Physical Sciences and Mathematics Commons^™

Vertebrate Diversity In The La Amistad International Park Buffer Zone, Guadalupe, Chiriqui, Panamá, Mina Olson

Independent Study Project (ISP) Collection

Forest fragmentation and increasing agricultural land use are posing threats to the diversity of vertebrates in Panama and across the Mesoamerican Biological Corridor. Protected areas are crucial for providing connectivity and maintaining vertebrate populations. For endemic species with small native ranges, these protected areas are critical for their survival due to sensitivity of habitat change. Higher species diversity and occupancy has been reported for both birds and mammals in protected and forested areas. This pilot survey of vertebrate species was conducted to determine which species live in a primary forest within the buffer zone of La Amistad International Park near …

Transcriptional Dynamics During Rhodococcus Erythropolis Infection With Phage Wc1, Dana Willner, Sudip Paudel, Andrew D. Halleran, Grace E. Solini, Veronica Gray, Margaret Saha

Arts & Sciences Articles

Background

Belonging to the Actinobacteria phylum, members of the Rhodococcus genus thrive in soil, water, and even intracellularly. While most species are non-pathogenic, several cause respiratory disease in animals and, more rarely, in humans. Over 100 phages that infect Rhodococcus species have been isolated but despite their importance for Rhodococcus ecology and biotechnology applications, little is known regarding the molecular genetic interactions between phage and host during infection. To address this need, we report RNA-Seq analysis of a novel Rhodococcus erythopolis phage, WC1, analyzing both the phage and host transcriptome at various stages throughout the infection process.

Results

By five …

Sovereign Seeds: Analyzing The Sustainability Of Peasant Seeds In The Context Of Climate Change And Rural Exodus In Tunisia, Alice Carlson

Independent Study Project (ISP) Collection

How sustainable are peasant seeds? I answer this question on the basis of three elements: environment, economy, and social justice. Using interviews with farmers from various regions of Tunisia, an interview with an expert on climate change and migration, and an interview with a civil society organization working to promote sustainable agriculture, I found that peasant seeds are a sustainable solution for a suffering agricultural sector. Depleted water sources and drought are bringing to light the problems with water-intensive hybrid seeds, and farmers are losing money. As young men increasingly leave the agricultural sector, women are left behind, finding themselves …

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …

Impacts Of Gas Flaring On Soil Quality In The Ecuadorian Amazon: Measuring Gas Flare Effects On Soils At Comparative Distances In Loma Del Tigre, Orellana, Francesca Lopresti

Independent Study Project (ISP) Collection

Gas flaring, the process of burning off the natural gas excreted during petroleum extraction, has recently been the source of public outcry, citing degraded public and environmental health caused by constant flaring near populated centers. While extensive research has been done on the environmental and health impacts of gas flaring, regionally specific research to the Ecuadorian Amazon is lacking. It is crucial that updated research in this region is produced to inform regulations that have the potential to minimize the physical, environmental, and economic impact of the petroleum industry on nearby, under-resourced, and marginalized communities. While air quality surrounding gas …

Género Y Resiliencia En La Amazonía Peruana: Las Experiencias Y Respuestas De Agricultoras Indígenas Ante El Cambio Climático, Zoe Klausner

Independent Study Project (ISP) Collection

El cambio climático antropogénico está redefiniendo rápidamente las relaciones humano-ambientales, especialmente en la Amazonía peruana, donde más de 66 comunidades indígenas enfrentan mayores sequías y temperaturas, afectando profundamente sus medios de vida. Crucialmente, desde la visión ecofeminista central a esta investigación se subraya que las mujeres indígenas experimentan los impactos del cambio climático más severamente y son a menudo los líderes en el fomento de la resiliencia ambiental. Esta investigación explora cómo las agricultoras indígenas de la Amazonía peruana viven el cambio climático y sus estrategias de adaptación y resiliencia. El trabajo de campo se realizó en la comunidad Ese'Eja …

10 Meters To Disaster: The Challenges Of Premature Application Of Circular Economy Strategies In Jakarta’S Waste Management Structure, Almira Bowo

