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Full-Text Articles in Physical Sciences and Mathematics

Variational Autoencoders And Wasserstein Generative Adversarial Networks For Improving The Anti-Money Laundering Process, Zhiyuan Chen, Waleed Soliman, Amril Nazir, Mohammad Shorfuzzaman Jan 2021

Variational Autoencoders And Wasserstein Generative Adversarial Networks For Improving The Anti-Money Laundering Process, Zhiyuan Chen, Waleed Soliman, Amril Nazir, Mohammad Shorfuzzaman

All Works

There has been much recent work on fraud and Anti Money Laundering (AML) detection using machine learning techniques. However, most algorithms are based on supervised techniques. Studies show that supervised techniques often have the limitation of not adapting well to new irregular fraud patterns when the dataset is highly imbalanced. Instead, unsupervised learning can have a better capability to find anomalous and irregular patterns in new transaction. Despite this, unsupervised techniques also have the disadvantage of not being able to give state-of-the-art detection results. We propose a suite of unsupervised and deep learning techniques to implement an anti-money laundering and …


Reliable And Interpretable Machine Learning For Modeling Physical And Cyber Systems, Daniel L. Marino Lizarazo Jan 2021

Reliable And Interpretable Machine Learning For Modeling Physical And Cyber Systems, Daniel L. Marino Lizarazo

Theses and Dissertations

Over the past decade, Machine Learning (ML) research has predominantly focused on building extremely complex models in order to improve predictive performance. The idea was that performance can be improved by adding complexity to the models. This approach proved to be successful in creating models that can approximate highly complex relationships while taking advantage of large datasets. However, this approach led to extremely complex black-box models that lack reliability and are difficult to interpret. By lack of reliability, we specifically refer to the lack of consistent (unpredictable) behavior in situations outside the training data. Lack of interpretability refers to the …


A Hybrid Approach Based On Transfer And Ensemble Learning For Improvingperformances Of Deep Learning Models On Small Datasets, Tunç Gülteki̇n, Aybars Uğur Jan 2021

A Hybrid Approach Based On Transfer And Ensemble Learning For Improvingperformances Of Deep Learning Models On Small Datasets, Tunç Gülteki̇n, Aybars Uğur

Turkish Journal of Electrical Engineering and Computer Sciences

The need for high-volume data is one of the challenging requirements of the deep learning methods, and it makes it harder to apply deep learning algorithms to domains in which the data sources are limited, in other words, small. These domains may vary from medical diagnosis to satellite imaging. The performances of the deep learning methods on small datasets can be improved by the approaches such as data augmentation, ensembling, and transfer learning. In this study, we propose a new approach that utilizes transfer learning and ensemble methods to increase the accuracy rates of convolutional neural networks for classification tasks …


Leukocyte Classification Based On Feature Selection Using Extra Trees Classifier: Atransfer Learning Approach, Diana Baby, Sujitha Juliet Devaraj, Jude Hemanth, Anishin Raj M M Jan 2021

Leukocyte Classification Based On Feature Selection Using Extra Trees Classifier: Atransfer Learning Approach, Diana Baby, Sujitha Juliet Devaraj, Jude Hemanth, Anishin Raj M M

Turkish Journal of Electrical Engineering and Computer Sciences

The criticality of investigating the white blood cell (WBC) count cannot be underestimated, as white blood cells are an important component of the body's defence system. From helping to diagnose hidden infections to insinuating the presence of comorbidities like immunodeficiency, an accurate white blood cell count can contribute significantly to shape a physician?s assessment. The manual process performed by the pathologists for the classification of WBCs is a time consuming and tedious task, which is further disadvantaged by a lack of accuracy. This study concentrates on the automatic detection and classification of WBC without data augmentation into four subtypes such …


Learning Multiview Deep Features From Skeletal Sign Language Videos Forrecognition, Ashraf Ali Shaik, Venkata Durga Prasad Mareedu, Venkata Vijaya Kishore Polurie Jan 2021

Learning Multiview Deep Features From Skeletal Sign Language Videos Forrecognition, Ashraf Ali Shaik, Venkata Durga Prasad Mareedu, Venkata Vijaya Kishore Polurie

