Physical Sciences and Mathematics Commons^™

Daq Software Contributions, Absolute Scale Energy Calibration And Background Evaluation For The Nova Experiment At Fermilab, Eric Flumerfelt

Doctoral Dissertations

The NOvA (NuMI Off-axis ν_e [nu_e] Appearance) Experiment is a long-baseline accelerator neutrino experiment currently in its second year of operations. NOvA uses the Neutrinos from the Main Injector (NuMI) beam at Fermilab, and there are two main off-axis detectors: a Near Detector at Fermilab and a Far Detector 810 km away at Ash River, MN. The work reported herein is in support of the NOvA Experiment, through contributions to the development of data acquisition software, providing an accurate, absolute-scale energy calibration for electromagnetic showers in NOvA detector elements, crucial to the primary electron neutrino search, and through an …

Gas-Phase Electron Diffraction From Laser-Aligned Molecules, Jie Yang, Martin Centurion

Martin Centurion Publications

Electron diffraction is a valuable tool to capture structural information from molecules in the gas phase. However, the information contained in the diffraction patterns is limited due to the random orientation of the molecules. Additional structural information can be retrieved if the molecules are aligned. Molecules can be impulsively aligned with femtosecond laser pulses, producing a transient alignment. The alignment persists only for a time on the order of a picosecond, so a pulsed electron gun is needed to record the diffraction patterns. In this manuscript, we describe the alignment process and show the changes in the diffraction pattern as …

Naturalists’ Perspectives On The Use Of Mobile Technology During A Nature Hike, Aubin Marishka Radzewicz St. Clair

Master's Theses

Naturalists act as our link between scientific knowledge and the public’s understanding of natural history and conservation efforts. In order for them to succeed, they need access to reference materials as well as up-to-date information (Mankin, Warner, & Anderson, 1999). Incorporating mobile technology (i.e. tablets) into naturalists’ endeavors in natural history and environmental education can be used as supportive and educational tools. My project investigated how newly trained naturalists used tablet technology while leading groups of children on nature hikes. I investigated naturalists’ views on the use of mobile technology as a tool during the hikes. My research was guided …

Climate Impact On Groundwater Flow Processes In The Cedar Creek Watershed And Cedarburg Bog, Jackson Graham

Theses and Dissertations

A local-scale groundwater-flow model of the Cedar Creek Watershed and Cedarburg Bog area was constructed to determine the effects of future changes in temperature and precipitation on water resources. The Cedar Creek Watershed is a 330 km2 sub-basin of the Milwaukee River Watershed located about 30 km north of Milwaukee. The importance of this watershed lies in its location at the sub-continental divide separating the Mississippi River Basin from the Great Lakes Basin. The coupled steady-state and transient flow models incorporate interaction between surface water features and groundwater-surface water interactions. The 4 layer model simulates the influence of recharge on …

Functional Diversity Of Regional Marine Paleocommunities After The Permo-Triassic Mass Extinction: Case Studies From Panthalassa And Paleo-Tethys, Ashley Ann Dineen

Theses and Dissertations

The Permo-Triassic mass extinction (PTME) was the largest biodiversity collapse in Earth’s history. Published data has been interpreted as indicating that marine ecological devastation following the PTME was protracted and may have lasted 5 million years into the Middle Triassic (Anisian). However, a review of previous literature shows that understanding of biotic recovery is usually based on only a few components of the ecosystem, such as on taxonomic diversity, a single genus/phylum, or shallow water facies. Typically, paleocommunities are considered fully recovered when dominance and diversity are regained and normal ecosystem functioning has resumed. However, to more fully characterize Triassic …

Three Essays On Enhancing Clinical Trial Subject Recruitment Using Natural Language Processing And Text Mining, Euisung Jung

Theses and Dissertations

Patient recruitment and enrollment are critical factors for a successful clinical trial; however, recruitment tends to be the most common problem in most clinical trials. The success of a clinical trial depends on efficiently recruiting suitable patients to conduct the trial. Every clinical trial research has a protocol, which describes what will be done in the study and how it will be conducted. Also, the protocol ensures the safety of the trial subjects and the integrity of the data collected. The eligibility criteria section of clinical trial protocols is important because it specifies the necessary conditions that participants have to …

