Physical Sciences and Mathematics Commons^™

Interannual Snow Accumulation Variability On Glaciers Derived From Repeat, Spatially Extensive Ground-Penetrating Radar Surveys, Daniel Mcgrath, Louis Sass, Shad O'Neel, Chris Mcneil, Salvatore G. Candela, Emily H. Baker, Hans-Peter Marshall

CGISS Publications and Presentations

There is significant uncertainty regarding the spatiotemporal distribution of seasonal snow on glaciers, despite being a fundamental component of glacier mass balance. To address this knowledge gap, we collected repeat, spatially extensive high-frequency ground-penetrating radar (GPR) observations on two glaciers in Alaska during the spring of 5 consecutive years. GPR measurements showed steep snow water equivalent (SWE) elevation gradients at both sites; continental Gulkana Glacier's SWE gradient averaged 115 mm 100 m⁻¹ and maritime Wolverine Glacier's gradient averaged 440 mm 100 m⁻¹ (over > 1000 m). We extrapolated GPR point observations across the glacier surface using terrain parameters derived …

Graphene Used As A Lateral Force Microscopy Calibration Material In The Low-Load Non-Linear Regime, Mathias J. Boland, Jacob L. Hempel, Armin Ansary, Mohsen Nasseri, Douglas R. Strachan

Physics and Astronomy Faculty Publications

A lateral force microscopy (LFM) calibration technique utilizing a random low-profile surface is proposed that is successfully employed in the low-load non-linear frictional regime using a single layer of graphene on a supporting oxide substrate. This calibration at low loads and on low friction surfaces like graphene has the benefit of helping to limit the wear of the LFM tip during the calibration procedure. Moreover, the low-profiles of the calibration surface characteristic of these layered 2D materials, on standard polished oxide substrates, result in a nearly constant frictional, adhesive, and elastic response as the tip slides over the surface, making …

Pymol Plugin To Build Protein Structures Based On Natural Term Overlaps, Noah T. Paravicini

Dartmouth College Undergraduate Theses

This project is a continuation of the Grigoryan Lab's exploration of TERMs. A TERM is a tertiary structural motif, which is a fragment of a protein that includes the secondary, tertiary, and quaternary environments around a certain residue. As displayed in past publications discussing TERMs, they are a useful way of decomposing proteins into smaller components that help in understanding design and prediction of protein structures. The Grigoryan Lab developed a database that keeps track of naturally occurring overlaps between TERMs, which gives a user the information they would need to put these TERMs together into complex structures. These events …

Boron Oxides Under Pressure: Prediction Of The Hardest Oxides, Huafeng Dong, Artem R. Oganov, Vadim V. Brazhkin, Qinggao Wang, Jin Zhang, M. Mahdi Davari Esfahani, Xiang-Feng Zhou, Fugen Wu, Qiang Zhu

Physics & Astronomy Faculty Research

We search for stable compounds of boron and oxygen at pressures from 0 to 500 GPa using the ab initio evolutionary algorithm uspex. Only two stable stoichiometries of boron oxides, namely, B6O and B2O3, are found to be stable, in good agreement with experiment. A hitherto unknown phase of B6O at ambient pressure, Cmcm−B6O, has recently been predicted by us and observed experimentally. For B2O3, we predict three previously unknown stable high-pressure phases—two of these (Cmc21 and P212121) are dynamically and mechanically stable at ambient pressure, and should be quenchable to ambient conditions. Their predicted hardnesses, reaching 33–35 GPa, make …

A New American Electron Ion Collider On The Way: What It Means For Particle Accelerator Science And Duquesne Students, Courtney Boyd

D.U.Quark

No abstract provided.

Tio2-Based Hybrid Nanocomposites Modified By Phosphonate Molecules As Selective Pah Adsorbents, Nadine Bou Orm, Quoc An Trieu, Stephane Daniele

All Works

© 2018 by the authors. A robust sol-gel process was developed for the synthesis of surface-functionalized titania nanocrystallites bearing unsaturated groups starting from molecular heteroleptic single-source precursors. Molecules and nanomaterials were thoroughly characterized by multinuclear liquid and solid-state nuclear magnetic resonance (NMR), infra-red (FT-IR, DRIFT) spectroscopies. Nitrogen adsorption-desorption (BET), thermogravimetric (TG) and elemental analyses demonstrated the reliability and the fine tuning of the surface functionalization in terms of ratio TiO2:ligand. The as-prepared materials were used as nano-adsorbents to remove mixture of 16 polycyclic aromatic hydrocarbon (PAHs) from aqueous solutions. Adsorption kinetic experiments were carried out for 24 h in solutions …

