Physical Sciences and Mathematics Commons^™

Batch Culture Models Of The Murine Gut Microbiome & The Impact Of Simple Dormancy On Dormancy-Capable Microorganisms Models, Ana C. Mendez

Mathematics Dissertations

The proposed mathematical biology research utilizes mathematical models to gain insight into biological systems. These systems of ordinary differential equations model diverse topics, ranging from gut microbiomes to harmful algal blooms. A complete stability analysis, supporting phase plane portraits, bifurcation diagrams, and numerical simulations will accompany the models presented. In Chapter 2, the murine gut microbiome is modeled to match laboratory experiments in the literature. In these experiments, mice eat plasmid-carrying “donor” bacteria and naturally carry plasmid-free “resident” bacteria in their gut. The models aim to capture the behavior of plasmids, donor bacteria, and resident bacteria. Chapter 3 explores dormancy …

Weak-Strong Beam-Beam Simulation With Crab Cavity Noises For The Hadron Storage Ring Of The Electron-Ion Collider, Y. Luo, B. Gamage, C. Montag, D. Marx, D. Xu, F. Willeke, H. Huang, H. Lovelace Iii, J. Berg, M. Blaskiewicz, S. Peggs, T. Satogata, V. Ptitsyn, V. Morozov, Y. Hao

Mathematics & Statistics Faculty Publications

The Electron Ion Collider (EIC), to be constructed at Brookhaven National Laboratory, will collide polarized high-energy electron beams with hadron beams, achieving luminosities of up to 1 X 10³⁴cm⁻²s⁻¹ in the center-mass energy range of 20-140 GeV. Crab cavities are employed to compensate for the geometric luminosity loss caused by a large crossing angle of 25 mrad in the interaction region. The phase noise in crab cavities will induce a significant emittance growth for the hadron beams in the Hadron Storage Ring (HSR). Various models have been utilized to study the effects of crab cavity …

A New Method To Determine The Posterior Distribution Of Coefficient Alpha, John Mart V. Delosreyes

Psychology Theses & Dissertations

There is a focus within the behavioral/social sciences on non-physical, psychological constructs (i.e., constructs). These constructs are indirectly measured using measurement instruments that consist of questions that capture the manifestations of these constructs. The indirect nature of measuring constructs results in a need of ensuring that measurement instruments are reliable. The most popular statistic used to estimate reliability is coefficient alpha as it is easy to compute and has properties that make it desirable to use. Coefficient alpha’s popularity has resulted in a wide breadth of research into its qualities. Notably, research about coefficient alpha’s distribution has led to developments …

Cloud-Edge Collaborative Service Architecture For Lvc Training System, Peng Yong, Miao Zhang, Yue Hu

Journal of System Simulation

Abstract: LVC training, an important means of military training, has received great attention from military and M&S experts. As the virtual and physical elements become more abundant and deeply integrated, LVC training systems become increasingly complex. Aiming at physical-virtual connection, information interaction, simulation computation, run-time control, etc., this paper designs a cloud-edge collaborative service architecture for LVC training systems (CESA-LVC) by reference to cyber-physical systems and cloud-edge computing architectures. CESA-LVC standardizes the structures of LVC training systems from several aspects of intelligent real-time interconnection, joint simulation computation, training auxiliary service, training cognitive decision, and dynamic configuration optimization. It provides a …

Verifying Empirical Predictive Modeling Of Societal Vulnerability To Hazardous Events: A Monte Carlo Experimental Approach, Yi Victor Wang, Seung Hee Kim, Menas C. Kafatos

Institute for ECHO Articles and Research

With the emergence of large amounts of historical records on adverse impacts of hazardous events, empirical predictive modeling has been revived as a foundational paradigm for quantifying disaster vulnerability of societal systems. This paradigm models societal vulnerability to hazardous events as a vulnerability curve indicating an expected loss rate of a societal system with respect to a possible spectrum of intensity measure (IM) of an event. Although the empirical predictive models (EPMs) of societal vulnerability are calibrated on historical data, they should not be experimentally tested with data derived from field experiments on any societal system. Alternatively, in this paper, …

Linking Community And Ecosystem Ecology By Developing A Grassland Ecosystem Model (Gemini) With Interactions Between Plant, Herbivore And Soil Microbial Populations, Jean-François Soussana, S. Witzmann, P. Loiseau, S. Fontaine, Pascal Carrère, Catherine Picon-Cochard, F. Louault

