Physical Sciences and Mathematics Commons^™

The Effects Of Phenological Shifts On The Reproductive Success Of Common Terns (Sterna Hirundo) And Arctic Terns (Sterna Paradisaea) In The Gulf Of Maine, Jamie W. Dinella

Student Publications

Climate change is resulting in ecosystem-wide consequences, including shifts in the geographical distribution of species and the timing of biological events, or phenology. The rapidly warming Gulf of Maine hosts breeding populations of migratory common terns (Sterna hirundo) and Arctic terns (Sterna paradisaea). I used nest check data (2013-2022) and eggshell membrane stable isotope data (2022) from Petit Manan Island in the Gulf of Maine to examine the causes and consequences of variation in phenology in common and Arctic terns. I hypothesized that the timing of an individual’s breeding was impacted by their foraging behavior and that female terns that …

Reflections About The Academy And Its Centennial, Marco Aldi, Woodward S. Bousquet

Virginia Journal of Science

Brief reflective essays from members of the Virginia Academy of Science were solicited as part of the Academy's centennial commemoration in 2023. The essays received demonstrate the many and varied ways in which the Academy has fostered collegiality, encouraged research, supported science education, and shaped the course of science in Virginia during the organization's 100-year history.

Introduction To The Special Centennial Issue, Woodward S. Bousquet, Christopher Osgood

Virginia Journal of Science

This special issue of the Virginia Journal of Science (VJS) is dedicated to the 2023 Centennial of the Virginia Academy of Science (VAS). It includes congratulations from Commonwealth leaders, a proclamation by the Virginia General Assembly Senate, Academy members’ personal reflections, several historical papers and summaries, and portions of the program for the May 25-26, 2023 Annual Meeting in Williamsburg on the William & Mary campus.

What Soil Is Worth: A Cost-Benefit Framework Analysis Of Syntropic Farming, Aubrey Kettley

Independent Study Project (ISP) Collection

Syntropic farming, a type of regenerative agriculture, models its farming system after a forest. This type of farming prioritizes soil health while also providing a varied yield of crops. Because it is a fairly new system globally, little research has been done on the economic impacts of syntropic farming, and therefore the feasibility of scaling up regenerative systems like this. This study aims to analyze the economic feasibility of this system through a literature review and a cost-benefit analysis framework. The results highlight the applicability, environmental advantage and economic feasibility of the system. Based on the presented framework, the short …

Ecological Monitoring Program At Vims Esl: Annual Report 2023, Paige G. Ross, Richard A. Snyder

Reports

An Ecological Monitoring Program (EMP) has been established at the Virginia Institute of Marine Science Eastern Shore Laboratory (VIMS ESL) for the coastal environment near the Wachapreague lab. The goals of the initiative are to 1) provide status and trends information to scientists who study and regulators who manage Virginia’s marine resources, 2) provide a scientific context for short-term research and grant proposals 3) provide pedagogical enrichment for educators to use in their classes, and 4) build capacity in staff expertise and training of interns and students at VIMS ESL.

The program formalizes and standardizes data collection for a long-term …

2024- The Twenty-Eighth Annual Symposium Of Student Scholars

Symposium of Student Scholars Program Books

The full program book from the 28th Annual Symposium of Student Scholars, held on April 17-19, 2024. Includes abstracts from the presentations and posters.

Ecology And Conservation Of Diamondback Terrapins In Virginia, Cypress Ambrose

Undergraduate Honors Theses

The diamondback terrapin (Malaclemys terrapin) is the only turtle species native to North America with specific morphological and physiological adaptations to estuarine environments. Along with many other pressures contributing to population declines, terrapins frequently become trapped and drown as bycatch in crab pots used in the commercial and recreational blue crab (Callinectes sapidus) fishery. A wealth of evidence supports the use of inexpensive bycatch reduction devices (BRDs) that can be attached to the entrances of these traps, which leads to a marked decrease in terrapin bycatch while not reducing crab catch dramatically. Virginia is the only …

Procedures For Rangeland Condition Assessment In The Pilbara And Southern Rangelands 2022, Department Of Primary Industries And Regional Development

Natural resources published reports

To define the procedures used in 2022 by the Department of Primary Industries and Regional Development (DPIRD) to complete rangeland condition assessment (RCA) in the Pilbara and southern rangelands region which has predominantly shrub-based pastures. For the rest of the pastoral estate, DPIRD uses the Procedures for RCA in the Kimberley which has grass pastures.