Independent Study Project (ISP) Collection

Jakarta's complex issue of waste management encompasses a multitude of challenges that include inefficiencies in infrastructure, a lack of public awareness of the consequences of an inadequate waste system, socioeconomic disparities, and a deficiency in intersectoral collaboration. The urgency for holistic and sustainable solutions that prioritize proactive waste collection is underscored by the complexities of these dynamics. This field study paper argues that the attention that is being drawn towards trending waste management innovations, which are reactive strategies, could bring the waste crisis in Jakarta to an even more critical state. The sections will critically examine current waste management efforts …

Anuran Diversity And Abundance Across Two Sites With Varying Levels Of Light Pollution In El Valle De Antón, Coclé, Panamá, Jackson Dray

Independent Study Project (ISP) Collection

The impact of artificial light at night (ALAN) on anuran populations has been a subject of growing concern in ecological research. Anurans are particularly susceptible to the impacts of artificial light due to their nocturnal nature and an extensive exposure throughout various stages of life histories. Exposure to artificial light has been shown to impact the larval development and reproductive behavior of anurans. The impacts on anurans juvenile populations suggest a relationship between light pollution and anuran abundance. This study aimed to investigate the hypothesis that ALAN negatively affects the abundance and diversity of anurans. Field surveys were conducted in …

From Collaboration To Continuity: Exploring Stakeholder Engagement For Sustainable Global Health Partnerships, Annabelle Falconer

Independent Study Project (ISP) Collection

Global health partnerships have been identified as crucial to achieving the Sustainable Development Goals and targets related to health and wellbeing. Specifically, the Global Fund, UNAIDS Joint Programme, and the World Food Programme are examples of some of the relevant partners currently engaged in this work, filling roles in global health financing, governance, and delivery. Current literature has identified that the effective engagement of stakeholders in partnerships can be crucial in effective project implementation and that global health partnerships during the era of the Millennium Development Goals did impact health outcomes. This research aims to investigate the current strategies for …

Assessing The Impact Of Climate Change On Harbor Seals: Haul-Out Patterns In Iceland Using Cmip6 Projections, Colin Lau

Independent Study Project (ISP) Collection

Harbor seals (Phoca vitulina) are known to exhibit a preference for specific environmental and weather conditions when hauling out, particularly during the pupping and molting cycles during summer. Climate change is projected to have a significant impact on the haul-out patterns and site conditions of harbor seals in Iceland, which could further diminish their dwindling population. A comprehensive literature review was conducted to identify and discuss the environmental variables that can affect haul-out probability. Among them, surface wind speed and air temperature are reported to have the biggest influence on harbor seal haul-out numbers between May and August. Climate projections …

The Role Of Geomorphological Context In Vegetative Succession Within The Breiðamerkurjökull Glacial Foreland, Lucas Nerbonne

Independent Study Project (ISP) Collection

As glaciers retreat worldwide at an accelerating pace, understanding primary succession in these newly exposed landscapes becomes increasingly critical. This study examines the initial vegetative colonization patterns in glacial forelands, focusing on the influence of geomorphological formations of resulting plant communities. By analyzing vegetative communities in glaciofluvial and push moraine deposits, this study highlights how the more varied, channelized morphologies of fluvial deposits create potential microclimates better conducive to heterogenous plant colonization than the homogenous terrain of the nearby push moraine. Vegetative coverage, sediment size, and species abundance was collected at 480 sites across 6 different historical glacial extents across …

Investigating Ocean Carbonate System Changes Across Latitudes In The North Atlantic Basin With A Time-Series Mooring System, Anna Trujillo

Independent Study Project (ISP) Collection

The world ocean, specifically the Arctic, serves as one of the greatest mitigators for anthropogenic carbon dioxide release, making the study of high latitude ocean carbonate chemistry an increasingly important topic. While much work has been done concerning the science of acidification and future model projections, analyzing data to detect decadal anthropogenic trends and effects is also highly important. Aiming to add to this data pool, this study investigated the ocean carbonate system at three North Atlantic mooring locations at polar, subtropical, and tropical latitudes from 2013 - 2021. Time series datasets of the pH and pCO₂ of surface water …

Lisbon’S Electric Vehicle (Ev) Fleet: A Cost-Benefit Analysis Of A Mass Adoption Of Evs In Lisbon By 2050, Maya Estrera