Predictability Of Sea Ice Near Bifurcations, Dawn Marie Kopacz

Theses and Dissertations

There is evidence in Earth’s history of relatively stable climate regimes abruptly transitioning to alternative states. It has been argued that the greatest potential for such abrupt transitions in Earth’s system in the near future is located in the Arctic. Here we analyze the Arctic sea ice evolution of two current generation climate models that exhibit critical transitions. We demonstrate the detectability of two early warning signals: increased variance and increased autocorrelation. We introduce another metric that forewarns of abrupt changes in sea ice; a decrease in predictability before the threshold points. Observations of Arctic sea ice extent are searched …

Three Research Essays On The Effects Of Culture Across It Diffusion Within Social Networks, Organizations, And Hospitals, Yu Zhao

Theses and Dissertations

This dissertation focuses on two research streams: IT diffusion and culture, and each can be examined in various contexts. Specifically, this study investigates IT diffusion through online social network use, knowledge sharing towards the general organizational information systems, and hospital information systems usage. In terms of culture, espoused national cultural values, IT occupational subculture, and organizational cultural variables are examined in the following essays.

Essay1: Espoused National Cultural Values and Online Social Network Use: Towards an Extension of UTAUT

Prior research has developed a number of models for examining the acceptance and use of technology. This paper extends the unified …

Historical Summer Distribution Of The Endangered North Atlantic Right Whale (Eubalaena Glacialis): A Hypothesis Based On Environmental Preferences Of A Congeneric Species, Sophie Monserrat, Maria G. Pennino, Tim D. Smith, Randall R. Reeves, Christine N. Meynard, David M. Kaplan, Ana S.L. Rodrigues

VIMS Articles

Aim: To obtain a plausible hypothesis for the historical distribution of North Atlantic right whales (NARWs) (Eubalaena glacialis) in their summer feeding grounds. Previously widespread in the North Atlantic, after centuries of hunt- ing, these whales survive as a small population off eastern North America. Because their exploitation began before formal records started, information about their historical distribution is fragmentary.

The Robinson-Schensted Correspondence And A2-Web Bases, Matthew Housley, Heather M. Russell, Julianna Tymoczko

Mathematics Sciences: Faculty Publications

We study natural bases for two constructions of the irreducible representation of the symmetric group corresponding to [n, n, n]: the reduced web basis associated to Kuperberg’s combinatorial description of the spider category; and the left cell basis for the left cell construction of Kazhdan and Lusztig. In the case of [n, n], the spider category is the Temperley-Lieb category; reduced webs correspond to planar matchings, which are equivalent to left cell bases. This paper compares the image of these bases under classical maps: the Robinson–Schensted algorithm between permutations and Young tableaux and Khovanov–Kuperberg’s bijection between Young tableaux and reduced …

Life’S Lessons In The Lab: A Summer Of Learning From Undergraduate Research Experiences, Louis S. Nadelson, Don Warner, Eric Brown

Chemistry and Biochemistry Faculty Publications and Presentations

Research experiences for undergraduates (REUs) seek to increase the participating students’ knowledge and perceptions of scientific research through engagement in laboratory research and related activities. Various REU outcomes have been investigated, including influence on participants’ content knowledge, career plans, and general perceptions of their domains of research. The complexity of REUs and dynamic nature of student development provide opportunity for exploring how REUs influence student growth. Our research focused on first and second-year college students who participated in a residential REU program that took place in a chemistry department in a metropolitan university in the western United States. We assessed …

Upper Plate Reverse Fault Reactivation And The Unclamping Of The Megathrust During The 2014 Northern Chile Earthquake Sequence, Gabriel González, Pablo Salazar, John P. Loveless, Richard W. Allmendinger, Felipe Aron, Mahesh Shrivastava

Geosciences: Faculty Publications

After 137 years without a great earthquake, the Mw 8.1 Pisagua event of 1 April 2014 occurred in the central portion of the southern Peru–northern Chile subduction zone. This megathrust earthquake was preceded by more than 2 weeks of foreshock activity migrating ∼3.5 km/day toward the mainshock hypocenter. This foreshock sequence was triggered by an Mw 6.7 earthquake on a reverse fault in the upper plate that strikes at a high angle to the trench, similar to well-documented reverse faults onshore. These margin-oblique reverse faults accommodate north-south shortening resulting from subduction across a plate boundary that is curved in map …