Photospheric Radius Evolution Of Homologous Explosions, Liang-Duan Liu, Bing Zhang, Ling-Jun Wang, Zi-Gao Dai

Physics & Astronomy Faculty Research

Recent wide-field surveys discovered new types of peculiar optical transients that showed diverse behaviors of the evolution of photospheric properties. We develop a general theory of homologous explosions with constant opacity, paying special attention to the evolution of the photospheric radius R ph. We find that regardless of the density distribution profile, R ph always increases early on and decreases at late times. This result does not depend on the radiation and cooling processes inside the ejecta. The general rising/falling behavior of R ph can be used to quickly diagnose whether the source originates from a supernova-like explosion. The shape …

The Causes Of The Red Sequence, The Blue Cloud, The Green Valley, And The Green Mountain, Stephen A. Eales, Maarten Baes, Nathan Bourne, Malcolm Bremer, Michael J.I. Brown, Christopher Clark, David Clements, Pieter De Vis, Simon Driver, Loretta Dunne, Simon Dye, Cristina Furlanetto, Benne W. Holwerda, R. J. Ivison, L. S. Kelvin, Maritza Lara-Lopez, Lerothodi Leeuw, Jon Loveday, Steve Maddox, Michal J. Michalowski, Steven Phillipps, Aaron Robotham, Dan Smith, Matthew Smith, Elisabetta Valiante, Paul Van Der Werf, Angus Wright

Faculty and Staff Scholarship

The galaxies found in optical surveys fall in two distinct regions of a diagram of optical colour versus absolute magnitude: the red sequence and the blue cloud, with the green valley in between. We show that the galaxies found in a submillimetre survey have almost the opposite distribution in this diagram, forming a 'green mountain'. We show that these distinctive distributions follow naturally from a single, continuous, curved Galaxy Sequence in a diagram of specific star formation rate versus stellar mass, without there being the need for a separate star-forming galaxy main sequence and region of passive galaxies. The cause …

Overview Of The Kentucky Geological Survey No. 1 Hanson Aggregates Well, Carter County, Kentucky, J. Richard Bowersox, Stephen F. Greb, David C. Harris

Information Circular--KGS

The Kentucky Geological Survey drilled the No. 1 Hanson Aggregates well in northern Carter County, Ky., to assess the carbon dioxide storage capacity and confining intervals in the Middle Cambrian–Upper Ordovician section in the southern Appalachian Basin, north of the Rome Trough. The well was drilled to a total depth of 4,835 ft, penetrating the Mississippian–Middle Cambrian Paleozoic section and 120 ft of Neoproterozoic Grenville granite gneiss. Steel casing was cemented to the surface at 350 ft and 2,944 ft to isolate the deep wellbore from the near-surface aquifer and provide anchors for pressure-control equipment. Eight cores totaling 453 ft …

A New Look At T Tauri Star Forbidden Lines: Mhd-Driven Winds From The Inner Disk, Min Fang, Ilaria Pascucci, Suzan Edwards, Uma Gorti, Andrea Banzatti, Mario Flock, Patrick Hartigan, Gregory J. Herczeg, Andrea K. Dupree

Astronomy: Faculty Publications

Magnetohydrodynamic (MHD) and photoevaporative winds are thought to play an important role in the evolution and dispersal of planet-forming disks. We report the first high-resolution (∆v ∼ 6 km s−1 ) analysis of [S II] λ4068, [O I] λ5577, and [O I] λ6300 lines from a sample of 48 T Tauri stars. Following Simon et al. (2016), we decompose them into three kinematic components: a high-velocity component (HVC) associated with jets, and a low-velocity narrow (LVC-NC) and broad (LVC-BC) components. We confirm previous findings that many LVCs are blueshifted by more than 1.5 km s−1 thus most likely trace a …

The Relative Effects Of Forest Amount, Forest Configuration, And Urban Matrix Quality On Forest Breeding Birds, Alexandra V. Shoffner, Andrew M. Wilson, Wenwu Tang, Sara A. Gagné