Independent Study Project (ISP) Collection

As the impacts of climate change increase, the EU and its member countries are attempting to achieve carbon neutrality by 2050. The adoption of electric vehicles is proving to be a promising solution to achieve this goal, and specifically, reductions in the transport sector emissions. This study analyzes the potential costs and benefits resulting from a mass adoption of electric vehicles in Lisbon by 2050. Through a cost-benefit analysis, this study aims to quantify the major costs and benefits associated with electric vehicles. The results display the potential monetary benefits of a city-wide shift to electric vehicles in addition to …

Mushroom Composition Across An Elevational Gradient During The 2024 Wet Season In Mazumbai Forest Reserve, Tanzania, Christopher Brady

Independent Study Project (ISP) Collection

Mushrooms are key bioindicators that contribute greatly to ecological health, and their diversity is indicative of a healthy ecosystem. However, even with the vital role they play in ecological health, there are few studies which measure the diversity of mushrooms in Mazumbai Forest Reserve (MFR), Tanzania, Africa, and none which focus on diversity along the elevational gradient within the reserve (1300-1900m). This study measures the diversity and equitability of mushrooms growing in six elevational zones within MFR during the rainy season of 2024. A species checklist of mushrooms growing in MFR during the 2024 rainy season was created, tracking the …

Solar Energy Adoption In Unguja, Tanzania: Influence Of Awareness, Socioeconomics, And Technology Knowledge, Maxime Warnery

Independent Study Project (ISP) Collection

This study looked into the effect of information dissemination on the willingness to adopt solar energy on Unguja Island in the Zanzibar Archipelago. Utilizing an information provision survey, I collected data on demographic factors, personal beliefs, and attitudes towards solar energy. The research focused on determining how information provision affects public perceptions and the likelihood of adopting solar technologies. The findings revealed a significant positive correlation between detailed and contextually relevant information and increased acceptance of solar energy solutions. The enhanced intervention was particularly effective in changing beliefs about solar energy's reliability and economic benefits, addressing critical local issues such …

Applications Of Survival Estimation Under Stochastic Order To Cancer: The Three Sample Problem, Sage Vantine

Honors Program Theses and Research Projects

Stochastic ordering of probability distributions holds various practical applications. However, in real-world scenarios, the empirical survival functions extracted from actual data often fail to meet the requirements of stochastic ordering. Consequently, we must devise methods to estimate these distribution curves in order to satisfy the constraint. In practical applications, such as the investigation of the time of death or the progression of diseases like cancer, we frequently observe that patients with one condition are expected to exhibit a higher likelihood of survival at all time points compared to those with a different condition. Nevertheless, when we attempt to fit a …

Normalized Ground State Of A Mixed Dispersion Nonlinear Schrodinger Equation With Combined Power-Type Nonlinearities, Zhouji Ma, Xiaojun Chang, Zhaosheng Feng

School of Mathematical and Statistical Sciences Faculty Publications and Presentations

We study the existence of normalized ground state solutions to a mixed dispersion fourth-order nonlinear Schrodinger equation with combined power-type nonlinearities. By analyzing the subadditivity of the ground state energy with respect to the prescribed mass, we employ a constrained minimization method to establish the existence of ground state that corresponds to a local minimum of the associated functional. Under certain conditions, by studying the monotonicity of ground state energy as the mass varies, we apply the constrained minimization arguments on the Nehari-Pohozaev manifold to prove the existence of normalized ground state solutions.

Multifunctional Nanomaterial Analysis Using Inexpensive Techniques, Casey Jordan , '24

Senior Theses, Projects, and Awards

Designing methods to comprehensively understand nanomaterial interactions is of paramount importance as nanomaterials gain widespread use and their environmental impact becomes a concern. While current characterization methods are suitable for initial assessments, there is a need for comprehensive techniques to evaluate end-of-use scenarios and environmental effects. This report emphasizes the potential of electrochemistry as a versatile measurement tool for nanomaterial analysis. Two projects are presented, showcasing innovative analytical architectures to overcome the limitations of existing techniques. Project 1 integrates linear sweep stripping voltammetry (LSSV) and particle impact voltammetry (PIV) to achieve kinetic resolution and size analysis of silver nanoparticles (AgNPs) …

Differences In The Metabolic Outputs Of Caulobacter Crescentus Modify The Kinetics Of Silver Nanoparticle Dissolution, Tyler M. Hicks , '24

