Physical Sciences and Mathematics Commons^™

Development Of Deep Learning Neural Network For Ecological And Medical Images, Shaobo Liu

Dissertations

Deep learning in computer vision and image processing has attracted attentions from various fields including ecology and medical image. Ecologists are interested in finding an effective model structure to classify different species. Tradition deep learning model use a convolutional neural network, such as LeNet, AlexNet, VGG models, residual neural network, and inception models, are first used on classifying bee wing and butterfly datasets. However, insufficient data sample and unbalanced samples in each class have caused a poor accuracy. To make improvement the test accuracy, data augmentation and transfer learning are applied. Recently developed deep learning framework based on mathematical morphology …

Deep Learning On Image Forensics And Anti-Forensics, Zhangyi Shen

Dissertations

Image forensics protect the authenticity and integrity of digital images. On the contrary, as the countermeasures of digital forensics, anti-forensics is applied to expose the vulnerability of forensics tools. Consequently, forensics researchers could develop forensics tools against possible new attacks. This dissertation investigation demonstrates two image forensics methods based on convolutional neural network (CNN) and two image anti-forensics methods based on generative adversarial network (GAN).

Detecting unsharp masking (USM) sharpened image is the first study in this dissertation. A CNN architecture comprises four convolutional layers and a classification module is proposed to discriminate sharpened images and unsharpened images. The results …

Land Cover Image Segmentation Based On Individual Class Binary Segmentation, Sathyanarayanan Somasunder

Theses

Remote sensing techniques have been developed over the past decades to acquire data without being in contact of the target object or data source. Their application on land-cover image segmentation has attracted significant attention in recent years. With the help of satellites, scientists and researchers can collect and store high resolution image data that can be further processed, segmented, and classified. However, these research results have not yet been synthesized to provide coherent guidance on the effect of variant land-cover segmentation processes. In this paper, we present a novel model that augments segmentation using smaller networks to segment individual classes. …

Rm-Net: Rasterizing Markov Signals To Images For Deep Learning, Kajal Gupta

Theses

Statistical machine learning approaches are quite famous for processing Markov signal data. They can model unobserved states and learn certain characteristics particular to a signal with good accuracy. However, with the advent of Deep learning the novice ways of solving a problem has shifted towards this more sophisticated algorithm, which is much better, powerful and more accurate. Specifically, Convolutional Neural Nets (CNN) have shown many promising results on images and videos. Here we illustrate how CNN can be applied to a 1D numeric signal using signal rasterization technique. We start by rasterizing a 1D numeric Markov signal into an image …

Short Term Temperature Forecasting Using Lstms, And Cnn, Darshan Shah

Theses

Weather forecasting is a vital application in present times. We can use the predictions to minimize the weather related loss. Use of machine learning and deep learning algorithms for forecasting, can eliminate or reduce the necessity of big data and high computation dependent process of parameterization. Long Short-Term Memory (LSTM) is a widely used deep learning architecture for time series forecasting. In this paper, we aim to predict one day ahead average temperature using a 2-layer neural network consisting of one layer of LSTM and one layer of 1D convolution. The input is pre-processed using a smoothing technique and output …

Automating Text Encapsulation Using Deep Learning, Anket Sah

Master's Projects

Data is an important aspect in any form be it communication, reviews, news articles, social media data, machine or real-time data. With the emergence of Covid-19, a pandemic seen like no other in recent times, information is being poured in from all directions on the internet. At times it is overwhelming to determine which data to read and follow. Another crucial aspect is separating factual data from distorted data that is being circulated widely. The title or short description of this data can play a key role. Many times, these descriptions can deceive a user with unwanted information. The user …

Federated Learning In Gaze Recognition (Fligr), Arun Gopal Govindaswamy

College of Computing and Digital Media Dissertations

The efficiency and generalizability of a deep learning model is based on the amount and diversity of training data. Although huge amounts of data are being collected, these data are not stored in centralized servers for further data processing. It is often infeasible to collect and share data in centralized servers due to various medical data regulations. This need for diversely distributed data and infeasible storage solutions calls for Federated Learning (FL). FL is a clever way of utilizing privately stored data in model building without the need for data sharing. The idea is to train several different models locally …