Environmental Studies Faculty Publications

Urbanization modifies landscape structure in three major ways that impact avian diversity in remnant habitat: habitat amount is reduced and habitat configuration and matrix quality are altered. The relative effects of these three components of landscape structure are relatively well-studied in agricultural landscapes, but little is known about the relative effect of urban matrix quality. We addressed this gap by investigating the relative effects of forest amount, forest configuration, and matrix quality, indicated by degree of urbanization and agriculture amount, on the diversity of three guilds of forest birds using data from 13,763 point counts from Pennsylvania, USA. Forest amount …

Inpatient And Outpatient Infection As A Trigger Of Cardiovascular Disease: The Aric Study, Logan Cowan, Pamela L. Lutsey, James S. Pankow, Kunihiro Matsushita, Junichi Ishigami, Kamakshi Lakshminarayan

Department of Biostatistics, Epidemiology, and Environmental Health Sciences Faculty Publications

Background

Acute infections are known cardiovascular disease (CVD) triggers, but little is known regarding how CVD risk varies following inpatient versus outpatient infections. We hypothesized that in‐ and outpatient infections are associated with CVD risk and that the association is stronger for inpatient infections.

Methods and Results

Coronary heart disease (CHD) and ischemic stroke cases were identified and adjudicated in the ARIC (Atherosclerosis Risk in Communities Study). Hospital discharge diagnosis codes and Medicare claims data were used to identify infections diagnosed in in‐ and outpatient settings. A case‐crossover design and conditional logistic regression were used to compare in‐ and outpatient …

Early Life History Response Of Reef Building Coral, Orbicella Faveolata, To Ocean Acidification And Warming, Kelly A. Pitts

HCNSO Student Theses and Dissertations

Ocean warming and acidification pose major threats to coral reef organisms. It is unknown how the early life history stages of Atlantic corals cope with the combined effects of these two global environmental stressors. Here, I investigate how these stressors influence the fertilization success, larval survivorship, and settlement of the threatened Atlantic coral, Orbicella faveolata. Gametes from O. faveolata were subjected to a factorial combination of present and future scenarios of oceanic temperatures (28.5° C and 30° C) and pH (8.2 and 8.0) predicted to occur by 2050. Results indicate that treatment type did not significantly affect fertilization success. …

First-Principles Structural, Mechanical, And Thermodynamic Calculations Of The Negative Thermal Expansion Compound Zr2(Wo4)(Po4)2, Philippe F. Weck, Eunja Kim, Margaret E. Gordon, Jeffrey A. Greathouse, Remi Dingreville, Charles R. Bryan

Physics & Astronomy Faculty Research

The negative thermal expansion (NTE) material Zr2(WO4)(PO4)2 has been investigated for the first time within the framework of the density functional perturbation theory (DFPT). The structural, mechanical, and thermodynamic properties of this material have been predicted using the Perdew, Burke and Ernzerhof for solid (PBEsol) exchange–correlation functional, which showed superior accuracy over standard functionals in previous computational studies of the NTE material α-ZrW2O8. The bulk modulus calculated for Zr2(WO4)(PO4)2 using the Vinet equation of state at room temperature is K0 = 63.6 GPa, which is in close agreement with the experimental estimate of 61.3(8) at T = 296 K. The …

Dormancy In The Amphistegina Gibbosa Holobiont: Ecological And Evolutionary Implications For The Foraminifera, Benjamin J. Ross

USF Tampa Graduate Theses and Dissertations

Dormancy, a state of severely decreased or suspended metabolism, is a widespread survival strategy in nature. In the Foraminifera, one of the most studied groups of marine organisms, its presence had been suggested by circumstantial evidence, but rarely studied directly until recently. Despite the lack of research, stressor-induced dormancy can significantly alter the way in which foraminiferal ecology is understood, especially in marginal environments. In this dissertation, I reviewed the evidence for dormancy in the foraminiferal literature, concluding that evidence for dormancy is widespread across the Phylum. I then explored the role of dormancy in the survival of the diatom-bearing …

Diffusion And Concentration Of Solids In The Dead Zone Of A Protoplanetary Disk, Chao-Chin Yang, Mordecai-Mark Mac Low, Anders Johansen

Physics & Astronomy Faculty Research

The streaming instability is a promising mechanism to drive the formation of planetesimals in protoplanetary disks. To trigger this process, it has been argued that sedimentation of solids onto the mid-plane needs to be efficient, and therefore that a quiescent gaseous environment is required. It is often suggested that dead-zone or disk-wind structure created by non-ideal magnetohydrodynamical (MHD) effects meets this requirement. However, simulations have shown that the mid-plane of a dead zone is not completely quiescent. In order to examine the concentration of solids in such an environment, we use the local-shearing-box approximation to simulate a particlegas system with …