IGC Proceedings (1993-2023)

Simulation models may help to understand the functional role of plant and soil biodiversity for C and N cycles and for intake by herbivores in semi-natural grassland ecosystems. Detailed models of grassland ecosystems calculate C, N, water and energy fluxes without accounting for the species dynamics in the plant and soil communities. Schwinning & Parsons (1996) proposed a simple pasture growth model that includes mixed grass and clover components. This model was, however, restricted to 2 plant functional groups and it excluded the dynamics of the soil organic matter. The role of competitive interactions between at least 2 functionally distinct …

Development Of A Model Simulating The Impact Of Management Strategies On Production From Beef Cattle Farming Systems Based On Permanent Pasture, M. Jouven, R. Baumont

IGC Proceedings (1993-2023)

Grazing systems in Europe increasingly have to meet environmental objectives, which influence management strategies. A deterministic model describing farming system dynamics is being developed in order to elucidate interactions between nature-friendly management practices, as for example late (after flowering) hay harvest or moderate stocking rate, and agricultural output.

Enhancing Grasslands Education With Decision Support Tools, Helen G. Daily, J. M. Scott, J. M. Reid

IGC Proceedings (1993-2023)

We have successfully used Decision Support Tools (DST) relevant to the management of grazing enterprises to enhance problem solving skills of undergraduates in Australia. Tools such as GrassGro^tm (Moore et al., 1997) and GrazFeed^tm (Freer et al., 1997) are accessed from a central server by authorised users at many widely dispersed Universities across Australia using remote access to thin-client technology via an Internet portal. This has been supplemented with training for lecturers. Experience in developing appropriate teaching and learning materials and the reliable delivery of simulation software to many clients has enhanced learning outcomes at tertiary …

Systems Simulation Assists Land Capability Estimation In Australia’S Temperate Grasslands, Richard J. Simpson, L. Salmon, P. Graham, A. D. Moore, A. Stefanski, D. J. Marshall, J. R. Donnelly

IGC Proceedings (1993-2023)

Intensification of production in the water-limited grasslands of temperate Australia has increased the need to quantify their sustainable carrying capacity. Empirical rainfall-based rules for estimating stocking rate fail when used in districts with differing weather patterns, or when soil and pasture resources limit the utilisation of rainfall. Grazing systems simulation should help to overcome these problems because local conditions can be taken into account. This study investigated the impact of soil resources on potential stocking rate, profitability and production risk in a local climatic area of the southern tablelands of NSW, Australia.

Comparing Elevator Strategies For A Parking Lot, Naveed Arafat

Major Papers

In this paper, we compare elevator strategies for a parking garage. It is assumed that the parking garage has several floors and there is an elevator which can stop on each floor. We begin by considering 4 strategies detailed in page 23. For each strategy, we loop the program 100 times, and get 100 mean values for wait times. Welch's test confirms highly significant differences among the 4 strategies. Repeating the analysis multiple times we see that the best of the 4 strategies is strategy 2, which places the elevator on floor 2 (the median floor) after use.

Simulation And Analysis Of Self-Assembling Slat-Based Dna Ribbons, Lukas Vaughan, Hunter J. Fleming

Computer Science and Computer Engineering Undergraduate Honors Theses

Though still in its infancy, the design of DNA crisscross slats presents great potential in the algorithmic self-assembly of DNA. The provision for higher levels of cooperativity allows for fewer errors through the natural proofreading of slat placement, leading to more robust assembly. Highly accurate simulations of self-assembling DNA squares have been achieved by following the kinetic Tile Assembly Model. Building on that foundation, this study seeks to calibrate the system parameters of a kinetic simulator for self-assembling DNA slats to match experimental results and to use those ranges of parameters to perform exploratory simulations of systems not yet tested …

The Time-Dependent Ionospheric Model Using A Tec-Driven Servo: An Investigation Of The Capabilities And Limitations, Jenny Rebecca Whiteley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The ionosphere is a region of the atmosphere with a high density of electrons. These electrons affect the behavior of any electromagnetic wave that passes through the ionosphere. Communication and geolocation systems, such as traditional radio and Global Positioning Systems, depend on emitted electromagnetic signals being picked up by a receiver. The presence of the ionosphere affects the behavior of the signal and the quality of the service. Hence, the interactions between electromagnetic waves and the ionosphere provide a major motivation to understand, research, and successfully model and predict the ionosphere and its physical phenomena. This study focused on determining …

