engage in symbiotic nitrogen-fixation, but are especially vulnerable to salinity stress. Results: Our studies of the model legume Medicago truncatula in field and greenhouse settings demonstrate that Tunisian populations are locally adapted to saline soils at the metapopulation level and that saline origin …

Enzymes From Fungal And Plant Origin Required For Chemical Diversification Of Insecticidal Loline Alkaloids In Grass-Epichloë Symbiota, Juan Pan, Minakshi Bhardwaj, Padmaja Nagabhyru, Robert B. Grossman, Christopher L. Schardl

Chemistry Faculty Publications

The lolines are a class of bioprotective alkaloids that are produced by Epichloë species, fungal endophytes of grasses. These alkaloids are saturated 1-aminopyrrolizidines with a C2 to C7 ether bridge, and are structurally differentiated by the various modifications of the 1-amino group: -NH₂ (norloline), -NHCH₃ (loline), -N(CH₃)₂ (N-methylloline), -N(CH₃)Ac (N-acetylloline), -NHAc (N-acetylnorloline), and -N(CH₃)CHO (N-formylloline). Other than the LolP cytochrome P450, which is required for conversion of N-methylloline to N-formylloline, the enzymatic steps for loline diversification have not yet been established. …

Jordan Algebras And The Exceptional Lie Algebra F4, Ian M. Anderson

Tutorials on... in 1 hour or less

This worksheet analyzes the structure of the Jordan algebra J(3, O) and its split and exceptional versions. The algebra of derivations is related to the exceptional Lie algebra f4.

Cartan Subalgebras, Compact Roots And The Satake Diagram For Su(2, 2), Ian M. Anderson

Tutorials on... in 1 hour or less

In this worksheet we use the 15-dimensional real Lie algebra su(2, 2) to illustrate some important points regarding the general structure theory and classification of real semi-simple Lie algebras.

1. Recall that a real semi-simple Lie algebra g is called a compact Lie algebra if the Killing form is negative definite. The Lie algebra g is compact if and only if all the root vectors for any Cartan subalgebra are purely imaginary. However, if the root vectors are purely imaginary for some choice of Cartan subalgebra it is not necessarily true that the Lie algebra is compact.

2. A real …

Gi Science, Not Giscience, Andreas Christoffer Hall

Journal of Spatial Information Science

Letter to editors

Spatial Mathematics: Theory And Practice Through Mapping By Sandra Lach Arlinghaus And Joseph J. Kerski, Azadeh Mousavi

Journal of Spatial Information Science

Book review

Similarity Of Trajectories Taking Into Account Geographic Context, Maike Buchin, Somayeh Dodge, Bettina Speckmann

Journal of Spatial Information Science

The movements of animals, people, and vehicles are embedded in a geographic context. This context influences the movement and may cause the formation of certain behavioral responses. Thus, it is essential to include context parameters in the study of movement and the development of movement pattern analytics. Advances in sensor technologies and positioning devices provide valuable data not only of moving agents but also of the circumstances embedding the movement in space and time. Developing knowledge discovery methods to investigate the relation between movement and its surrounding context is a major challenge in movement analysis today. In this paper we …

Geocoding Location Expressions In Twitter Messages: A Preference Learning Method, Wei Zhang, Judith Gelernter

Journal of Spatial Information Science

Resolving location expressions in text to the correct physical location, also known as geocoding or grounding, is complicated by the fact that so many places around the world share the same name. Correct resolution is made even more difficult when there is little context to determine which place is intended, as in a 140-character Twitter message, or when location cues from different sources conflict, as may be the case among different metadata fields of a Twitter message. We used supervised machine learning to weigh the different fields of the Twitter message and the features of a world gazetteer to create …

Road Network Selection For Small-Scale Maps Using An Improved Centrality-Based Algorithm, Roy Weiss, Robert Weibel