Understanding Group Dynamics Within A Classroom Using Small Group Networks And Epistemological Framing, Katarzyna E. Pomian

College of Science and Health Theses and Dissertations

In this study, we examined interactions within student groups and between groups and instructors. A deeper exploration of group dynamics helps educators to more fully understand student groups and student learning within the classroom. Our data are from a two-week summer program for incoming college freshman that focuses on helping students develop metacognitive and self-assessment tools. With the intention of using Social Network Analysis (SNA), we took the novel approach of creating network graphs from video data as opposed to surveys. However, given the isolated nature of the groups, the quantitative measures of SNA were inappropriate for our small group …

Proton Mass Decomposition From The Qcd Energy Momentum Tensor, Yi-Bo Yang, Jian Liang, Yu-Jiang Bi, Ying Chen, Terrence Draper, Keh-Fei Liu, Zhaofeng Liu

Physics and Astronomy Faculty Publications

We report results on the proton mass decomposition and also on related quark and glue momentum fractions. The results are based on overlap valence fermions on four ensembles of N_f = 2 + 1 domain wall fermion configurations with three lattice spacings and three volumes, and several pion masses including the physical pion mass. With fully nonperturbative renormalization (and universal normalization on both quark and gluon), we find that the quark energy and glue field energy contribute 32(4)(4)% and 36(5)(4)% respectively in the MS¯ (modified minimal substraction) scheme at μ = 2  GeV. A quarter of the trace anomaly …

Sequence Pattern Mining With Variables, James S. Okolica, Gilbert L. Peterson, Robert F. Mills, Michael R. Grimaila

Faculty Publications

Sequence pattern mining (SPM) seeks to find multiple items that commonly occur together in a specific order. One common assumption is that all of the relevant differences between items are captured through creating distinct items, e.g., if color matters then the same item in two different colors would have two items created, one for each color. In some domains, that is unrealistic. This paper makes two contributions. The first extends SPM algorithms to allow item differentiation through attribute variables for domains with large numbers of items, e.g, by having one item with a variable with a color attribute rather than …

Group Theory And Particles, Elizabeth V. Hawkins

Honors College Theses

We begin by a brief overview of the notion of groups and Lie groups. We then explain what group representations are and give their main properties. Finally, we show how group representation form a natural framework to understand the Standard Model of physics.

Big Data And Sensor Network For Construction Material Testing, Yao Shi

Theses and Dissertations

Engineers and contractors need to have a precise understanding of the development progress of concrete strength in the natural environment, which helps to save project time and cost. However, current practice of concrete construction depends on published data, charts and curves from laboratory tests. The data would not show frequently changing environmental conditions in the real world, which can affect concrete quality significantly. The objective of this research is to design a reliable and accurate method to validate test data of the strength developments of concrete specimens in early stages. The approach includes the following tasks: (1) arrange sensors to …

Relating Cyanobacteria And Physicochemical Water-Quality Properties In Willow Creek Lake, Nebraska, 2012–14, David L. Rus, Brent M. Hall, Steven A. Thomas

United States Geological Survey: Water Reports and Publications

Document abstract

Cyanobacteria (also referred to as blue-green algae) are naturally present members of phytoplankton assemblages that may detract from beneficial uses of water because some strains produce cyanotoxins that pose health hazards to people and animals. Cyanobacteria populations observed in Willow Creek Lake during 2012 through 2014 were compared to external nutrient loading from the Willow Creek drainage basin and several other physicochemical properties within the lake, including internal nutrient loading. This report is part of a cooperative study between the United States Geological Survey, the Lower Elkhorn Natural Resources District, the Nebraska Department of Environmental Quality, the Nebraska …

Markov Chains And Generalized Wavelet Multiresolutions, Myung-Sin Song, Palle Jorgensen

SIUE Faculty Research, Scholarship, and Creative Activity

We develop some new results for a general class of transfer operators, as they are used in a construction of multi-resolutions. We then proceed to give explicit and concrete applications. We further discuss the need for such a constructive harmonic analysis/dynamical systems approach to fractals.