Using Machine Learning Methods To Predict The Movement Trajectories Of The Louisiana Black Bear, Daniel Clark, David Shaw, Armando Vela, Shane Weinstock, John Santerre, Joseph D. Clark

SMU Data Science Review

In 1992, the Louisiana black bear (Ursus americanus luteolus) was placed on the U.S. Endangered Species List. This was due to bear populations in Louisiana being small and isolated enough where their populations couldn’t intersect with other populations to grow. Interchange of individuals between subpopulations of bears in Louisiana is critical to maintain genetic diversity and avoid inbreeding effects. Utilizing GPS (Global Positioning System) data gathered from 31 radio-collared bears from 2010 through 2012, this research will investigate how bears traverse the landscape, which has implications for gene exchange. This paper will leverage machine learning tools to improve upon existing …

Cumulative Infiltration And Infiltration Rate Prediction Using Optimized Deep Learning Algorithms: A Study In Western Iran, Mahdi Panahi, Khabat Khosravi, Sajjad Ahmad, Somayeh Panahi, Salim Heddam, Assefa M. Melesse, Ebrahim Omidvar, Chang Wook Lee

Civil and Environmental Engineering and Construction Faculty Research

Study region: Sixteen different sites from two provinces (Lorestan and Illam) in the western part of Iran were considered for the field data measurement of cumulative infiltration, infiltration rate, and other effective variables that affect infiltration process. Study focus: Soil infiltration is recognized as a fundamental process of the hydrologic cycle affecting surface runoff, soil erosion, and groundwater recharge. Hence, accurate prediction of the infiltration process is one of the most important tasks in hydrological science. As direct measurement is difficult and costly, and empirical models are inaccurate, the current study proposed a standalone, and optimized deep learning algorithm of …

The Effects Of Individual Differences, Non‐Stationarity, And The Importance Of Data Partitioning Decisions For Training And Testing Of Eeg Cross‐Participant Models, Alexander J. Kamrud [*], Brett J. Borghetti, Christine M. Schubert Kabban

Faculty Publications

EEG-based deep learning models have trended toward models that are designed to perform classification on any individual (cross-participant models). However, because EEG varies across participants due to non-stationarity and individual differences, certain guidelines must be followed for partitioning data into training, validation, and testing sets, in order for cross-participant models to avoid overestimation of model accuracy. Despite this necessity, the majority of EEG-based cross-participant models have not adopted such guidelines. Furthermore, some data repositories may unwittingly contribute to the problem by providing partitioned test and non-test datasets for reasons such as competition support. In this study, we demonstrate how improper …

Detection Of Health-Related Behaviours Using Head-Mounted Devices, Shengjie Bi

Dartmouth College Ph.D Dissertations

The detection of health-related behaviors is the basis of many mobile-sensing applications for healthcare and can trigger other inquiries or interventions. Wearable sensors have been widely used for mobile sensing due to their ever-decreasing cost, ease of deployment, and ability to provide continuous monitoring. In this dissertation, we develop a generalizable approach to sensing eating-related behavior.

First, we developed Auracle, a wearable earpiece that can automatically detect eating episodes. Using an off-the-shelf contact microphone placed behind the ear, Auracle captures the sound of a person chewing as it passes through the head. This audio data is then processed by a …

Defect Detection In Atomic Resolution Transmission Electron Microscopy Images Using Machine Learning, Philip Cho, Aihua W. Wood, Krishnamurthy Mahalingam, Kurt Eyink

Faculty Publications

Point defects play a fundamental role in the discovery of new materials due to their strong influence on material properties and behavior. At present, imaging techniques based on transmission electron microscopy (TEM) are widely employed for characterizing point defects in materials. However, current methods for defect detection predominantly involve visual inspection of TEM images, which is laborious and poses difficulties in materials where defect related contrast is weak or ambiguous. Recent efforts to develop machine learning methods for the detection of point defects in TEM images have focused on supervised methods that require labeled training data that is generated via …

The Search For Life: Exoplanet Detection With Deep Learning, Natasha Scannell

Theses and Dissertations

The discovery of new exoplanets, planets outside of our solar system, is essential for increasing our understanding of the universe. Exoplanets capable of harboring life are particularly of interest. Over 600 GB of data was collected by the Kepler Space Telescope, and about 30 GB is being collected each day by the Transiting Exoplanet Survey Satellite since its launch in 2018. Traditional methods of experts examining this data manually are no longer tractable; automation is necessary to accomplish the task of vetting all of this data to identify planet candidates from astrophysical false positives.