Numerical Design And Optimization Of Near-Infrared Band- Pass Filter, Hafiza Syeeda Faiza, Ghazi Aman Nowsherwan, Basem A. Abu Izneid, Muhammad Azhar, Saira Riaz, Syed Sajjad Hussain, Saira Ikram, Mohsin Khan, Shahzad Naseem, Mohammad Kanan, Ibrahim M. Mansour

Applied Mathematics & Information Sciences

Band-pass filters functioning in the near-infrared (IR) range are desired for laser technology, multi-photon fluorescence, and IR imaging applications. In this study, we have designed four band-pass filters in the near Infrared spectrum (900-1200 nm) by vertically stacking different high and low-index materials. The band-pass filters are modelled by Essential Macleod software with different thicknesses. The layer’s thicknesses were optimized in such a way to provide the negligible reflectance and maximum transmission on the front side. All the simulated band-pass filters exhibit high transmittance, but TiO2/Al2O3 and Ta2O5/Al2O3 outperforms other modelled structure in terms of performance due to the better …

Evaluating The Economic And Environmental Sustainability Of Integrated Farming Systems, C. A. Rotz, M. A. Sanderson, M. Wachendorf, F. Taube

IGC Proceedings (1993-2023)

Economic and environmental sustainability has become a major concern for forage-based animal production in Europe, North America and other parts of the world. Development of more sustainable farming systems requires an assimilation of experimental and modelling research. Field research is critical for supporting the development and evaluation of models, and modelling is needed to integrate farm components for predicting the long-term effects and interactions resulting from farm management changes. Experimentally supported simulation provides a tool for evaluating and comparing farming strategies and predicting their effect on the watershed, region and beyond.

A Monte-Carlo Simulation Of Gamma Rays In A Sodium Iodide Detector, Ben Kessler

Physics

Gamma rays principally interact with matter through Compton scattering, photoelectric effect, pair production, and triplet production. The focus of this simulation is to study the theoretical energy spectrum created by gamma rays from a Cesium-137 source, which produces gamma photons with an energy of 0.662 MeV. At this energy level, most interactions are results of Compton scatters and the photoelectric effect. Therefore, this simulation only models those two effects on gamma rays. Using Monte Carlo methods and the Metropolis algorithm to sample the probability distributions of the two effects allowed for the simulation of gamma rays in a Sodium Iodide …

Diffusion-Driven Aggregation Of Particles In Quasi-2d Membranes, Oscar Gullickson Rausis

Physics

Many biological membranes can be modeled as two-dimensional (2D) viscous fluid sheets surrounded by three-dimensional (3D) fluids of different viscosity. Such membranes are dubbed quasi-2D as they exhibit properties of both 2D and 3D fluids. The Saffman length is a parameter that describes the energy exchange between the membrane and bulk fluids and controls the cross-over from 2D to 3D hydrodynamics. We aim to model diffusion-driven aggregation of particles embedded in a quasi-2D membrane. It is known that hydrodynamic interactions between solute particles significantly reduce their aggregation rate in 3D fluids. It is expected that in quasi-2D membranes the reduction …

Hydrodynamic And Physicochemical Interactions Between An Active Janus Particle And An Inactive Particle, Jessica S. Rosenberg

Dissertations, Theses, and Capstone Projects

Active matter is an area of soft matter science in which units consume energy and turn it into autonomous motion. Groups of these units – whether flocks of birds, bacterial colonies, or even collections of synthetically-made active particles – may exhibit complex behavior on large scales. While the large-scale picture is of great importance, so is the microscopic scale. Studying the individual particles that make up active matter will allow us to understand how they move, and whether and under what circumstances their activity can be controlled.

