Physical Sciences and Mathematics Commons^™

Improvement Of Phylogenetic Method To Analyze Compositional Heterogeneity, Zehua Zhang, Kecheng Guo, Gaofeng Pan, Jijun Tang, Fei Guo

Faculty Publications

Background: Phylogenetic analysis is a key way to understand current research in the biological processes and detect theory in evolution of natural selection. The evolutionary relationship between species is generally reflected in the form of phylogenetic trees. Many methods for constructing phylogenetic trees, are based on the optimization criteria. We extract the biological data via modeling features, and then compare these characteristics to study the biological evolution between species.

Results: Here, we use maximum likelihood and Bayesian inference method to establish phylogenetic trees; multi-chain Markov chain Monte Carlo sampling method can be used to select optimal phylogenetic tree, resolving local …

Fungal Community Homogenization, Shift In Dominant Trophic Guild, And Appearance Of Novel Taxa With Biotic Invasion, Mark A. Anthony, Serita D. Frey, Kristina A. Stinson

Faculty Publications

Invasion by non-native plants may fundamentally restructure the soil fungal community. The invasive plant, Alliaria petiolata, produces secondary compounds suppressive to mycorrhizal fungi and may therefore be expected to have generally negative effects on other components of the fungal community. Here, we compared fungal biomass, diversity, community composition, and the relative abundance of fungal trophic guilds, along with edaphic properties of soils collected from uninvaded and invaded plots across six temperate forests. Invaded plots were differentiated from uninvaded plots by lower variation in fungal community composition (beta diversity) and soil properties, higher fungal richness and community evenness (alpha diversity), and …

Investigating The Student Enrollment Decision At Wku, Alec Brown

Mahurin Honors College Capstone Experience/Thesis Projects

The purpose of this research is to investigate the relationships between the enrollment decision of first-time, first-year students admitted to Western Kentucky University and the amount of financial aid awarded, as well as demographic information. The Division of Enrollment Management provided a SAS dataset containing various information about all WKU students admitted in 2013, 2014, and 2015. Additionally, information about the 2016 class of admitted students was provided. The data has been analyzed in SAS Enterprise Miner. We performed analysis using decision tree modeling and logistic regression modeling. Results of these two procedures indicated the importance of credit hours earned …

Notes On Eryx, Omega, And Ata, Victor Fet

Victor Fet

Observations on several Nabokov’s works (Pale Fire, Lolita) where geographic or zoological names provide sources for puns and hidden parallels.

Upper Limits On Gravitational Waves From Scorpius X-1 From A Model-Based Cross-Correlation Search In Advanced Ligo Data, B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Afrough, B. Agarwal, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, L. Aiello, A. Ain, P. Ajith, B. Allen, G. Allen, A. Allocca, P. A. Altin, A. Amato, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. Antier, S. Appert, Marc Favata, Shaon Ghosh

Department of Physics and Astronomy Faculty Scholarship and Creative Works

We present the results of a semicoherent search for continuous gravitational waves from the low-mass X-ray binary Scorpius X-1, using data from the first Advanced LIGO observing run. The search method uses details of the modeled, parametrized continuous signal to combine coherently data separated by less than a specified coherence time, which can be adjusted to trade off sensitivity against computational cost. A search was conducted over the frequency range 25-2000 Hz, spanning the current observationally constrained range of binary orbital parameters. No significant detection candidates were found, and frequency-dependent upper limits were set using a combination of sensitivity estimates …

Inventory Of Gulf Of Mexico Oceanic Fauna Data Including Species, Weight, And Measurements From R/V Point Sur (Cruises Dp03 And Dp04) May-August, 2016, April Cook, Tracey Sutton

DEEPEND Datasets

This data set includes the biological and environmental data for all of the species collected during the DP03 (May 2016) and DP04 cruises (August 2016). The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled to capture diel …

Comparison Of Adaptive Randomized Trial Designs For Time-To-Event Outcomes That Expand Versus Restrict Enrollment Criteria, To Test Non-Inferiority, Josh Betz, Jon Arni Steingrimsson, Tianchen Qian, Michael Rosenblum