A Nonabelian Landau-Ginzburg B-Model Construction, Ryan Thor Sandberg

Theses and Dissertations

The Landau-Ginzburg (LG) B-Model is a significant feature of singularity theory and mirror symmetry. Krawitz in 2010, guided by work of Kaufmann, provided an explicit construction for the LG B-model when using diagonal symmetries of a quasihomogeneous, nondegenerate polynomial. In this thesis we discuss aspects of how to generalize the LG B-model construction to allow for nondiagonal symmetries of a polynomial, and hence nonabelian symmetry groups. The construction is generalized to the level of graded vector space and the multiplication developed up to an unknown factor. We present complete examples of nonabelian LG B-models for the polynomials x^2y + y^3, …

A Character Style Library For Syriac Manuscripts, Nicholas Howe, Alice Yang, Michael Penn

Computer Science: Faculty Publications

Paleographers study ancient and historical handwriting in order to learn more about documents of significant interest and their creators. Computational tools and methods can aid this task in numerous ways, particularly for languages and scripts that are not widely known today. One project currently underway seeks to gather a collection of securely dated letter samples from Syriac documents dating between 500 and 1100 CE. The set comprises over 60,000 human selected character samples. This paper gives details on the collection and describes the automatic techniques used to process the initial human input so as to produce high-quality segmented character samples …

On A Convex Set With Nondifferentiable Metric Projection, Shyan S. Akmal, Nguyen Mau Nam, J. J. P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

A remarkable example of a nonempty closed convex set in the Euclidean plane for which the directional derivative of the metric projection mapping fails to exist was constructed by A. Shapiro. In this paper, we revisit and modify that construction to obtain a convex set with smooth boundary which possesses the same property.

Linkage Analysis And Compositional Studies Of Β-Glucan From Saccharomyces Cerevisiae And Compositional Studies Of Mannan From Candida Albicans, Clara Arthur

Electronic Theses and Dissertations

The efficacy of a novel carbohydrate extraction procedure was investigated with methylation analysis and alditol acetate method by Gas Chromatography-Mass Spectrometry. A published extraction procedure for β-glucans was compared to one developed in house. Both procedures gave a dominant glucose peak in the Gas chromatogram indicative of successful β-glucan isolation. Further linkage studies showed four linkage positions for β-glucans isolated with the published method; terminal, 1,3-linkage, 1,6-linkage and 1,3,6-linkage, while β-glucans isolated using the new method showed six linkage positions; terminal, 1,3-linkage, 1,6-linkage, 1,4-linkage, 1,2,3-linkage and 1,3,6-linkage. Diminishing β-glucan linkage peaks in the chromatogram for the published method indicated structure …

Synthesis Of Phenothiazinium Derivatives, Selorm J. Fanah

Electronic Theses and Dissertations

Photodynamic therapy (PDT) employs photosensitizing drugs for treating cancer. Once introduced into the body and localized in tumor cells, these photosensitizers are irradiated with light to produce active singlet oxygen radicals which kill cancer cells. The current drugs used in PDT have low quantum yield and always require a high energy radiation (normally laser). There is always a need for more effective drugs that have a high quantum yield and can be activated by visible light, in order to eliminate side effects caused by laser radiations.

In this work we synthesized derivatives of phenothiazine and phenothiazinium chromophores from the commercially …

The Ecology And Evolution Of Natal Philopatry In Migratory Songbirds Breeding In Managed Habitats, Jenna A. Cava

All Theses And Dissertations

Knowledge of which cues attract natal dispersers back to natal areas is important for conservation because these cues could be used to attract breeders to source habitat or discourage breeders from settling in sink habitat. We examined the influence of intrinsic and extrinsic variables on natal philopatry using two metrics, short-distance natal dispersal and the probability of philopatry to the natal field, in two obligate grassland bird species breeding in an agricultural landscape: the Bobolink (Dolichonyx oryzivorus) and Savannah Sparrow (Passerculus sandwichensis). We also measured heritability and evolvability of morphological traits in the Savannah Sparrow. During 2002-2014 we detected 90 …

Prognostic Role Of Serum Chloride Levels In Acute Decompensated Heart Failure, Justin L. Grodin, Jennifer Simon, Rory Hachamovitch, Yuping Wu, Gregory Jackson, Meghana Halkar, Randall C. Starling, Jeffrey M. Testani, W.H. Wilson Tang

Mathematics and Statistics Faculty Publications

BACKGROUND: Acute decompensated heart failure (ADHF) can be complicated by electrolyte abnormalities, but the major focus has been concentrated on the clinical significance of serum sodium levels.