Journal of Spatial Information Science

The road network is one of the key feature classes in topographic maps and databases. In the task of deriving road networks for products at smaller scales, road network selection forms a prerequisite for all other generalization operators, and is thus a fundamental operation in the overall process of topographic map and database production. The objective of this work was to develop an algorithm for automated road network selection from a large-scale (1:10,000) to a small-scale database (1:200,000). The project was pursued in collaboration with swisstopo, the national mapping agency of Switzerland, with generic mapping requirements in mind. Preliminary experiments …

Twitter Location (Sometimes) Matters: Exploring The Relationship Between Georeferenced Tweet Content And Nearby Feature Classes, Stefan Hahmann, Ross S. Purves, Dirk Burghardt

Journal of Spatial Information Science

In this paper, we investigate whether microblogging texts (tweets) produced on mobile devices are related to the geographical locations where they were posted. For this purpose, we correlate tweet topics to areas. In doing so, classified points of interest from OpenStreetMap serve as validation points. We adopted the classification and geolocation of these points to correlate with tweet content by means of manual, supervised, and unsupervised machine learning approaches. Evaluation showed the manual classification approach to be highest quality, followed by the supervised method, and that the unsupervised classification was of low quality. We found that the degree to which …

Enso Teleconnection Pattern Changes Over The Southeastern United States Under A Climate Change Scenario In Cmip5 Models, Ji-Hyun Oh, D.W. Shin, Steven D. Cocke, Guillermo A. Baigorria

School of Natural Resources: Faculty Publications

A strong teleconnection exists between the sea surface temperature (SST) over the tropical Pacific and the winter precipitation in the southeastern United States (SE US).This feature is adopted to validate the fidelity of Coupled Model Intercomparison Project Phase 5 (CMIP5) in this study. In addition, the authors examine whether the teleconnection pattern persists in the future under a global warming scenario. Generally, most of the eight selected models show a positive correlation between November SST over Ni˜no 3 region and December–February (DJF) mean daily precipitation anomalies over the SE US, consistent with the observation. However, the models with poor realization …

Identification Of Hyperhalogens In Agn(Bo2)M (N = 1–3, M = 1–2) Clusters: Anion Photoelectron Spectroscopy And Density Functional Calculations, Xiang-Yu Kong, Hong-Guang Xu, Pratik Koirala, Wei-Jun Zheng, Anil K. Kandalam, Puru Jena

Anil K. Kandalam

No abstract provided.

Galaxy Zoo: Candels Barred Discs And Bar Fractions, B. D. Simmons, Thomas Melvin, Chris Lintott, Karen L. Masters, Kyle W. Willett, William C. Keel, R. J. Smethurst, Edmond Cheung, Robert C. Nichol, Kevin Schawinski, Michael Rutkowski, Jeyhan S. Kartaltepe, Eric F. Bell, Kevin R. V. Casteels, Christopher J. Conselice, Omar Almaini, Henry C. Ferguson, Lucy Fortson, William Hartley, Dale D. Kocevski, Anton M. Koekemoer, Daniel H. Mcintosh, Alice Mortlock, Jeffrey A. Newman, Jamie Owensworth, Steven Bamford, Tomas Dahlen, Sandra M. Faber, Steven L. Finkelstein, Adriano Fontana, Audrey Galametz, N. A. Grogin, Ruth Grützbauch, Yicheng Guo, Boris Häußler, Kian J. Jek, Sugata Kaviraj, Ray A. Lucas, Michael Peth, Mara Salvato, Tommy Wiklind, Stijn Wuyts

Physics and Astronomy Faculty Publications

The formation of bars in disc galaxies is a tracer of the dynamical maturity of the population.