Johns Hopkins University, Dept. of Biostatistics Working Papers

Adaptive enrichment designs involve preplanned rules for modifying patient enrollment criteria based on data accrued in an ongoing trial. These designs may be useful when it is suspected that a subpopulation, e.g., defined by a biomarker or risk score measured at baseline, may benefit more from treatment than the complementary subpopulation. We compare two types of such designs, for the case of two subpopulations that partition the overall population. The first type starts by enrolling the subpopulation where it is suspected the new treatment is most likely to work, and then may expand inclusion criteria if there is early evidence …

Judging The Neonatal Abstinence Syndrome Assessment Tools To Guide Future Tool Development: The Use Of Clinimetrics As Opposed To Psychometrics, Philip M. Westgate, Enrique Gomez-Pomar

Biostatistics Faculty Publications

In the face of the current Neonatal Abstinence Syndrome (NAS) epidemic, there is considerable variability in the assessment and management of infants with NAS. In this manuscript, we particularly focus on NAS assessment, with special attention given to the popular Finnegan Neonatal Abstinence Score (FNAS). A major instigator of the problem of variable practices is that multiple modified versions of the FNAS exist and continue to be proposed, including shortened versions. Furthermore, the validity of such assessment tools has been questioned, and as a result, the need for better tools has been suggested. The ultimate purpose of this manuscript, therefore, …

2017, October - Recommendations To Address The Expansion Of Seawater Intrusion In The Salinas Valley Groundwater Basin

Monterey County Water Resources Agency Water Reports

This report provides a discussion of the current knowledge and related background information surrounding seawater intrusion pathways and potential impacts thereof on the Salinas Valley Groundwater Basin. The report also serves as a body of evidence to catalogue the findings used to support the six recommendations presented. Each recommendation can be implemented on its own or in concert with the others, and the relative importance of each is discussed individually in this report. However, the recommendations are conceptualized as a comprehensive solution that, along with continued operation of projects that have been constructed for the same purpose, have the strongest …

Dietary Inflammatory Index And Colorectal Cancer Risk – A Meta-Analysis, Nitin Shivappa, Justyna Godos, James R. Hébert, Michael David Wirth, Gabriele Piuri, Attilio Speciani, Giuseppe Grosso

Faculty Publications

Diet and chronic inflammation of the colon have been suggested to be risk factors in the development of colorectal cancer (CRC). The possible link between inflammatory potential of diet, measured through the Dietary Inflammatory Index (DII®), and CRC has been investigated in several populations across the world. The aim of this study was to conduct a meta-analysis on studies exploring this association. Data from nine studies were eligible, of which five were case-control and four were cohort studies. Results from meta-analysis showed a positive association between increasing DII scores, indicating a pro-inflammatory diet, and CRC. Individuals in the highest versus …

Rehabilitation Of An Injured Golden Eagle (Aquila Chrysaetos): A Case Study, Fida Muhammad Khan, Fakhar-I- Abbas, Abu Ul Hassan Faiz

Journal of Bioresource Management

Habitat destruction and anthropogenic activities cause wild birds to migrate towards urban areas in search of food and sometimes nesting in high-roof buildings, where they are caught by local people using different techniques and are further used for hunting or recreational purposes. An injured Golden Eagle (Aquila chrysaetos) was found entangled in bushes near the vicinity of Balkasar Research Complex, Chakwal, Pakistan. After complete physical examination, a wound on the right wing and closed leg fracture was diagnosed. The successful treatment was done by anti-parasitic and anti-bacterial drugs with careful monitoring. Splint was adjusted after aligning the fractured …

“Wrong” Side Interpolation By Positive Real Rational Functions, Daniel Alpay, Izchak Lewkowicz

Mathematics, Physics, and Computer Science Faculty Articles and Research

Using polynomial interpolation, along with structural properties of the family of rational positive real functions, we here show that a set of m nodes in the open left half of the complex plane, can always be mapped to anywhere in the complex plane by rational positive real functions whose degree is at most m. Moreover we introduce an easy-to-find parametrization in R2m+3 of a large subset of these interpolating functions.

Upper Limits On Gravitational Waves From Scorpius X-1 From A Model-Based Cross-Correlation Search In Advanced Ligo Data, B. P. Abbott, K. Aultoneal, S. Gaudio, K. Gill, B. Hughey, J. W. W. Pratt, E. Schmidt, S. G. Schwalbe, M. J. Szczepańczyk, M. Zanolin, Et Al.