Simulating The Impact Of Diet And Exercise On Blood Glucose Level For People With Type 2 Diabetes, Md Abdul Halim Sarkar

Theses and Dissertations

This thesis describes the design of a discrete-event simulator that tracks the blood glucose level and glycated hemoglobin level as a person goes through her daily diet and exercise activities. This thesis also reports results of simulations performed using the simulator that show the changes in blood glucose level and glycated hemoglobin level as a diabetic person makes specific changes to her diet/exercise routine.

Comment On "Role Of Potentials In The Aharonov-Bohm Effect", Yakir Aharonov, Eliahu Cohen, Daniel Rohrlich

Mathematics, Physics, and Computer Science Faculty Articles and Research

Are the electromagnetic scalar and vector potentials dispensable? Vaidman [Phys. Rev. A 86, 040101(R) (2012)] has suggested that local interactions of gauge-invariant quantities, e.g., magnetic torques, suffice for the description of all quantum electromagnetic phenomena. We analyze six thought experiments that challenge this suggestion. All of them have explanations in terms of local interactions of gauge-dependent quantities, and, in addition, some have explanations in terms of nonlocal interactions of gauge-invariant quantities. We claim, however, that two of our examples have no gauge-invariant formal description and that, in general, no local description can dispense with electromagnetic potentials.

Historical And Existing Vascular And Bryophyte Flora, Former Blue Heron Paper Mill, Willamette Falls, Oregon City, Oregon, John A. Christy, Philip Gaddis

Institute for Natural Resources Publications

Willamette Falls has long been a focus of botanical interest, but industrial development at the site has limited public access for over a century. The closure of the Blue Heron paper mill on the south bank of the river, and proposed redevelopment of the site, has given planners an opportunity to revisit this part of the falls and identify its current flora. As part of the preconstruction planning process for public access to the falls, Metro contracted John Christy to document the historical and existing vascular flora on the site, and Philip Gaddis joined us to document the bryophyte flora. …

Feasibility Of Using Virtual Unenhanced Images To Replace Pre-Contrast Images In Multiphase Renal Ct Examinations, Dawn Olivia Popnoe

Dissertations & Theses (Open Access)

Multiphase renal CT exams are a commonly used imaging technique for the diagnosis of renal masses. The pre-contrast, or true unenhanced (TUE), image provides a baseline for enhancement measurements which is an important criteria used to characterize renal lesions, consequently it is crucial that CT numbers measured in TUE images be accurate. The purpose of this work is to assess the feasibility of replacing TUE with virtual unenhanced (VUE) images derived from DECT data in renal CT exams. Eliminating TUE image acquisition would reduce patient dose and increase patient throughput, improving clinical efficiency.

A retrospective study was conducted for 60 …

Computational Modeling Of Rna-Small Molecule And Rna-Protein Interactions, Lu Chen

Dissertations & Theses (Open Access)

The past decade has witnessed an era of RNA biology; despite the considerable discoveries nowadays, challenges still remain when one aims to screen RNA-interacting small molecule or RNA-interacting protein. These challenges imply an immediate need for cost-efficient while predictive computational tools capable of generating insightful hypotheses to discover novel RNA-interacting small molecule or RNA-interacting protein. Thus, we implemented novel computational models in this dissertation to predict RNA-ligand interactions (Chapter 1) and RNA-protein interactions (Chapter 2).