Turkish Journal of Electrical Engineering and Computer Sciences

The most challenging objective in machine translation of sign language has been the machine?s inability tolearn interoccluding finger movements during an action process. This work addresses the problem of teaching a deeplearning model to recognize differently oriented skeletal data. The multi-view 2D skeletal sign language video data isobtained using 3D motion-captured system. A total of 9 signer views were used for training the proposed network andthe 6 for testing and validation. In order to obtain multi-view deep features for recognition, we proposed an end-to-endtrainable multistream convolutional neural network (CNN) with late feature fusion. The fused multiview features arethen inputted to …


Brain Tumor Detection From Mri Images With Using Proposed Deep Learningmodel: The Partial Correlation-Based Channel Selection, Atinç Yilmaz Jan 2021

Brain Tumor Detection From Mri Images With Using Proposed Deep Learningmodel: The Partial Correlation-Based Channel Selection, Atinç Yilmaz

Turkish Journal of Electrical Engineering and Computer Sciences

A brain tumor is an abnormal growth of a mass or cell in the brain. Early diagnosis of the tumor significantly increases the chances of successful treatment. Artificial intelligence-based systems can detect the tumor in early stages. In this way, it could be possible to detect a tumor and resolve this problem that may endanger human life early. In the study, the partial correlation-based channel selection formula was presented that allowed the selection of the most prominent feature that differs from the other studies in the literature. Additionally, the multi-channel convolution structure was proposed for the feature network phase of …


Diagnosis Of Paroxysmal Atrial Fibrillation From Thirty-Minute Heart Ratevariability Data Using Convolutional Neural Networks, Murat Sürücü, Yalçin İşler, Resul Kara Jan 2021

Diagnosis Of Paroxysmal Atrial Fibrillation From Thirty-Minute Heart Ratevariability Data Using Convolutional Neural Networks, Murat Sürücü, Yalçin İşler, Resul Kara

Turkish Journal of Electrical Engineering and Computer Sciences

Paroxysmal atrial fibrillation (PAF) is the initial stage of atrial fibrillation, one of the most common arrhythmia types. PAF worsens with time and affects the patient?s life quality negatively. In this study, we aimed to diagnose PAF early, so patients can start taking precautions before this disease gets worse. We used the atrial fibrillation prediction database, an open data from Physionet and constructed our approach using convolutional neural networks. Heart rate variability (HRV) features are calculated from time-domain measures, frequency-domain measures using power spectral density estimations (fast Fourier transform, Lomb-Scargle, and Welch periodogram), time-frequencydomain measures using wavelet transform, and nonlinear …


Smart Scribbles For Image Matting, Yang Xin, Yu Qiao, Shaozhe Chen, Shengfeng He, Baocai Yin, Qiang Zhang, Xiaopeng Wei, Rynson W. H. Lau Jan 2021

Smart Scribbles For Image Matting, Yang Xin, Yu Qiao, Shaozhe Chen, Shengfeng He, Baocai Yin, Qiang Zhang, Xiaopeng Wei, Rynson W. H. Lau

Research Collection School Of Computing and Information Systems

Image matting is an ill-posed problem that usually requires additional user input, such as trimaps or scribbles. Drawing a fine trimap requires a large amount of user effort, while using scribbles can hardly obtain satisfactory alpha mattes for non-professional users. Some recent deep learning-based matting networks rely on large-scale composite datasets for training to improve performance, resulting in the occasional appearance of obvious artifacts when processing natural images. In this article, we explore the intrinsic relationship between user input and alpha mattes and strike a balance between user effort and the quality of alpha mattes. In particular, we propose an …


Image Source Identification Using Convolutional Neural Networks In Iot Environment, Yan Wang, Qindong Sun, Dongzhu Rong, Shancang Li, Li Da Xu Jan 2021

Image Source Identification Using Convolutional Neural Networks In Iot Environment, Yan Wang, Qindong Sun, Dongzhu Rong, Shancang Li, Li Da Xu