Publications

We present the results of a semicoherent search for continuous gravitational waves from the low-mass X-ray binary Scorpius X-1, using data from the first Advanced LIGO observing run. The search method uses details of the modeled, parametrized continuous signal to combine coherently data separated by less than a specified coherence time, which can be adjusted to trade off sensitivity against computational cost. A search was conducted over the frequency range 25–$2000\,\mathrm{Hz}$, spanning the current observationally constrained range of binary orbital parameters. No significant detection candidates were found, and frequency-dependent upper limits were set using a combination of sensitivity estimates and …

Upper Limits On Gravitational Waves From Scorpius X-1 From A Model-Based Cross-Correlation Search In Advanced Ligo Data, B. P. Abbott, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams, T. Adams, P. Addesso, R. X. Adhikari, V. B. Adya, C. Affeldt, M. Afrough, B. Agarwal, M. Agathos, K. Agatsuma, N. Aggarwal, O. D. Aguiar, L. Aiello, A. Ain, P. Ajith, B. Allen, G. Allen, A. Allocca, P. A. Altin, A. Amato, A. Ananyeva, S. B. Anderson, W. G. Anderson, S. Antier, S. Appert

Physics and Astronomy Faculty Publications and Presentations

We present the results of a semicoherent search for continuous gravitational waves from the low-mass X-ray binary Scorpius X-1, using data from the first Advanced LIGO observing run. The search method uses details of the modeled, parametrized continuous signal to combine coherently data separated by less than a specified coherence time, which can be adjusted to trade off sensitivity against computational cost. A search was conducted over the frequency range 25-2000 Hz, spanning the current observationally constrained range of binary orbital parameters. No significant detection candidates were found, and frequency-dependent upper limits were set using a combination of sensitivity estimates …

Using The Oxford Nanopore Minion (A Portable Dna Sequencer) For Microbial Ecology, Lee Kerkhof

Sustainability Seminar Series

An approach utilizing the MinIon to sequence bacterial ribosomal operons within natural samples has been developed. Bacterial rRNA operons were amplified from 6 samples employing a mixture of farm soil and bioreactor DNA in known concentrations. Replicate extraction/amplifications (n=4) yielded over 10,000 2D sequences which were analyzed using a simplified data analysis pipeline based on NCBI Blast and assembly with Geneious software. The method could detect over 1000 operational taxonomic units in a quantitative manner. An iterative assembly scheme was developed to re- construct those rRNA operons with > 30x coverage from 30 OTUs among the Proteobacteria, Actinobacteria, Acidobacteria, Firmicutes, and …

Categorical Models For Equivariant Classifying Spaces, Bertrand J. Guillou, J. Peter May, Mona Merling

Mathematics Faculty Publications

Starting categorically, we give simple and precise models for classifying spaces of equivariant principal bundles. We need these models for work in progress in equi- variant infinite loop space theory and equivariant algebraic K–theory, but the models are of independent interest in equivariant bundle theory and especially equivariant covering space theory.

Characteristics Of Deep Crustal Seismic Anisotropy From A Compilation Of Rock Elasticity Tensors And Their Expression In Receiver Functions, Sarah J. Brownlee, Vera Schulte-Pelkum, Anissha Raju, Kevin Mahan, Cailey Condit, Omero Felipe Orlandini

Environmental Science and Geology Faculty Research Publications

Rocks in the continental crust are long lived and have the potential to record a wide span of tectonic history in rock fabric. Mapping rock fabric in situ at depth requires the application of seismic methods. Below depths of microcrack closure seismic anisotropy presumably reflects the shape and crystallographic preferred orientations influenced by deformation processes. Interpretation of seismic observables relevant for anisotropy requires assumptions on the symmetry and orientation of the bulk elastic tensor. We compare commonly made assumptions against a compilation of 95 bulk elastic tensors from laboratory measurements, including electron backscatter diffraction and ultrasound, on crustal rocks. The …

Am I Who I Say I Am? Unobtrusive Selfrepresentation And Personality Recognition On Facebook, Margeret A. Hall, Simon Caton

Interdisciplinary Informatics Faculty Publications

Across social media platforms users (sub)consciously represent themselves in a way which is appropriate for their intended audience. This has unknown impacts on studies with unobtrusive designs based on digital (social) platforms, and studies of contemporary social phenomena in online settings. A lack of appropriate methods to identify, control for, and mitigate the effects of self-representation, the propensity to express socially responding characteristics or self-censorship in digital settings, hinders the ability of researchers to confidently interpret and generalize their findings. This article proposes applying boosted regression modelling to fill this research gap. A case study of paid Amazon Mechanical Turk …