RCA is the process DPIRD uses to make systematic, lease level assessment of rangeland. Rangeland condition considers both the condition of pastures (as defined in the Pasture condition and management guide for the Pilbara rangelands or Southern rangelands pasture condition and management guides) and soils …

Community Opinions On Environmental Action On Isla Porvenir And Whichub Walla In The Guna Yala Comarca, Sofia Houts

Independent Study Project (ISP) Collection

The Guna Yala Comarca is the autonomous, self-governed territory of the Guna people, one of seven Indigenous groups in Panama. The Comarca is located on Panama’s eastern Caribbean coast and includes 365 coral islands. Forty nine Guna communities and roughly 32,000 individuals live in the territory. The Guna General Congress is the highest authority, and each community has a local congress. As a low-lying coastal region, Guna Yala is especially vulnerable to climate change and is already impacted by sea level rise, biodiversity loss, and changing precipitation patterns. Sub-national, national, and international forms of governance and environmental action are crucial …

Community Knowledge Of Shark Ecology, Abundance, And Species Composition In Wichubwala, Nalunega, And Porvenir Communities In The Guna Yala Comarca, Panamá, Kayley Jane Porter

Independent Study Project (ISP) Collection

Sharks play a critical role in marine ecosystems as apex predators that exert top-down control of lower trophic levels. In recent decades, global shark populations have declined to unprecedented levels, triggering a cascade effect that threatens ecosystem functioning and, therefore, coastal community livelihoods that rely on marine resources for food and income. It is known that shark populations are vulnerable and on the decline due to anthropogenic stressors such as fishing and coastal development, but shark species composition and abundance are difficult to monitor due to the evasive nature of sharks, the often remote and inaccessible location of certain shark …

Assessing The Progress And Effects Of Exotic Plant Invasions In A Sustainably Used Littoral Forest Fragment In Southeastern Madagascar, Grant Gerhardt

Independent Study Project (ISP) Collection

While it is important to conserve Madagascar’s unique natural forest environments and the biodiversity they contain, it is also essential that populations reliant on these ecosystems for their income and survival have access to the resources they provide. Sustainable use forests, designated by the IUCN as category VI protected areas, are the solution to meeting both of these conditions. At the same time, it is often the case that the use of forests invites disturbance, which in turn encourages the introduction and establishment of nonnative or invasive plant species. This study examines the degree to which the intensity of use …

Assessing The Impacts Of Anthropogenic Activities On Coral Reef Health In Ushongo, Tanzania Using Coral Diversity And Parrotfish Abundance As Indicators, Thao Mai

Independent Study Project (ISP) Collection

Coral reefs, covering two-thirds of our oceans, are vital and diverse ecosystems, earning them the nickname of “rainforests of the sea”. Despite occupying only 1% of the ocean’s floor, they support 25% of all marine species, providing shelter, nursery ground and food, all the while also protecting the coast and providing job opportunities for local communities. Considered keystone species, coral reefs are highly sensitive to disturbances caused by pollution, climate change, but also anthropogenic activities such as coastal development, destructive fishing practices and tourism, endangering their existence and the entire marine ecosystem. Parrotfish, a crucial resident of these ecosystems, often …

White-Fronted Capuchins (Cebus Albifrons Aequatorialis) In La Hesperia Cloud Forest Reserve: A Study Of Aggressive Behaviors In Response To Human Presence, Marin Lynch

Independent Study Project (ISP) Collection

The Ecuadorian white-fronted capuchin, Cebus albifrons aequatorialis, is a critically endangered primate species native to Ecuador and northern Peru. Their population consists of only a handful of surviving troops spread out across this region. One surviving population exists in La Hesperia Cloud Forest Reserve in Ecuador. This reserve serves as an education and volunteer site for dozens of international travelers every year. I studied the effect of the presence of humans and the lodging they have constructed. Specifically, I investigated the effect on behavior of the proximity of the troops alpha male to manmade structures in the reserve. I …

Variations In Salinity And Forest Structure Between Marginal And Cloistered Mangrove Forests In Boca Del Drago, Bocas Del Toro, Panama, Mary Elizabeth Hodge