Information Technology & Decision Sciences Faculty Publications

Digital image forensics is a key branch of digital forensics that based on forensic analysis of image authenticity and image content. The advances in new techniques, such as smart devices, Internet of Things (IoT), artificial images, and social networks, make forensic image analysis play an increasing role in a wide range of criminal case investigation. This work focuses on image source identification by analysing both the fingerprints of digital devices and images in IoT environment. A new convolutional neural network (CNN) method is proposed to identify the source devices that token an image in social IoT environment. The experimental results …


Evaluating The Performance Of Transformer Architecture Over Attention Architecture On Image Captioning, Deepti Balasubramaniam Jan 2021

Evaluating The Performance Of Transformer Architecture Over Attention Architecture On Image Captioning, Deepti Balasubramaniam

Dissertations

Over the last few decades computer vision and Natural Language processing has shown tremendous improvement in different tasks such as image captioning, video captioning, machine translation etc using deep learning models. However, there were not much researches related to image captioning based on transformers and how it outperforms other models that were implemented for image captioning. In this study will be designing a simple encoder-decoder model, attention model and transformer model for image captioning using Flickr8K dataset where will be discussing about the hyperparameters of the model, type of pre-trained model used and how long the model has been trained. …


Implementing A Neural Network For Supervised Learning With A Random Configuration Of Layers And Nodes, Kane A. Phillips Jan 2021

Implementing A Neural Network For Supervised Learning With A Random Configuration Of Layers And Nodes, Kane A. Phillips

Electronic Theses and Dissertations

Deep learning has a substantial amount of real-life applications, making it an increasingly popular subset of artificial intelligence over the last decade. These applications come to fruition due to the tireless research and implementation of neural networks. This paper goes into detail on the implementation of supervised learning neural networks utilizing MATLAB, with the purpose being to generate a neural network based on specifications given by a user. Such specifications involve how many layers are in the network, and how many nodes are in each layer. The neural network is then trained based on known sample values of a function …


Detection Of Amyotrophic Lateral Sclerosis Disease By Variational Modedecomposition And Convolution Neural Network Methods From Event-Relatedpotential Signals, Fatma Lati̇foğlu, Firat Orhan Bulucu, Rami̇s İleri̇ Jan 2021

Detection Of Amyotrophic Lateral Sclerosis Disease By Variational Modedecomposition And Convolution Neural Network Methods From Event-Relatedpotential Signals, Fatma Lati̇foğlu, Firat Orhan Bulucu, Rami̇s İleri̇

Turkish Journal of Electrical Engineering and Computer Sciences

Amyotrophic lateral sclerosis (ALS), also known as motor neuron disease, is a neurological disease that occurs as a result of damage to the nerves in the brain and restriction of muscle movements. Electroencephalography (EEG) is the most common method used in brain imaging to study neurological disorders. Diagnosis of neurological disorders such as ALS, Parkinson's, attention deficit hyperactivity disorder is important in biomedical studies. In recent years, deep learning (DL) models have been started to be applied in the literature for the diagnosis of these diseases. In this study, event-related potentials (ERPs) were obtained from EEG signals obtained as a …


Converting Optical Videos To Infrared Videos Using Attention Gan And Its Impact On Target Detection And Classification Performance, Mohammad Shahab Uddin, Reshad Hoque, Kazi Aminul Islam, Chiman Kwan, David Gribben, Jiang Li Jan 2021

Converting Optical Videos To Infrared Videos Using Attention Gan And Its Impact On Target Detection And Classification Performance, Mohammad Shahab Uddin, Reshad Hoque, Kazi Aminul Islam, Chiman Kwan, David Gribben, Jiang Li

Electrical & Computer Engineering Faculty Publications

To apply powerful deep-learning-based algorithms for object detection and classification in infrared videos, it is necessary to have more training data in order to build high-performance models. However, in many surveillance applications, one can have a lot more optical videos than infrared videos. This lack of IR video datasets can be mitigated if optical-to-infrared video conversion is possible. In this paper, we present a new approach for converting optical videos to infrared videos using deep learning. The basic idea is to focus on target areas using attention generative adversarial network (attention GAN), which will preserve the fidelity of target areas. …


Deep Fingerprint Matching From Contactless To Contact Fingerprints For Increased Interoperability, Alexander James Wilson Jan 2021