Senior Theses, Projects, and Awards

Silver nanoparticles (AgNPs) are widely used within commercial products due to their distinct antibacterial and antimicrobial properties. As their utilization continues to increase, their inevitable improper disposal could present lasting environmental ramifications due to their nonspecific biotoxicity. One microorganism of interest is Caulobacter crescentus, a common freshwater bacterium found in locations where AgNPs end after their disposal. C. crescentus has two distinct cell types—a stalked and a swarmer form—each with their own unique function and metabolic outputs. Approximately 15% of the C. crescentus metabolome varies with cell cycle, thus making this an interesting and environmentally relevant model organism for …

Thinking Outside The Membrane: Investigating The Structure Of The Influenza A M2 Ectodomain, Kyra Roepke , '24

Senior Theses, Projects, and Awards

Influenza A leads to annual epidemics that result in three-to-five million cases of severe illness each year and occasional devastating pandemics. Some current prevention and treatment methods target the M2 membrane protein on the surface of the virus. However, viral mutability and drug resistance require the targeting of more conserved parts of the protein.

The goal of this thesis was to investigate the secondary structure and dynamics of the M2 ectodomain (M2e), which is highly conserved across influenza viruses and across evolutionary time. The structure of M2e has previously been challenging to study because of its flexibility. In this study, …

Doubly Almost Bipartite Leonard Pairs, Shuichi Masuda

Dissertations and Theses

In Linear algebra, the concept of Leonard pair (LP) was motivated by the theory of Q-polynomial distance-regular graphs. In this dissertation, we will first give a brief introduction to LPs and to two closely-related classes of objects: (i) bipartite Leonard pairs (BLPs) and (ii) almost bipartite Leonard pairs (ABLPs). Taking these as departure points, we will introduce a new class of object - doubly almost bipartite Leonard pairs (DABLPs). The primary aim of our work is to fully classify (up to isomorphism) this new family. In addition, since there is known to be a natural correspondence between Leonard pairs …

Urban Flooding: Legal Tools To Address A Growing Crisis, Michael B. Gerrard

Faculty Scholarship

While sea level rise has long received a great deal of attention, another impact of climate change is now getting greater notice — increases in extreme precipitation. As the atmosphere warms, it can hold more moisture; for every increase of one degree Celsius, seven percent more water vapor is carried in the air. When that moisture is quickly released as intense rainstorms, stormwater systems can be overwhelmed, and cities can suffer devastating floods.

The frequency and intensity of heavy precipitation events have increased since the 1950s over most of the world's land areas. One 2023 study — generally consistent with …

Dynamic Soil-Structure Response And Failure Of Wood Utility Poles Under Hurricane-Force Wind And Non-Linear Cable Loads, Ramani Ayakannu

Civil & Environmental Engineering Theses & Dissertations

This dissertation presents the outcome of a study of the dynamic soil-structure interaction response of tapered wood utility poles embedded in various foundation soils subject to quasi-static and dynamic wind loads. The study includes the effects of nonlinear soil behavior with varying quantities of moisture and nonlinear cable tension loads on a class H1 wood pole. The natural frequency response of the pole is determined using a finite element formulation. The dynamic response in the presence of wind-induced forcing function is studied using a SAP2000 finite element scheme with wind speeds up to 220 mph. The natural frequency of the …

Spectroscopy Of Atmospheres, Randika Dodangodage

Physics Theses & Dissertations

Spectroscopic methods are used to study planetary and stellar atmospheres. The information obtained from spectroscopic studies provides insight into atmospheric compositions and dynamics, which can be used to model and characterize atmospheres and climates. Laboratory-recorded absorption cross-sections are needed to interpret the recorded spectra of planets and stars. High resolution ethane, neopentane, propene, and n-butane spectra have been recorded, and absorption cross-sections have been provided for different temperatures and total pressures with different broadening gases, including hydrogen, helium, and nitrogen. The Atmospheric Chemistry Experiment (ACE) satellite orbits Earth and records spectra through solar occultation limb observations. HOCl is a chlorine …

Development Of One And Two Current Transition Amplitudes With Two Body Final States, Keegan H. Sherman