The remainder of the abstract is available at:

http://dx.doi.org/10.1093/mnras/stu1817

Investigating The Links Between Ozone And Organic Aerosol Chemistry In A Biomass Burning Plume From A Prescribed Fire In California Chaparral, M. J. Alvarado, C. R. Lonsdale, Robert Yokelson, S. K. Akagi, H. Coe, J. S. Craven, E. V. Fischer, G. R. Mcmeeking, J. H. Seinfeld, T. Soni, J. W. Taylor, D. R. Weise, C. E. Wold

Chemistry and Biochemistry Faculty Publications

Within minutes after emission, rapid, complex photochemistry within a biomass burning smoke plume can cause large changes in the concentrations of ozone (O₃) and organic aerosol (OA). Being able to understand and simulate this rapid chemical evolution under a wide variety of conditions is a critical part of forecasting the impact of these fires on air quality, atmospheric composition, and climate. Here we use version 2.1 of the Aerosol Simulation Program (ASP) to simulate the evolution of O₃ and secondary organic aerosol (SOA) within a young biomass burning smoke plume from the Williams prescribed burn in chaparral, …

A Central Support System Can Facilitate Implementation And Sustainability Of A Classroom-Based Undergraduate Research Experience (Cure) In Genomics, David Lopatto, Charles Hauser, Christopher J. Jones, Don Paetkau, Randall J. Dejong

University Faculty Publications and Creative Works

In their 2012 report, the President’s Council of Advisors on Science and Technology advocated “replacing standard science laboratory courses with discovery-based research courses”—a challenging proposition that presents practical and pedagogical difficulties. In this paper, we describe our collective experiences working with the Genomics Education Partnership, a nationwide faculty consortium that aims to provide undergraduates with a research experience in genomics through a scheduled course (a classroom-based undergraduate research experience, or CURE). We examine the common barriers encountered in implementing a CURE, program elements of most value to faculty, ways in which a shared core support system can help, and the …

Optimizing Data Movement In Hybrid Analytic Systems, Patrick Michael Leyshock

Dissertations and Theses

Hybrid systems for analyzing big data integrate an analytic tool and a dedicated data-management platform, storing data and operating on the data at both components. While hybrid systems have benefits over alternative architectures, in order to be effective, data movement between the two hybrid components must be minimized. Extant hybrid systems either fail to address performance problems stemming from inter-component data movement, or else require the user to explicitly reason about and manage data movement. My work presents the design, implementation, and evaluation of a hybrid analytic system for array-structured data that automatically minimizes data movement between the hybrid components. …

Investigating Broadband Variability Of The Tev Blazar 1es 1959+650, P. T. Reynolds, Veritas

Physical Sciences Publications

We summarize broadband observations of the TeV-emitting blazar 1ES 1959+650, including optical R-band observations by the robotic telescopes Super-LOTIS and iTelescope, UV observations by Swift Ultraviolet and Optical Telescope, X-ray observations by the Swift X-ray Telescope, high-energy gamma-ray observations with the Fermi Large Area Telescope, and very-high-energy (VHE) gamma-ray observations by VERITAS above 315 GeV, all taken between 2012 April 17 and 2012 June 1 (MJD 56034 and 56079). The contemporaneous variability of the broadband spectral energy distribution is explored in the context of a simple synchrotron self Compton (SSC) model. In the SSC emission scenario, we find that the …

Linear Operators That Preserve Graphical Properties Of Matrices: Isolation Numbers, Leroy B. Beasley, Seok-Zun Song, Young Bae Jun

Mathematics and Statistics Faculty Publications

Let A be a Boolean {0, 1} matrix. The isolation number of A is the maximum number of ones in A such that no two are in any row or any column (that is they are independent), and no two are in a 2 × 2 submatrix of all ones. The isolation number of A is a lower bound on the Boolean rank of A. A linear operator on the set of m × n Boolean matrices is a mapping which is additive and maps the zero matrix, O, to itself. A mapping strongly preserves a set, S, if it …

The Fine-Scale Habitat Use Of Risso’S Dolphins Off Bardsey Island, Cardigan Bay (Uk), Marijke N. De Boer, Sonja Eisfeld, Mark P. Simmonds

Mark P. Simmonds, OBE

The main objectives of this study were (1) to estimate the population size of Risso’s dolphins off Bardsey Island using mark-recapture techniques (De Boer et al., 2013); and (2) to study habitat-use in relation to fine-scale oceanographic features. This work provides preliminary information on the habitat-use of Risso’s dolphins and will benefit future studies, along with the development of effective conservation measures for this species throughout the region.