Deep Fingerprint Matching From Contactless To Contact Fingerprints For Increased Interoperability, Alexander James Wilson

Graduate Theses, Dissertations, and Problem Reports

Contactless fingerprint matching is a common form of biometric security today. Most smartphones and associated apps now let users opt into using this form of biometric security. However, it’s difficult to match a finger-photo to a fingerprint because of perspective distortion occurring at the edges of the finger-photo, so direct matching using conventional methods will not be as accurate due to a lack of sufficient matching minutiae points. To address this issue, we propose a deep model, Perspective Distortion Rectification Model (PDRM), to estimate the fingerprint correspondence for finger-photo images in order to recover more minutiae points. Not only do …


Deep-Learning-Based Spraying Area Recognition System Forunmanned-Aerial-Vehicle-Based Sprayers, Shahbaz Khan, Muhammad Tufail, Muhammad Tahir Khan, Zubair Ahmed Khan, Shahzad Anwer Jan 2021

Deep-Learning-Based Spraying Area Recognition System Forunmanned-Aerial-Vehicle-Based Sprayers, Shahbaz Khan, Muhammad Tufail, Muhammad Tahir Khan, Zubair Ahmed Khan, Shahzad Anwer

Turkish Journal of Electrical Engineering and Computer Sciences

Unmanned aerial vehicle (UAV)-based spraying system employing machine learning techniques is a recent advancement in precision agriculture for precise spraying, promoting saving chemicals (pesticide/herbicide), and enhancing their effectiveness. This study aims to develop an efficient deep learning system for UAV-based sprayers, which has the capability to accurately recognize spraying areas. A deep learning system is proposed and developed incorporating a faster region-based convolutional neural network (R-CNN) for the imagery collected. In order to develop a classifier for identifying spraying areas from nonspraying areas, four different agriculture croplands and orchards were considered. All the experiments were performed in agriculture fields through …


A Novel Approach For Intrusion Detection Systems: V-Ids, Kenan İnce Jan 2021

A Novel Approach For Intrusion Detection Systems: V-Ids, Kenan İnce

Turkish Journal of Electrical Engineering and Computer Sciences

An intrusion detection system (IDS) is a security mechanism that detects abnormal activities in a network. An ideal IDS must detect intrusion attempts and maybe categorize them for further research and keep false-positive analysis at a very low level. IDSs are used in the analysis of network traffic data at all sizes. Studies on this subject focused on machine learning techniques. Even though the performance rates are high, it is seen that processes such as data understanding, preprocessing, and consistency tests are time-consuming and laborious. For this reason, the use of deep learning (DL) models that automatically perform the mentioned …


Evolution Of Histopathological Breast Cancer Images Classification Using Stochasticdilated Residual Ghost Model, Ramgopal Kashyap Jan 2021

Evolution Of Histopathological Breast Cancer Images Classification Using Stochasticdilated Residual Ghost Model, Ramgopal Kashyap

Turkish Journal of Electrical Engineering and Computer Sciences

Breast cancer detection is a complex problem to solve, and it is a topic that is still being studied. Deep learning-based models aid medical science by helping to classify benign and malignant cancers and saving lives. Breast cancer histopathological image classification (BreakHis) and breast cancer histopathological annotation and diagnosis (BreCaHAD) datasets are used in the proposed model. The study led to the resolution of four essential issues: 1) Addresses the color divergence issue caused by strain normalization during image generation 2) Data augmentation uses several factors like as flip, rotation, shift, resize, and gamma value in order to overcome overfitting …


Deep Learning Techniques Of Losses In Data Transmitted In Wirelesssensor Networks, Mevlüt Ersoy, Beki̇r Aksoy Jan 2021

Deep Learning Techniques Of Losses In Data Transmitted In Wirelesssensor Networks, Mevlüt Ersoy, Beki̇r Aksoy

Turkish Journal of Electrical Engineering and Computer Sciences

Wireless sensor network (WSN) systems are frequently used today as a result of rapid technological developments. Wireless sensor networks, which form the basis of the Internet of Things (IoT), have a wide range of use in theworld from education to health, and from military applications to home applications. It enables the data obtained fromthe sensors to be transferred between nodes with the help of end-to-end wireless protocols. In parallel with the increasingnumber of nodes in WSN, data tra?ic density also increases. Due to the limitations of the WSN network, lost packetrates also increase with increasing data tra?ic. In this study, …