Physics Theses & Dissertations

One of the biggest challenges facing modern day nuclear physics is understanding the structure of states within the hadronic spectrum of Quantum Chromodynamics (QCD). We have shown this spectrum to be quite rich with hundreds of allowed states; however, if we wish to better grasp the dynamics of QCD, then it is necessary that we start investigating the internal structure of these states. This may be done by probing these states with external currents, but this requires a description of the intersection of QCD with the electroweak sector. This work acts as a stepping stone in this direction. Working to …

Longitudinal Solid Polarized Target For Clas12 And Study Of Spin Structure Of Nucleons, Pushpa Pandey

Physics Theses & Dissertations

A suite of experiments measuring target-spin observables in electron-nucleon scattering (dubbed Run Group C) was conducted at Jefferson Lab’s Hall B in Newport News, VA with a new polarized nuclear target known as ‘APOLLO’ (Ammonia Polarized Longitudinally). This innovative target is engineered to seamlessly integrate with the advanced 12 GeV CEBAF (Continuous Electron Beam Accelerator Facility) accelerator and the Hall B CLAS12 (12 GeV CEBAF Large Acceptance Spectrometer) detector array. The ‘APOLLO’ target harnesses the power of Dynamic Nuclear Polarization (DNP) to achieve longitudinal polarization of solid ammonia, thereby creating a net polarization in both protons (NH₃) and …

Application Of The Fokker-Planck Equation For Quantifying Initial Condition Uncertainty Of Reversible Dynamic Systems, Troy S. Newhart

Mechanical & Aerospace Engineering Theses & Dissertations

Characterizing the behavior of dynamic systems requires the inclusion of initial conditions to propagate behavior forward in time. More realistic representations of system behavior quantify uncertainty about the initial conditions to assess sensitivity, reliability, and other stochastic response parameters. In many engineering applications, the uncertain initial conditions may be unknown given a desired response. This research applies the Fokker-Planck equation to reversible dynamic systems of select multi-dimensional nonlinear differential equations as a means for predicting the uncertainty about initial conditions. An alternating directions implicit numerical scheme is used to numerically solve the Fokker-Planck equation for both forward and reversed equations …

Artificial General Intelligence And The Mind-Body Problem: Exploring The Computability Of Simulated Human Intelligence In Light Of The Immaterial Mind, Caleb Parks

Senior Honors Theses

In this thesis I explore whether achieving artificial general intelligence (AGI) through simulating the human brain is theoretically possible. Because of the scientific community’s predominantly physicalist outlook on the mind-body problem, AGI research may be limited by erroneous foundational presuppositions. Arguments from linguistics and mathematics demonstrate that the human intellect is partially immaterial, opening the door for novel analysis of the mind’s simulability. I categorize mind-body problem philosophies in a manner relevant to computer science based upon state transitions, and determine their ramifications on mind-simulation. Finally, I demonstrate how classical architectures cannot resolve so-called Gödel statements, discuss why this inability …

Evidence Of Seattle Fault Earthquakes From Patterns In Deep-Seated Landslides, Erich Herzig, Alison Duvall, Adam Booth, Ian Stone, Erin Wirth, Sean Lahusen, Joseph Wartman, Alex Grant

Geology Faculty Publications and Presentations

Earthquake‐induced landslides can record information about the seismic shaking that generated them. In this study, we present new mapping, Light Detection and Ranging‐derived roughness dating, and analysis of over 1000 deep‐seated landslides from the Puget Lowlands of Washington, U.S.A., to probe the landscape for past Seattle fault earthquake information. With this new landslide inventory, we observe spatial and temporal evidence of landsliding related to the last major earthquake on the Seattle fault ∼1100 yr before present. We find spatial clusters of landslides that correlate with ground motions from recent 3D kinematic models of Seattle fault earthquakes. We also find temporal …

Robot Proficiency Self-Assessment Using Assumption-Alignment Tracking, Xuan Cao

Theses and Dissertations

A robot is proficient if its performance for its task(s) satisfies a specific standard. While the design of autonomous robots often emphasizes such proficiency, another important attribute of autonomous robot systems is their ability to evaluate their own proficiency. A robot should be able to conduct proficiency self-assessment (PSA), i.e. assess how well it can perform a task before, during, and after it has attempted the task. We propose the assumption-alignment tracking (AAT) method, which provides time-indexed assessments of the veracity of robot generators' assumptions, for designing autonomous robots that can effectively evaluate their own performance. AAT can be considered …