The Teszler Times, Melissa Clapp

Library Publications

"The Teszler Times" is the faculty newsletter for the Sandor Teszler Library at Wofford College. The fall 2017 issue contains a message from Dean Kevin Reynolds, information about various services including our redesigned website with a special section for services for faculty, and an easy online form to use for submitting course reserves. The newsletter also features announcements for the upcoming banners to be hung outside the library and the new New Books area, now located adjacent to the Writing Center. Finally, statistics from the 2016-2017 school year show interesting facts about how the Sandor Teszler Library is used.

Intercalation Of Si Between Mos2 Layers, Rik Van Bremen, Qirong Yao, Soumya Banerjee, Deniz Cakir, Nuri Oncel, Harold J.W. Zandvliet

Physics Faculty Publications

We report a combined experimental and theoretical study of the growth of sub-monolayer amounts of silicon (Si) on molybdenum disulfide (MoS2). At room temperature and low deposition rates we have found compelling evidence that the deposited Si atoms intercalate between the MoS2 layers. Our evidence relies on several experimental observations: (1) Upon the deposition of Si on pristine MoS2 the morphology of the surface transforms from a smooth surface to a hill-and-valley surface. The lattice constant of the hill-and-valley structure amounts to 3.16 Å, which is exactly the lattice constant of pristine MoS2. (2) The transitions from hills to valleys …

Evolution Of Superoscillations For Schrödinger Equation In A Uniform Magnetic Field, Fabrizio Colombo, Jonathan Gantner, Daniele C. Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

Aharonov-Berry superoscillations are band-limited functions that oscillate faster than their fastest Fourier component. Superoscillations appear in several fields of science and technology, such as Aharonov’s weak measurement in quantum mechanics, in optics, and in signal processing. An important issue is the study of the evolution of superoscillations using the Schrödinger equation when the initial datum is a weak value. Some superoscillatory functions are not square integrable, but they are real analytic functions that can be extended to entire holomorphic functions. This fact leads to the study of the continuity of a class of convolution operators acting on suitable spaces of …

Structural Surface Mapping For Shape Analysis, Muhammad Razib

FIU Electronic Theses and Dissertations

Natural surfaces are usually associated with feature graphs, such as the cortical surface with anatomical atlas structure. Such a feature graph subdivides the whole surface into meaningful sub-regions. Existing brain mapping and registration methods did not integrate anatomical atlas structures. As a result, with existing brain mappings, it is difficult to visualize and compare the atlas structures. And also existing brain registration methods can not guarantee the best possible alignment of the cortical regions which can help computing more accurate shape similarity metrics for neurodegenerative disease analysis, e.g., Alzheimer’s disease (AD) classification. Also, not much attention has been paid to …

Development Of Sensitive Holographic Devices For Physiological Metal Ion Detection, Sabad-E- Gul, Suzanne Martin, John Cassidy, Izabela Naydenova

Conference Papers

The development of selective alkali metal ions sensors in particular is a subject of significant interest. In this respect, the level of blood electrolytes, particularly H+, Na+, K+ and Cl- , is widely used to monitor aberrant physiologies associated with pulmonary emphysema, acute and chronic renal failure, heart failure, diabetes. The sensors reported in this paper are created by holographic recording of surface relief structures in a self-processing photopolymer material. The structures are functionalized by ionophores dibenzo-18-crown-6 (DC) and tetraethyl 4-tert-butylcalix[4]arene (TBC) in plasticised polyvinyl chloride (PVC) matrix. Interrogation of these structures by light allows indirect measurements of chemical analytes’ …

An Evaluation Of The Effects Of Intensity And Duration On Outcomes Across Treatment Domains For Children With Autism Spectrum Disorder, Erik J. Linstead, D. R. Dixon, E. Hong, C. O. Burns, Ryan French, M. N. Novack, D. Granpeesheh