Ensemble Learning Of Multiview Cnn Models For Survival Time Prediction Of Braintumor Patients Using Multimodal Mri Scans, Abdela Ahmed Mossa, Ulus Çevi̇k Jan 2021

Ensemble Learning Of Multiview Cnn Models For Survival Time Prediction Of Braintumor Patients Using Multimodal Mri Scans, Abdela Ahmed Mossa, Ulus Çevi̇k

Turkish Journal of Electrical Engineering and Computer Sciences

Brain tumors have been one of the most common life-threatening diseases for all mankind. There have beenhuge efforts dedicated to the development of medical imaging techniques and radiomics to diagnose tumor patients quicklyand e?iciently. One of the main aims is to ensure that preoperative overall survival time (OS) prediction is accurate.Recently, deep learning (DL) algorithms, and particularly convolutional neural networks (CNNs) achieved promisingperformances in almost all computer vision fields. CNNs demand large training datasets and high computational costs.However, curating large annotated medical datasets are difficult and resource-intensive. The performances of singlelearners are also unsatisfactory for small datasets. Thus, this study …


Neural Relation Extraction: A Review, Mehmet Aydar, Özge Bozal, Furkan Özbay Jan 2021

Neural Relation Extraction: A Review, Mehmet Aydar, Özge Bozal, Furkan Özbay

Turkish Journal of Electrical Engineering and Computer Sciences

Neural relation extraction discovers semantic relations between entities from unstructured text using deeplearning methods. In this study, we make a clear categorization of the existing relation extraction methods in termsof data expressiveness and data supervision, and present a comprehensive and comparative review. We describe theevaluation methodologies and the datasets used for model assessment. We explicitly state the common challenges inrelation extraction task and point out the potential of the pretrained models to solve them. Accordingly, we investigateadditional research directions and improvement ideas in this field.


Image Forgery Detection Based On Fusion Of Lightweight Deep Learning Models, Amit Doegar, Srinidhi Hiriyannaiah, Siddesh Gaddadevara Matt, Srinivasa Krishnarajanagar Gopaliyengar, Maitreyee Dutta Jan 2021

Image Forgery Detection Based On Fusion Of Lightweight Deep Learning Models, Amit Doegar, Srinidhi Hiriyannaiah, Siddesh Gaddadevara Matt, Srinivasa Krishnarajanagar Gopaliyengar, Maitreyee Dutta

Turkish Journal of Electrical Engineering and Computer Sciences

Image forgery detection is one of the key challenges in various real time applications, social media and online information platforms. The conventional methods of detection based on the traces of image manipulations are limited to the scope of predefined assumptions like hand-crafted features, size and contrast. In this paper, we propose a fusion based decision approach for image forgery detection. The fusion of decision is based on the lightweight deep learning models namely SqueezeNet, MobileNetV2 and ShuffleNet. The fusion decision system is implemented in two phases. First, the pretrained weights of the lightweight deep learning models are used to evaluate …


Visual Object Detection For Autonomous Transport Vehicles In Smart Factories, Nazlican Gengeç, Onur Eker, Hakan Çevi̇kalp, Ahmet Yazici, Hasan Serhan Yavuz Jan 2021

Visual Object Detection For Autonomous Transport Vehicles In Smart Factories, Nazlican Gengeç, Onur Eker, Hakan Çevi̇kalp, Ahmet Yazici, Hasan Serhan Yavuz

Turkish Journal of Electrical Engineering and Computer Sciences

Autonomous transport vehicles (ATVs) are one of the most substantial components of smart factories of Industry 4.0. They are primarily considered to transfer the goods or perform some certain navigation tasks in the factory with self driving. The recent developments on computer vision studies allow the vehicles to visually perceive the environment and the objects in the environment. There are numerous applications especially for smart traffic networks in outdoor environments but there is lack of application and databases for autonomous transport vehicles in indoor industrial environments. There exist some essential safety and direction signs in smart factories and these signs …