Targeting RNA has not garnered comparable interest as protein, and is restricted by lack of computational tools for structure-based drug design. To test the potential …

Quantification Of Imrt Severity Scores For Improvement Of Fmea Results, Jacqueline T. Faught

Dissertations & Theses (Open Access)

Accurate delivery of intensity modulation radiation therapy (IMRT) requires perfect execution of a long, complicated chain of events; failure of any component of this process may contribute to dose delivery errors, compromising treatment quality and, more importantly, patient safety. Prospective, process-wide risk mitigation techniques are becoming more prevalent in radiotherapy to establish comprehensive quality management (QM) programs, such as failure modes and effects analysis (FMEA). The subjective nature of the ordinal scores used for FMEA leads questionable reliability and validity of the results. Additionally, physics components are commonly grouped together, leaving out valuable details important to physics QM. While the …

Precision Measurement Of The Longitudinal Double-Spin Asymmetry For Inclusive Jet Production In Polarized Proton Collisions At S√=200  Gev, Adam Gibson-Even, Shirvel Stanislaus, Donald Koetke, Star Collaboration

Physics and Astronomy Faculty Publications

We report a new measurement of the midrapidity inclusive jet longitudinal double-spin asymmetry, ALL, in polarized pp collisions at center-of-mass energy s√=200  GeV. The STAR data place stringent constraints on polarized parton distribution functions extracted at next-to-leading order from global analyses of inclusive deep-inelastic scattering (DIS), semi-inclusive DIS, and RHIC pp data. The measured asymmetries provide evidence at the 3σ level for positive gluon polarization in the Bjorken-x region x>0.05.

Improving The Solution Time Of Integer Programs By Merging Knapsack Constraints With Cover Inequalities, Fabio Vitor

Mathematics Faculty Publications

Integer Programming is used to solve numerous optimization problems. This class of mathematical models aims to maximize or minimize a cost function restricted to some constraints and the solution must be integer. One class of widely studied Integer Program (IP) is the Multiple Knapsack Problem (MKP). Unfortunately, both IPs and MKPs are NP-hard, potentially requiring an exponential time to solve these problems.

Utilization of cutting planes is one common method to improve the solution time of IPs. A cutting plane is a valid inequality that cuts off a portion of the linear relaxation space. This thesis presents a new class …

The Local Cygnus Cold Cloud And Further Constraints On A Local Hot Bubble., Geoffrey Robert Lentner

Electronic Theses and Dissertations

Recent studies of the local interstellar medium have identified regions of nearby cold neutral gas with unexpected low temperatures and high pressures well within the boundaries of the local cavity (Meyer et al., 2006). Now, a multi-wavelength study of the local Leo cold cloud (LLCC) has strengthened our understanding of this apparent conflict with the conventional view of this environment (Peek et al., 2011, Meyer et al., 2012). The soft X-ray background observed here cannot be completely accounted for by a local hot bubble model (Snowden et al., 2015). Interstellar absorption of Na I (D2 λ5889.591 and D1 λ5895.924) was …

Vibrational Energy Levels Of The Simplest Criegee Intermediate (Ch₂Oo) From Full-Dimensional Lanczos, Mctdh, And Multimode Calculations, Hua-Gen Yu, Steve Alexandre Ndengué, Jun Li, Richard Dawes, Hua Guo

Chemistry Faculty Research & Creative Works

Accurate vibrational energy levels of the simplest Criegee intermediate (CH₂OO) were determined on a recently developed ab initio based nine-dimensional potential energy surface using three quantum mechanical methods. the first is the iterative Lanczos method using a conventional basis expansion with an exact Hamiltonian. the second and more efficient method is the multi-configurational time-dependent Hartree (MCTDH) method in which the potential energy surface is refit to conform to the sums-of-products requirement of MCTDH. Finally, the energy levels were computed with a vibrational self-consistent field/virtual configuration interaction method in MULTIMODE. the low-lying levels obtained from the three methods are …

Participatory Research Workshop On Seasonal Prediction Of Hydroclimatic Extremes In The Greater Horn Of Africa, Tsegaye Tadesse, Deborah Bathke, Nicole Wall, Jacob Petr, Tonya Haigh

Drought Mitigation Center: Faculty Publications

Sixty participants, including experts from seven countries from the Greater Horn of Africa (GHA) and project coinvestigators from the United States, met to discuss seasonal prediction of hydroclimatic extremes across the GHA, engage decision-makers in the assessment of information requirements, and use feedback to orient prediction models to address user needs. Perceptions of current climate change impacts in the GHA were assessed using pre- and postworkshop surveys. Participatory research was conducted through small group discussions on water, agriculture, impacts, and data sharing.