Mathematics, Physics, and Computer Science Faculty Articles and Research

Applied behavior analysis (ABA) is considered an effective treatment for individuals with autism spectrum disorder (ASD), and many researchers have further investigated factors associated with treatment outcomes. However, few studies have focused on whether treatment intensity and duration have differential influences on separate skills. The aim of the current study was to investigate how treatment intensity and duration impact learning across different treatment domains, including academic, adaptive, cognitive, executive function, language, motor, play, and social. Separate multiple linear regression analyses were used to evaluate these relationships. Participants included 1468 children with ASD, ages 18 months to 12 years old, M= …

Creating An Experimental Learning And Research Driven Spacesuit Lab For Erau, Ryan L. Kobrick, Erik Seedhouse

Ryan L. Kobrick

This paper evaluates key functional data parameters that must be considered for suborbital spaceflight participants wearing pressurized suits for intravehicular activity (IVA). Data parameters of an analog spacesuit worn in an analog flight environment were obtained from 40 civilian participants using the Suborbital Space Flight Simulator (SSFS) at Embry-Riddle Aeronautical University (ERAU) while donning Final Frontier Design’s (FFD) fully pressurized third-generation spacesuit as part of their training for Project PoSSUM (the Polar Suborbital Science in the Upper Mesosphere Project). The physiological data collected included: blood pressure, electrocardiograms, heart rate, grip strength, and skin temperature. These parameters were measured using a …

Filtered Subspace Iteration For Selfadjoint Operators, Jay Gopalakrishnan, Luka Grubišić, Jeffrey S. Ovall

Portland Institute for Computational Science Publications

We consider the problem of computing a cluster of eigenvalues (and its associated eigenspace) of a (possibly unbounded) selfadjoint operator in a Hilbert space. A rational function of the operator is constructed such that the eigenspace of interest is its dominant eigenspace, and a subspace iteration procedure is used to approximate this eigenspace. The computed space is then used to obtain approximations of the eigenvalues of interest. An eigenvalue and eigenspace convergence analysis that considers both iteration error and dis- cretization error is provided. A realization of the proposed approach for a model second-order elliptic operator is based on a …

Challenges In Modeling Complexity Of Neglected Tropical Diseases: A Review Of Dynamics Of Visceral Leishmaniasis In Resource Limited Settings, Swati Debroy, Olivia F. Prosper, Austin Mishoe, Anuj Mubayi

Mathematics Faculty Publications

Objectives: Neglected tropical diseases (NTD), account for a large proportion of the global disease burden, and their control faces several challenges including diminishing human and financial resources for those distressed from such diseases. Visceral leishmaniasis (VL), the second-largest parasitic killer (after malaria) and an NTD affects poor populations and causes considerable cost to the affected individuals. Mathematical models can serve as a critical and cost-effective tool for understanding VL dynamics, however, complex array of socio-economic factors affecting its dynamics need to be identified and appropriately incorporated within a dynamical modeling framework. This study reviews literature on vector-borne diseases and collects …

Developing Grounded Goals Through Instant Replay Learning, Lisa Meeden, Douglas S. Blank

Computer Science Faculty Research and Scholarship

This paper describes and tests a developmental architecture that enables a robot to explore its world, to find and remember interesting states, to associate these states with grounded goal representations, and to generate action sequences so that it can re-visit these states of interest. The model is composed of feed-forward neural networks that learn to make predictions at two levels through a dual mechanism of motor babbling for discovering the interesting goal states and instant replay learning for developing the grounded goal representations. We compare the performance of the model with grounded goal representations versus random goal representations, and find …

Trapped Ion Mobility Spectrometry Coupled To Fourier Transform Ion Cyclotron Resonance Mass Spectrometry For The Analysis Of Complex Mixtures., Paolo Benigni

FIU Electronic Theses and Dissertations

Analytical Characterization of complex mixtures, such as crude oil, environmental samples, and biological mixtures, is challenging because of the large diversity of molecular components. Mass spectrometry based techniques are among the most powerful tools for the separation of molecules based on their molecular composition, and the coupling of ion mobility spectrometry has enabled the separation and structural elucidation using the tridimensional structure of the molecule. The present work expands the ability of analytical chemists by furthering the development of IMS-MS instrumentation by coupling Trapped Ion Mobility Spectrometry to Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (TIMS-FT-ICR MS). The TIMS-FT-ICR MS …

Toward Earthquake System Science: Western U.S. Lithospheric Stress/Strain Partitioning Of Mantle Dynamics, Anthony Lowry

Funded Research Records

No abstract provided.