Sleep Staging With Deep Structured Neural Net Using Gabor Layer And Dataaugmentation, Ali Erfani Sholeyan, Fereidoun Nowshiravan Rahatabad, Kamal Setaredan Jan 2021

Sleep Staging With Deep Structured Neural Net Using Gabor Layer And Dataaugmentation, Ali Erfani Sholeyan, Fereidoun Nowshiravan Rahatabad, Kamal Setaredan

Turkish Journal of Electrical Engineering and Computer Sciences

Slow wave sleep (SWS) and rapid eye movement (REM) are two of the most important sleep stages that are considered in many studies. Detection of these two sleep stages will help researchers in many applications to detect sleeprelated diseases and disorders and also in many fields of neuroscience studies such as cognitive impairment and memory consolidation. Since manual sleep staging is time-consuming, subjective, and expensive; designing an efficient automatic sleep scoring system will overcome some of these difficulties. Many studies have proposed automatic sleep staging systems with different methods. In recent years, deep learning methods show their potential in different …


Deep Learning For Turkish Makam Music Composition, İsmai̇l Hakki Parlak, Yalçin Çebi̇, Ci̇han Işikhan, Derya Bi̇rant Jan 2021

Deep Learning For Turkish Makam Music Composition, İsmai̇l Hakki Parlak, Yalçin Çebi̇, Ci̇han Işikhan, Derya Bi̇rant

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, we introduce a new deep-learning-based system that can compose structured Turkish makam music (TMM) in the symbolic domain. Presented artificial TMM composer (ATMMC) takes eight initial notes from a human user and completes the rest of the piece. The backbone of the composer system consists of multilayered long short-term memory (LSTM) networks. ATMMC can create pieces in Hicaz and Nihavent makams in Şarkı form, which can be viewed and played with Mus2, a notation software for microtonal music. Statistical analysis shows that pieces composed by ATMMC are approximately 84% similar to training data. ATMMC is an open-source …


Malignant Skin Melanoma Detection Using Image Augmentation By Oversamplingin Nonlinear Lower-Dimensional Embedding Manifold, Olusola Oluwakemi Abayomi-Alli, Robertas Damasevicius, Sanjay Misra, Rytis Maskeliunas, Adebayo Abayomi-Alli Jan 2021

Malignant Skin Melanoma Detection Using Image Augmentation By Oversamplingin Nonlinear Lower-Dimensional Embedding Manifold, Olusola Oluwakemi Abayomi-Alli, Robertas Damasevicius, Sanjay Misra, Rytis Maskeliunas, Adebayo Abayomi-Alli

Turkish Journal of Electrical Engineering and Computer Sciences

The continuous rise in skin cancer cases, especially in malignant melanoma, has resulted in a high mortality rate of the affected patients due to late detection. Some challenges affecting the success of skin cancer detection include small datasets or data scarcity problem, noisy data, imbalanced data, inconsistency in image sizes and resolutions, unavailability of data, reliability of labeled data (ground truth), and imbalance of skin cancer datasets. This study presents a novel data augmentation technique based on covariant Synthetic Minority Oversampling Technique (SMOTE) to address the data scarcity and class imbalance problem. We propose an improved data augmentation model for …


Deep Learning-Based Covid-19 Detection System Using Pulmonary Ct Scans, Rajit Nair, Adi Alhudhaif, Deepika Koundal, Rumi Iqbal Doewes, Preeti Sharma Jan 2021

Deep Learning-Based Covid-19 Detection System Using Pulmonary Ct Scans, Rajit Nair, Adi Alhudhaif, Deepika Koundal, Rumi Iqbal Doewes, Preeti Sharma

Turkish Journal of Electrical Engineering and Computer Sciences

One of the most significant pandemics has been raised in the form of Coronavirus disease 2019 (COVID19). Many researchers have faced various types of challenges for finding the accurate model, which can automatically detect the COVID-19 using computed pulmonary tomography (CT) scans of the chest. This paper has also focused on the same area, and a fully automatic model has been developed, which can predict the COVID-19 using the chest CT scans. The performance of the proposed method has been evaluated by classifying the CT scans of community-acquired pneumonia (CAP) and other non-pneumonia. The proposed deep learning model is based …