Previous state-of-the-art models, Astronet and Exonet, …

Deep Learning Methods For Image Restoration And Reconstruction, Zahra Anvari

Computer Science and Engineering Dissertations

The problem of image reconstruction and restoration refers to recovering the clean images from corrupted ones. Corruption or degradation can occur due to atmospheric conditions such as rain, fog, mist, snow, dust, and air pollution or technical drawbacks of imaging devices such as motion blurriness, compression noise, low-resolution, etc. Image reconstruction algorithms aim at reducing these artifacts and degradation and generate clear images. Scenes captured under bad weather conditions such as rain, fog, mist, and haze suffer from visibility issues thus introduce obstacles for computer vision applications, e.g. object detection, recognition, tracking, and segmentation. In this dissertation, we focus on …

Using Deep Learning For Children Brain Image Analysis, Rafael Toche Pizano

Computer Science and Computer Engineering Undergraduate Honors Theses

Analyzing the correlation between brain volumetric/morphometry features and cognition/behavior in children is important in the field of pediatrics as identifying such relationships can help identify children who may be at risk for illnesses. Understanding these relationships can not only help identify children who may be at risk of illnesses, but it can also help evaluate strategies that promote brain development in children. Currently, one way to do this is to use traditional statistical methods such as a correlation analysis, but such an approach does not make it easy to generalize and predict how brain volumetric/morphometry will impact cognition/behavior. One of …

Wound Image Classification Using Deep Convolutional Neural Networks, Behrouz Rostami

Theses and Dissertations

Artificial Intelligence (AI) includes subfields like Machine Learning (ML) and DeepLearning (DL) and discusses intelligent systems that mimic human behaviors. ML has been used in a wide range of fields. Particularly in the healthcare domain, medical images often need to be carefully processed via such operations as classification and segmentation. Unlike traditional ML methods, DL algorithms are based on deep neural networks that are trained on a large amount of labeled data to extract features without human intervention. DL algorithms have become popular and powerful in classifying and segmenting medical images in recent years. In this thesis, we shall study …

A Fully-Automated, Deep Learning-Based Framework For Ct-Based Localization, Segmentation, Verification And Planning Of Metastatic Vertebrae, Tucker Netherton, Tucker James Netherton

Dissertations & Theses (Open Access)

Palliative radiotherapy is an effective treatment for the palliation of symptoms caused by vertebral metastases. Visible evidence of disease is localized on medical images as part of the treatment planning process. However, complicating factors such as time pressures, anatomic variants in the spine, and similarities in adjacent vertebrae are associated with wrong level treatments of the spine. In addition, erroneous manual contouring of anatomic structures is a major failure mode in radiotherapy treatment planning.

The purpose of this study is to mitigate the challenges associated with treatment planning of the spine by automating the treatment planning process for three-dimensional conformal …

Improving Treatment Of Local Liver Ablation Therapy With Deep Learning And Biomechanical Modeling, Brian Anderson, Kristy Brock, Laurence Court, Carlos Eduardo Cardenas, Erik Cressman, Ankit Patel

Dissertations & Theses (Open Access)

In the United States, colorectal cancer is the third most diagnosed cancer, and 60-70% of patients will develop liver metastasis. While surgical liver resection of metastasis is the standard of care for treatment with curative intent, it is only avai lable to about 20% of patients. For patients who are not surgical candidates, local percutaneous ablation therapy (PTA) has been shown to have a similar 5-year overall survival rate. However, PTA can be a challenging procedure, largely due to spatial uncertainties in the localization of the ablation probe, and in measuring the delivered ablation margin.