Independent Study Project (ISP) Collection

Mangroves are incredibly important ecosystems that have an outsized impact on their surroundings, providing crucial ecosystem services like carbon sequestration and coastal protection. At the same time, mangroves are some of the most threatened habitats due to their valuable position along tropical coastlines. Globally, mangrove forests are deforested and degraded by aquaculture, tourism developments, urbanization, and overharvesting. Due to high rates of mangrove loss, mangrove deforestation is now illegal in Panama, though this legislation is inconsistent and allows for exceptions, especially in tourism developments. This study aims to probe the impacts of localized coastal developments on a small mangrove forest …

Guna Community Perspectives On Attributes, Changes, And Revitalization Of Nainu Agroecological Practices In Isla Tigre, Guna Yala Comarca, Panama, Neshima Vitale-Penniman

Independent Study Project (ISP) Collection

Indigenous agroecological systems are gaining international recognition for their capacity to conserve biodiversity while promoting food security and sovereignty. Nainu is the ancestral agriculture of the Guna people of eastern Panama, and it is characterized by a successional growing system that imitates the regeneration of the tropical forest in which it is practiced. This research aimed to (a) characterize how nainu is practiced by farmers in Isla Tigre, a community in Guna Yala, (b) characterize how nainu practices have changed over time, and (c) describe how farmers and community members in Isla Tigre are envisioning and actualizing the revitalization of …

Avian Diversity And Abundance Among Agricultural Land, Forested Land, And Their Ecotone In Guadalupe, Cerro Punta, Chiriquí Province, Republic Of Panamá., Stella Rae Kinard

Independent Study Project (ISP) Collection

As the human population increases, finding the balance between modifying land use for resources and protecting areas to preserve species that are threatened by anthropogenic disturbance is an ever growing problem. Guadalupe is a town in the Western Highlands of Panamá that struggles in this balance as its primary income source is agriculture, but it is located on the border of two protected areas, Parque Nacional La Amistad and Parque Nacional Volcán Barú. By understanding the unique ways in which avifauna utilize distinct vegetative landscapes, recommendations can be made for management styles of farms in Guadalupe to implement practices that …

Socioecological Assessment Of Birds In Ngezi-Vumawimbi Nature Forest Reserve, Eli Taub

Independent Study Project (ISP) Collection

Effective management of natural resources requires consideration of the environment through both a physical and a sociological lens. In this study, the birds in Ngezi-Vumawimbi Nature Forest Reserve were examined through both a biological mist-net survey and a socioecological series of interviews with people living in the surrounding villages. The mist-net survey compared the understory species in undisturbed and disturbed area of the forest, as well as analyzing birds caught for biologically meaningful information on subspecies and sexual dimorphism. While the mist-net survey was largely unsuccessful, highlighting the need for alternative bird capture methods in Ngezi, it found a decrease …

The Effect Of Sample Grinding On Color-Based Predictions Of Soil Organic Carbon, Mason Rutgers

Honors Theses

Measurements of soil color are widely accessible and can be used as indirect measures of soil organic carbon (SOC). Sensor-based soil color measurements, frequently used in quantitative studies to predict SOC, often use ground and sieved soil samples for color analysis. However, it is unknown whether the extra steps of drying, crushing, and sieving a sample improve the quantitative relationship between color and SOC. This study was conducted to evaluate color-based predictions of SOC using intact, sieved (<2 mm), and fine-ground soil samples from northwest Oklahoma. Moist soil color was measured using Munsell color charts (MCCs) and a Nix Mini 3™ portable color sensor (PCS). The color of the soil samples was measured before processing, after crushing to pass through a 2-mm sieve, and after mechanical grinding to less than 0.25-mm. Using Munsell value (from the MCC) and CIEL* (from the PCS) as predictor variables, regression analyses were conducted to develop SOC predictive functions for each physical state. The resulting coefficients of determination (R2) and root mean squared errors (RMSE) were used to assess model fits for predicting SOC. Model contrasts were calculated to evaluate significant differences between each predictive model. All models exhibited strong relationships (0.56 < R2 < 0.70, 0.20 < RMSE < 0.25) between soil lightness and predicted SOC. Models built using aggregated samples measured with both MCCs (R2= 0.70, RMSE= 0.20) and the PCS (R2= 0.69, RMSE= 0.21) produced the best results. Models built using intact samples measured using the PCS did perform significantly better on samples dark in color (CIEL* < 30). These results suggest that grinding soil samples does not improve color-based predictions of SOC using MCCs and the PCS.