Regeneration Of Aged Dmf For Use In Solid-Phase Peptide Synthesis, Jordan K. Magtaan, Marc Devocelle, Fintan Kelleher

Articles

DMF, which is still the most commonly used solvent for Fmoc-SPPS, has the potential for degradation over time on exposure to air (and water vapour) and storage, to give dimethylamine and formic acid impurities. In particular, dimethylamine can lead to unwanted deprotection of the Fmoc group during for example the initial loading of Fmoc amino acids in SPPS, which leads reduced calculated loading values. We have found that treatment of such aged DMF by simple sparging with an inert gas (N₂), or vacuum sonication, can regenerate the DMF in order to restore loading levels back to those found …

Impacts Of Pacific Ssts On Atmospheric Circulations Leading To California Winter Precipitation Variability: A Diagnostic Modeling, Boksoon Myoung, Sang-Wook Yeh, Jinwon Kim, Menas Kafatos

Mathematics, Physics, and Computer Science Faculty Articles and Research

One of the primary meteorological causes of the winter precipitation deficits and droughts in California (CA) is anomalous developments and maintenance of upper-tropospheric ridges over the northeastern Pacific. In order to understand and find the key factors controlling the winter precipitation variability in CA, the present study examines two dominant atmospheric modes of the 500 hPa geopotential height in the Northern Hemisphere using an Empirical Orthogonal Function (EOF) and their associated large-scale circulation patterns for the last 41 winters (1974/75–2014/15). Explaining 17.5% of variability, the second mode (EOF2) shows strong anti-cyclonic circulations in the North Pacific and cyclonic circulations in …

Tim_Rinn_Final_Disertation.Pdf, Timothy T. Rinn

Timothy Rinn

No abstract provided.

Effective Magnetic And Electric Response Of Composite Materials, Mona Hassan Alsaleh

Doctoral Dissertations

Metamaterials (MMs) are nanocomposite materials consisting of metal-dielectric resonators much smaller in size than the wavelength of the incident light. Common examples of metamaterials are based on split ring resonators (SRRs), parallel wires or strips and fishnet structures. These types of materials are designed and fabricated in order to provide unique optical responses to the incident electromagnetic radiation that are not available in naturally existing materials. The MMs can exhibit unusual properties such as strong magnetism at terahertz (THz) and optical frequencies. Additionally, negative index materials (NIMs) can provide negative index of refraction which can be used in many applications …

Multidimensional Feature Engineering For Post-Translational Modification Prediction Problems, Norman Mapes Jr.

Doctoral Dissertations

Protein sequence data has been produced at an astounding speed. This creates an opportunity to characterize these proteins for the treatment of illness. A crucial characterization of proteins is their post translational modifications (PTM). There are 20 amino acids coded by DNA after coding (translation) nearly every protein is modified at an amino acid level. We focus on three specific PTMs. First is the bonding formed between two cysteine amino acids, thus introducing a loop to the straight chain of a protein. Second, we predict which cysteines can generally be modified (oxidized). Finally, we predict which lysine amino acids are …

Electromagnetic Wave-Matter Interactions In Complex Opto-Electronic Materials And Devices, Raj Kumar Vinnakota

Doctoral Dissertations

This dissertation explores the fundamentals of light-matter interaction towards applications in the field of Opto-electronic and plasmonic devices. In its core, this dissertation attempts and succeeds in the the modeling of light-matter interactions, which is of high importance for better understanding the rich physics underlying the dynamics of electromagnetic field interactions with charged particles. Here, we have developed a self-consistent multi-physics model of electromagnetism, semiconductor physics and thermal effects which can be readily applied to the field of plasmotronics and Selective Laser Melting (SLM). Plasmotronics; a sub-field of photonics has experienced a renaissance in recent years by providing a large …

A Time Series Of Water Column Distributions And Sinking Particle Flux Of Pseudo-Nitzschia And Domoic Acid In The Santa Barbara Basin, California, Blaire P. Umhau, Claudia R. Benitez-Nelson, Clarissa R. Anderson, Kelly Mccabe, Christopher Burrell

Faculty Publications

Water column bulk Pseudo-nitzschia abundance and the dissolved and particulate domoic acid (DA) concentrations were measured in the Santa Barbara Basin (SBB), California from 2009–2013 and compared to bulk Pseudo-nitzschia cell abundance and DA concentrations and fluxes in sediment traps moored at 147 m and 509 m. Pseudo-nitzschia abundance throughout the study period was spatially and temporally heterogeneous (L⁻¹ to 3.8 × 10⁶ cells L⁻¹, avg. 2 × 10⁵ ± 5 × 10⁵ cells L⁻¹) and did not correspond with upwelling conditions or the total DA (tDA) concentration, which was also spatially …