Here we delve into the world of active matter by studying colloidal-sized (100 …

Algorithmic Fidelity And The Use Of Large Language Models In Social Science Research, Christopher Michael Rytting

Theses and Dissertations

In this dissertation, we argue that large language models (LLMs) exhibit a considerable amount of \textit{algorithmic fidelity}, a property where they have modeled ideas, behaviors, and attitudes of the population who generated their training data. This has important implications for social science, as this fidelity theoretically allows for the use of LLMs as effective proxies for human beings in experiments and research. We demonstrate this empirically in various social science domains (political partisanship, demographic surveying, voting behavior, hot-button policy issues, news media, populism, congressional summaries), in various applications (replicating social science survey findings, assisting in coding of text datasets, inferring …

Analyzing And Computing Complete Solution For Dots And Boxes Game, Carl Mcaninch

Graduate Dissertations and Theses

This thesis improves a process that analyzes all the states of a game of Dots and Boxes. We use retrograde analysis and simulations to create a solution that provides significant performance improvements over our previous best solution. Expanding upon a previous 4x4 solution using rotations, reflections, better optimization, and cloud computing to limit the processing time and gather more data efficiently. We compute a file and the number of states associated with each file and process every state starting with a completely filled board. We optimized the data for cloud computing by running simulations to find the most efficient number …

Vanet Applications Under Loss Scenarios & Evolving Wireless Technology, Adil Alsuhaim

All Dissertations

In this work we study the impact of wireless network impairment on the performance of VANET applications such as Cooperative Adaptive Cruise Control (CACC), and other VANET applications that periodically broadcast messages. We also study the future of VANET application in light of the evolution of radio access technologies (RAT) that are used to exchange messages. Previous work in the literature proposed fallback strategies that utilizes on-board sensors to recover in case of wireless network impairment, those methods assume a fixed time headway value, and do not achieve string stability. In this work, we study the string stability of a …

Modeling, Simulation And Control Of Microrobots For The Microfactory., Zhong Yang

Electronic Theses and Dissertations

Future assembly technologies will involve higher levels of automation in order to satisfy increased microscale or nanoscale precision requirements. Traditionally, assembly using a top-down robotic approach has been well-studied and applied to the microelectronics and MEMS industries, but less so in nanotechnology. With the boom of nanotechnology since the 1990s, newly designed products with new materials, coatings, and nanoparticles are gradually entering everyone’s lives, while the industry has grown into a billion-dollar volume worldwide. Traditionally, nanotechnology products are assembled using bottom-up methods, such as self-assembly, rather than top-down robotic assembly. This is due to considerations of volume handling of large …

Uconn Baseball Batting Order Optimization, Gavin Rublewski, Gavin Rublewski

Honors Scholar Theses

Challenging conventional wisdom is at the very core of baseball analytics. Using data and statistical analysis, the sets of rules by which coaches make decisions can be justified, or possibly refuted. One of those sets of rules relates to the construction of a batting order. Through data collection, data adjustment, the construction of a baseball simulator, and the use of a Monte Carlo Simulation, I have assessed thousands of possible batting orders to determine the roster-specific strategies that lead to optimal run production for the 2023 UConn baseball team. This paper details a repeatable process in which basic player statistics …

Self-Consistent Effects Of The Recirculating Plasmapshere On The Development Of Storm Time Dynamics In The Inner Magnetosphere., Christian-Andrew Bagby-Wright

Physics Dissertations

The near Earth space environment is a highly coupled system. The Interplanetary Magnetic Field (IMF) interacts with the magnetosphere in myriad ways depend on the orientation of the IMF to the magnetosphere. The magnetic fields of the magnetosphere and the IMF trap plasma and carry the plasma with it as both magnetic fields evolve over time. This plasma can in turn interact with other plasmas, carried by other field lines, affecting the dynamics of the other population and the magnetic field lines of both populations. The nature, frequency, and importance of interactions between different plasma, or magnetic fields, varies greatly …

A One-Dimensional Analysis Of A Microbial Fuel Cell For Efficient Acetate Removal And Power Density Output, David Rouhani

UNLV Theses, Dissertations, Professional Papers, and Capstones

Microbial fuel cells (MFCs) are electrochemical devices that utilize microorganisms to convert organic matter into electrical energy. MFCs have been discussed to have potential application for sustainable wastewater treatment due to their ability to generate electricity while simultaneously treating contaminated water. To optimize MFC performance, numerical models can be used to understand the complex electrochemical and biological processes occurring in the system. In this study, a numerical model was developed to simulate the performance of MFCs under varying operating conditions and to investigate the performance of a MFC for treating wastewater fuel. More specifically, the MFC was modeled to oxidize …