“It’S A No Brainer”: Ensuring Just Transitions In Iceland’S Fishing Industry, Olivia Bowers

Independent Study Project (ISP) Collection

Iceland’s government intends to achieve carbon neutrality by 2040, aiming to target various economic sectors and industries for increased renewable-energy usage. One of its most important plans revolves renewable-energy usage in the fishing industry, which accounts for almost 12% of the country’s GHG emissions. This study aims to understand the perspectives of different stakeholders concerning renewable energy in the fishing industry, using these opinions and existing literature to provide recommendations for a just, equitable, and achievable energy transition. Additionally, this study particularly focuses on the opinions of actors in Vestmannaeyjar, an island community of 4,300 with an especially vibrant, significant, …

Feasibility Study Of Coral Farming In Southwest Madagascar: In-Situ And Ex-Situ Approaches, Raquel Reis

Independent Study Project (ISP) Collection

The southwest coast of Madagascar is home to hundreds of miles of coral reefs that for decades have been susceptible to intense degradation due to anthropogenic influences on marine environments. For reasons involving economic opportunity, conservation strategies, human health safeguarding and advancements to coral research, coral aquaculture in the Toliara region presents an opportunity to restore quality of life and the environment. Other countries in the west Indian ocean have seen great success in coral aquaculture; however, Madagascar, despite having ideal natural circumstances, has not deeply explored coral aquaculture. This review presents an investigation into the feasibility of coral farming, …

Tools For Biomolecular Modeling And Simulation, Xin Yang

Mathematics Theses and Dissertations

Electrostatic interactions play a pivotal role in understanding biomolecular systems, influencing their structural stability and functional dynamics. The Poisson-Boltzmann (PB) equation, a prevalent implicit solvent model that treats the solvent as a continuum while describes the mobile ions using the Boltzmann distribution, has become a standard tool for detailed investigations into biomolecular electrostatics. There are two primary methodologies: grid-based finite difference or finite element methods and body-fitted boundary element methods. This dissertation focuses on developing fast and accurate PB solvers, leveraging both methodologies, to meet diverse scientific needs and overcome various obstacles in the field.

Vascular Epiphyte Population Dynamics Within Human-Modified Landscapes Of Guadalupe, Cerro Punta, Chiriquí, Panamá, Lucine Tashjian

Independent Study Project (ISP) Collection

Epiphytes are plants that grow on other plants non-parasitically, and globally, epiphytes compose a very large and diverse group. They are especially abundant and species-rich in the tropics- particularly, in tropical montane forest ecosystems. Human population growth in the tropics, however, has resulted in significant declines in forest cover with land being converted largely for agricultural purposes. Studies on epiphytes have traditionally been undertaken in pristine, undisturbed forest ecosystems, yet terrestrial land conversion has increased the need to understand the value of human-modified ecosystems for epiphytic populations and biodiversity conservation. This study sought to understand the relationship between human modification …

Vertebrate Diversity In The La Amistad International Park Buffer Zone, Guadalupe, Chiriqui, Panamá, Mina Olson

Independent Study Project (ISP) Collection

Forest fragmentation and increasing agricultural land use are posing threats to the diversity of vertebrates in Panama and across the Mesoamerican Biological Corridor. Protected areas are crucial for providing connectivity and maintaining vertebrate populations. For endemic species with small native ranges, these protected areas are critical for their survival due to sensitivity of habitat change. Higher species diversity and occupancy has been reported for both birds and mammals in protected and forested areas. This pilot survey of vertebrate species was conducted to determine which species live in a primary forest within the buffer zone of La Amistad International Park near …

Transcriptional Dynamics During Rhodococcus Erythropolis Infection With Phage Wc1, Dana Willner, Sudip Paudel, Andrew D. Halleran, Grace E. Solini, Veronica Gray, Margaret Saha

Arts & Sciences Articles

Background

Belonging to the Actinobacteria phylum, members of the Rhodococcus genus thrive in soil, water, and even intracellularly. While most species are non-pathogenic, several cause respiratory disease in animals and, more rarely, in humans. Over 100 phages that infect Rhodococcus species have been isolated but despite their importance for Rhodococcus ecology and biotechnology applications, little is known regarding the molecular genetic interactions between phage and host during infection. To address this need, we report RNA-Seq analysis of a novel Rhodococcus erythopolis phage, WC1, analyzing both the phage and host transcriptome at various stages throughout the infection process.