For this work, we hypothesized …

Unveiling The Mystery Of Api Evolution In Deep Learning Frameworks: A Case Study Of Tensorflow 2, Zejun Zhang, Yanming Yang, Xin Xia, David Lo, Xiaoxue Ren, John C. Grundy

Research Collection School Of Computing and Information Systems

API developers have been working hard to evolve APIs to provide more simple, powerful, and robust API libraries. Although API evolution has been studied for multiple domains, such as Web and Android development, API evolution for deep learning frameworks has not yet been studied. It is not very clear how and why APIs evolve in deep learning frameworks, and yet these are being more and more heavily used in industry. To fill this gap, we conduct a large-scale and in-depth study on the API evolution of Tensorflow 2, which is currently the most popular deep learning framework. We first extract …

Robot: Robustness-Oriented Testing For Deep Learning Systems, Jingyi Wang, Jialuo Chen, Youcheng Sun, Xingjun Ma, Dongxia Wang, Jun Sun, Peng Cheng

Research Collection School Of Computing and Information Systems

Recently, there has been a significant growth of interest in applying software engineering techniques for the quality assurance of deep learning (DL) systems. One popular direction is deep learning testing, where adversarial examples (a.k.a. bugs) of DL systems are found either by fuzzing or guided search with the help of certain testing metrics. However, recent studies have revealed that the commonly used neuron coverage metrics by existing DL testing approaches are not correlated to model robustness. It is also not an effective measurement on the confidence of the model robustness after testing. In this work, we address this gap by …

Low-Dose Ct Image Denoising Using Deep Learning Methods, Zeheng Li

Computer Science and Engineering Theses

Low-dose computed tomography (LDCT) has raised highly attention since the counterpart, full-dose computed tomography (FDCT), brings potential ionizing radiation influence to patients. However, LDCT still suffers from several issues such as relatively higher noise level, which limits its uses in practical applications. To improve LDCT image quality, conventional denoising methods, such as KSVD and BM3D, are first introduced to suppress noise in low-dose images. These methods, however, works under assumptions that are not robust to various data. In this paper, we conduct an extensive research on deep learning based denoising method in LDCT images. We mainly base on Generative-Adversarial Network …

Achieving Hate Speech Detection In A Low Resource Setting, Peiyu Li

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Online social networks provide people with convenient platforms to communicate and share life moments. However, because of the anonymous property of these social media platforms, the cases of online hate speeches are increasing. Hate speech is defined by the Cambridge Dictionary as “public speech that expresses hate or encourages violence towards a person or group based on something such as race, religion, sex, or sexual orientation”. Online hate speech has caused serious negative effects to legitimate users, including mental or emotional stress, reputational damage, and fear for one’s safety. To protect legitimate online users, automatically hate speech detection techniques are …

A Deep Learning-Based Automatic Object Detection Method For Autonomous Driving Ships, Ojonoka Erika Atawodi

Master's Theses

An important feature of an Autonomous Surface Vehicles (ASV) is its capability of automatic object detection to avoid collisions, obstacles and navigate on their own.

Deep learning has made some significant headway in solving fundamental challenges associated with object detection and computer vision. With tremendous demand and advancement in the technologies associated with ASVs, a growing interest in applying deep learning techniques in handling challenges pertaining to autonomous ship driving has substantially increased over the years.

In this thesis, we study, design, and implement an object recognition framework that detects and recognizes objects found in the sea. We first curated …

Artificial Intelligence For Agriculture, University Of Maine Artificial Intelligence Initiative

General University of Maine Publications

UMaine AI draws top talent and leverages a distinctive set of capabilities from the University of Maine and other collaborating institutions from across Maine and beyond, while it also recruits world-class talent from across the nation and the world. It is centered at the University of Maine, leveraging the university’s strengths across disciplines, including computing and information sciences, engineering, health and life sciences, business, education, social sciences, and more.