Employing Deep Learning Architectures For Image-Based Automatic Cataractdiagnosis, Emrullah Acar, Ömer Türk, Ömer Faruk Ertuğrul, Erdoğan Aldemi̇r Jan 2021

Employing Deep Learning Architectures For Image-Based Automatic Cataractdiagnosis, Emrullah Acar, Ömer Türk, Ömer Faruk Ertuğrul, Erdoğan Aldemi̇r

Turkish Journal of Electrical Engineering and Computer Sciences

Various eye diseases affect the quality of human life severely and ultimately may result in complete vision loss. Ocular diseases manifest themselves through mostly visual indicators in the early or mature stages of the disease by showing abnormalities in optics disc, fovea, or other descriptive anatomical structures of the eye. Cataract is among the most harmful diseases that affects millions of people and the leading cause of public vision impairment. It shows major visual symptoms that can be employed for early detection before the hypermature stage. Automatic diagnosis systems intend to assist ophthalmological experts by mitigating the burden of manual …


Adaptive Physics-Based Non-Rigid Registration For Immersive Image-Guided Neuronavigation Systems, Fotis Drakopoulos, Christos Tsolakis, Angelos Angelopoulos, Yixun Liu, Chengjun Yao, Kyriaki Rafailia Kavazidi, Nikolaos Foroglou, Andrey Fedorov, Sarah Frisken, Ron Kikinis, Alexandra Golby, Nikos Chrisochoides Jan 2021

Adaptive Physics-Based Non-Rigid Registration For Immersive Image-Guided Neuronavigation Systems, Fotis Drakopoulos, Christos Tsolakis, Angelos Angelopoulos, Yixun Liu, Chengjun Yao, Kyriaki Rafailia Kavazidi, Nikolaos Foroglou, Andrey Fedorov, Sarah Frisken, Ron Kikinis, Alexandra Golby, Nikos Chrisochoides

Computer Science Faculty Publications

Objective: In image-guided neurosurgery, co-registered preoperative anatomical, functional, and diffusion tensor imaging can be used to facilitate a safe resection of brain tumors in eloquent areas of the brain. However, the brain deforms during surgery, particularly in the presence of tumor resection. Non-Rigid Registration (NRR) of the preoperative image data can be used to create a registered image that captures the deformation in the intraoperative image while maintaining the quality of the preoperative image. Using clinical data, this paper reports the results of a comparison of the accuracy and performance among several non-rigid registration methods for handling brain deformation. A …


A Tool For Segmentation Of Secondary Structures In 3d Cryo-Em Density Map Components Using Deep Convolutional Neural Networks, Yongcheng Mu, Salim Sazzed, Maytha Alshammari, Jiangwen Sun, Jing He Jan 2021

A Tool For Segmentation Of Secondary Structures In 3d Cryo-Em Density Map Components Using Deep Convolutional Neural Networks, Yongcheng Mu, Salim Sazzed, Maytha Alshammari, Jiangwen Sun, Jing He

Computer Science Faculty Publications

Although cryo-electron microscopy (cryo-EM) has been successfully used to derive atomic structures for many proteins, it is still challenging to derive atomic structures when the resolution of cryo-EM density maps is in the medium resolution range, such as 5–10 Å. Detection of protein secondary structures, such as helices and β-sheets, from cryo-EM density maps provides constraints for deriving atomic structures from such maps. As more deep learning methodologies are being developed for solving various molecular problems, effective tools are needed for users to access them. We have developed an effective software bundle, DeepSSETracer, for the detection of protein secondary structure …


Single And Differential Morph Attack Detection, Baaria Chaudhary Jan 2021

Single And Differential Morph Attack Detection, Baaria Chaudhary

Graduate Theses, Dissertations, and Problem Reports

Face recognition systems operate on the assumption that a person's face serves as the unique link to their identity. In this thesis, we explore the problem of morph attacks, which have become a viable threat to face verification scenarios precisely because of their inherent ability to break this unique link. A morph attack occurs when two people who share similar facial features morph their faces together such that the resulting face image is recognized as either of two contributing individuals. Morphs inherit enough visual features from both individuals that both humans and automatic algorithms confuse them. The contributions of this …