Dpd Guided Insight On The Formation Process Of Polyethersulfone Membranes By Nonsolvent Induced Phase Separation And The Effects Of Additives, Eric Ledieu

Graduate Theses and Dissertations

Dissipative particle dynamics (DPD), a coarse grain simulation method, was applied to the membrane formation process of non-solvent induced phase separation (NIPS) to gain further insight on the mechanism of certain variables and how they affect the final morphology. NIPS involves two solutions, an organic polymer dissolved in an organic solvent colloquially called the dope and an aqueous coagulation bath, brought into contact with one another. The solvents then mix, causing the polymer to fall out of solution as an asymmetric membrane with a dense surface layer and a more open subsurface layer in response to the decreasing solubility. Polyethersulfone …

Procedural City Generation With Combined Architectures For Real-Time Visualization, Griffin Poyck

All Theses

The work and research of this paper sought to build upon traditional city generation and simulation in creating a tool that both realistically simulates cities and their prominent features and also creates aesthetic and artistically rich cities using assets that combine several contemporary or near contemporary architectural styles. The major city features simulated are the surrounding terrain, road networks, individual buildings, and building placement. The tools used to both create and integrate these features were created in Houdini with Unreal Engine 5 as the intended final destination. This research was influenced by the city, town, and road networking of Ghost …

Analyzing And Computing Complete Solution For Dots And Boxes Game, Carl Mcaninch

Undergraduate Theses and Capstone Projects

This thesis improves a process that analyzes all the states of a game of Dots and Boxes. We use retrograde analysis and simulations to create a solution that provides significant performance improvements over our previous best solution. Expanding upon a previous 4x4 solution using rotations, reflections, better optimization, and cloud computing to limit the processing time and gather more data efficiently. We compute a file and the number of states associated with each file and process every state starting with a completely filled board. We optimized the data for cloud computing by running simulations to find the most efficient number …

Statistical Approach To Quantifying Interceptability Of Interaction Scenarios For Testing Autonomous Surface Vessels, Benjamin E. Hargis, Yiannis E. Papelis

Modeling, Simulation and Visualization Student Capstone Conference

This paper presents a probabilistic approach to quantifying interceptability of an interaction scenario designed to test collision avoidance of autonomous navigation algorithms. Interceptability is one of many measures to determine the complexity or difficulty of an interaction scenario. This approach uses a combined probability model of capability and intent to create a predicted position probability map for the system under test. Then, intercept-ability is quantified by determining the overlap between the system under test probability map and the intruder’s capability model. The approach is general; however, a demonstration is provided using kinematic capability models and an odometry-based intent model.

Enhancing Pedestrian-Autonomous Vehicle Safety In Low Visibility Scenarios: A Comprehensive Simulation Method, Zizheng Yan, Yang Liu, Hong Yang

Modeling, Simulation and Visualization Student Capstone Conference

Self-driving cars raise safety concerns, particularly regarding pedestrian interactions. Current research lacks a systematic understanding of these interactions in diverse scenarios. Autonomous Vehicle (AV) performance can vary due to perception accuracy, algorithm reliability, and environmental dynamics. This study examines AV-pedestrian safety issues, focusing on low visibility conditions, using a co-simulation framework combining virtual reality and an autonomous driving simulator. 40 experiments were conducted, extracting surrogate safety measures (SSMs) from AV and pedestrian trajectories. The results indicate that low visibility can impair AV performance, increasing conflict risks for pedestrians. AV algorithms may require further enhancements and validations for consistent safety performance …

A Simulation Of The Impacts Of Climate Change On Civil Aircraft Takeoff Performance, Thomas D. Pellegrin

Doctoral Dissertations and Master's Theses

Climate change affects the near-surface environmental conditions that prevail at airports worldwide. Among these, air density and headwind speed are major determinants of takeoff performance, and their sensitivity to global warming carries potential operational and economic implications for the commercial air transport industry. Previous archival and prospective research observed a weakening in headwind strength and predicted an increase in near-surface temperatures, respectively, resulting in an increase in takeoff distances and weight restrictions. The main purpose of the present study was to update and generalize the extant prospective research using a more representative sample of worldwide airports, a wider range of …