Deepnec: A Novel Alignment-Free Tool For The Characterization Of Nitrification-Related Enzymes Using Deep Learning, A Step Towards Comprehensive Understanding Of The Nitrogen Cycle, Naveen Duhan

Student Research Symposium

Abstract: Nitrification is an important microbial two-step transformation in the global nitrogen cycle, as it is the only natural process that produces nitrate within a system. The functional annotation of nitrification-related enzymes has a broad range of applications in metagenomics, agriculture, industrial biotechnology, etc. The time and resources needed for determining the function of enzymes experimentally are restrictively costly. Therefore, an accurate genome-scale computational prediction of the nitrification-related enzymes has become much more important.In this study, we developed an alignment-free computational approach to determine the nitrification-related enzymes from the sequence itself. We propose deepNEC, a novel end-to-end feature selection and …

Bibliometric Analysis Of Named Entity Recognition For Chemoinformatics And Biomedical Information Extraction Of Ovarian Cancer, Vijayshri Khedkar, Charlotte Fernandes, Devshi Desai, Mansi R, Gurunath Chavan Dr, Sonali Tidke Dr., M. Karthikeyan Dr.

Library Philosophy and Practice (e-journal)

With the massive amount of data that has been generated in the form of unstructured text documents, Biomedical Named Entity Recognition (BioNER) is becoming increasingly important in the field of biomedical research. Since currently there does not exist any automatic archiving of the obtained results, a lot of this information remains hidden in the textual details and is not easily accessible for further analysis. Hence, text mining methods and natural language processing techniques are used for the extraction of information from such publications.Named entity recognition, is a subtask that comes under information extraction that focuses on finding and categorizing specific …

Deep Learning Based Models For Classification From Natural Language Processing To Computer Vision, Xianshan Qu

Theses and Dissertations

With the availability of large scale data sets, researchers in many different areas such as natural language processing, computer vision, recommender systems have started making use of deep learning models and have achieved great progress in recent years. In this dissertation, we study three important classification problems based on deep learning models.

First, with the fast growth of e-commerce, more people choose to purchase products online and browse reviews before making decisions. It is essential to build a model to identify helpful reviews automatically. Our work is inspired by the observation that a customer's expectation of a review can be …

Detecting The Intent Of Email Using Embeddings, Deep Learning And Transfer Learning, Zaid Alibadi

Theses and Dissertations

Throughout the years' several strategies and tools were proposed and developed to help the users cope with the problem of email overload, but each of these solutions had its own limitations and, in some cases, contribute to further problems. One major theme that encapsulates many of these solutions is automatically classifying emails into predefined categories (ex: Finance, Sport, Promotion, etc.) then move/tag the incoming email to that particular category. In general, these solutions have two main limitations: 1) they need to adapt to changing user’s behavior. 2) they require handcrafted features engineering which in turn need a lot of time, …

Breaking Neural Reasoning Architectures With Metamorphic Relation-Based Adversarial Examples, Alvin Chan, Lei Ma, Felix Juefei-Xu, Yew-Soon Ong, Xiaofei Xie, Minhui Xue, Yang Liu

Research Collection School Of Computing and Information Systems

The ability to read, reason, and infer lies at the heart of neural reasoning architectures. After all, the ability to perform logical reasoning over language remains a coveted goal of Artificial Intelligence. To this end, models such as the Turing-complete differentiable neural computer (DNC) boast of real logical reasoning capabilities, along with the ability to reason beyond simple surface-level matching. In this brief, we propose the first probe into DNC's logical reasoning capabilities with a focus on text-based question answering (QA). More concretely, we propose a conceptually simple but effective adversarial attack based on metamorphic relations. Our proposed adversarial attack …

Automatic Detection Of Vehicles In Satellite Images For Economic Monitoring, Cole Hill

USF Tampa Graduate Theses and Dissertations

With the growing supply of satellites capturing images of the planet, governments andinvestors are looking for ways in which these new images may be used to determine which businesses are struggling and thriving. Recent works have shown that parking lot fill rates can provide valuable information about businesses’ earnings, however, the task of manually annotating the number of vehicles in a parking lot is expensive and time-consuming. Systems which can automate this process are therefore valuable as they are faster and cheaper than human labor. In this thesis, the problem of detection of small objects in large low-resolution images is …