Results

By five …

Sovereign Seeds: Analyzing The Sustainability Of Peasant Seeds In The Context Of Climate Change And Rural Exodus In Tunisia, Alice Carlson

Independent Study Project (ISP) Collection

How sustainable are peasant seeds? I answer this question on the basis of three elements: environment, economy, and social justice. Using interviews with farmers from various regions of Tunisia, an interview with an expert on climate change and migration, and an interview with a civil society organization working to promote sustainable agriculture, I found that peasant seeds are a sustainable solution for a suffering agricultural sector. Depleted water sources and drought are bringing to light the problems with water-intensive hybrid seeds, and farmers are losing money. As young men increasingly leave the agricultural sector, women are left behind, finding themselves …

A Study Of Anthropogenic Impacts On Echinoderms In The Jambiani Intertidal Area, Zanzibar, Amaury O. Halley

Independent Study Project (ISP) Collection

The coastal region of Jambiani, Unguja, hosts a rich diversity of marine life within its extensive intertidal zones. Despite its ecological significance, this area is increasingly exposed to anthropogenic disturbances due to increased human activities. This study examines the impacts of these disturbances on the biodiversity, zonation, and species abundance of echinoderms in the intertidal habitats of Jambiani. Through a comprehensive field study involving fifteen transects and detailed substrate analysis, the project evaluated the distribution and abundance of echinoderm species and assessed the influence of human activities such as seaweed farming, anchor damage, and beach trampling on these communities. The …

Impacts Of Gas Flaring On Soil Quality In The Ecuadorian Amazon: Measuring Gas Flare Effects On Soils At Comparative Distances In Loma Del Tigre, Orellana, Francesca Lopresti

Independent Study Project (ISP) Collection

Gas flaring, the process of burning off the natural gas excreted during petroleum extraction, has recently been the source of public outcry, citing degraded public and environmental health caused by constant flaring near populated centers. While extensive research has been done on the environmental and health impacts of gas flaring, regionally specific research to the Ecuadorian Amazon is lacking. It is crucial that updated research in this region is produced to inform regulations that have the potential to minimize the physical, environmental, and economic impact of the petroleum industry on nearby, under-resourced, and marginalized communities. While air quality surrounding gas …

Género Y Resiliencia En La Amazonía Peruana: Las Experiencias Y Respuestas De Agricultoras Indígenas Ante El Cambio Climático, Zoe Klausner

Independent Study Project (ISP) Collection

El cambio climático antropogénico está redefiniendo rápidamente las relaciones humano-ambientales, especialmente en la Amazonía peruana, donde más de 66 comunidades indígenas enfrentan mayores sequías y temperaturas, afectando profundamente sus medios de vida. Crucialmente, desde la visión ecofeminista central a esta investigación se subraya que las mujeres indígenas experimentan los impactos del cambio climático más severamente y son a menudo los líderes en el fomento de la resiliencia ambiental. Esta investigación explora cómo las agricultoras indígenas de la Amazonía peruana viven el cambio climático y sus estrategias de adaptación y resiliencia. El trabajo de campo se realizó en la comunidad Ese'Eja …

Anuran Diversity And Abundance Across Two Sites With Varying Levels Of Light Pollution In El Valle De Antón, Coclé, Panamá, Jackson Dray

Independent Study Project (ISP) Collection

The impact of artificial light at night (ALAN) on anuran populations has been a subject of growing concern in ecological research. Anurans are particularly susceptible to the impacts of artificial light due to their nocturnal nature and an extensive exposure throughout various stages of life histories. Exposure to artificial light has been shown to impact the larval development and reproductive behavior of anurans. The impacts on anurans juvenile populations suggest a relationship between light pollution and anuran abundance. This study aimed to investigate the hypothesis that ALAN negatively affects the abundance and diversity of anurans. Field surveys were conducted in …

Assessing The Impact Of Climate Change On Harbor Seals: Haul-Out Patterns In Iceland Using Cmip6 Projections, Colin Lau

Independent Study Project (ISP) Collection

Harbor seals (Phoca vitulina) are known to exhibit a preference for specific environmental and weather conditions when hauling out, particularly during the pupping and molting cycles during summer. Climate change is projected to have a significant impact on the haul-out patterns and site conditions of harbor seals in Iceland, which could further diminish their dwindling population. A comprehensive literature review was conducted to identify and discuss the environmental variables that can affect haul-out probability. Among them, surface wind speed and air temperature are reported to have the biggest influence on harbor seal haul-out numbers between May and August. Climate projections …