Open Access. Powered by Scholars. Published by Universities.®

Physical Sciences and Mathematics Commons™

Open Access. Powered by Scholars. Published by Universities.®

Missouri University of Science and Technology

Discipline
Keyword
Publication Year
Publication
Publication Type
File Type

Articles 1111 - 1140 of 6056

Full-Text Articles in Physical Sciences and Mathematics

Improving Error-Bounded Compression For Cosmological Simulation, Sihuan Li, Sheng Di, Xin Liang, Zizhong Chen, Franck Cappello Nov 2018

Improving Error-Bounded Compression For Cosmological Simulation, Sihuan Li, Sheng Di, Xin Liang, Zizhong Chen, Franck Cappello

Computer Science Faculty Research & Creative Works

Cosmological simulations may produce extremely large amount of data, such that its successful run depends on large storage capacity and huge I/O bandwidth, especially in the exascale computing scale. Effective error-bounded lossy compressors with both high compression ratios and low data distortion can significantly reduce the total data size while guaranteeing the data valid for post-analysis. In this poster, we propose a novel, efficient compression model for cosmological N-body simulation framework, by combining the advantages of both space-based compression and time-based compression. The evaluation with a well-known cosmological simulation code shows that our proposed solution can get much higher compression …

Go to article

Exploring Best Lossy Compression Strategy By Combining Sz With Spatiotemporal Decimation, Xin Liang, Sheng Di, Sihuan Li, Dingwen Tao, Zizhong Chen, Franck Cappello Nov 2018

Exploring Best Lossy Compression Strategy By Combining Sz With Spatiotemporal Decimation, Xin Liang, Sheng Di, Sihuan Li, Dingwen Tao, Zizhong Chen, Franck Cappello

Computer Science Faculty Research & Creative Works

In today’s extreme-scale scientific simulations, vast volumes of data are being produced such that the data cannot be accommodated by the parallel file system or the data writing/ reading performance will be fairly low because of limited I/O bandwidth. In the past decade, many snapshot-based (or space-based) lossy compressors have been developed, most of which rely on the smoothness of the data in space. However, the simulation data may get more and more complicated in space over time steps, such that the compression ratios decrease significantly. In this paper, we propose a novel, hybrid lossy compression method by leveraging spatiotemporal …

Go to article

Correlated Tunneling Dynamics Of An Ultracold Fermi-Fermi Mixture Confined In A Double Well, J. Erdmann, Simeon I. Mistakidis, P. Schmelcher Nov 2018

Correlated Tunneling Dynamics Of An Ultracold Fermi-Fermi Mixture Confined In A Double Well, J. Erdmann, Simeon I. Mistakidis, P. Schmelcher

Physics Faculty Research & Creative Works

We Unravel The Correlated Tunneling Dynamics Of A Mass Imbalanced Few-Body Fermi-Fermi Mixture Upon Quenching The Tilt Of A Double Well. The Nonequilibrium Dynamics Of Both Species Changes From Rabi Oscillations Close To The Noninteracting Limit To A Delayed Tunneling Dynamics For Moderate Interspecies Repulsions. Considering Strong Interspecies Interactions, The Lighter Species Experiences Quantum Self-Trapping Due To The Heavier Species Which Acts As An Effective Material Barrier, While Performing Almost Perfect Rabi Oscillations. The Degree Of Entanglement, Inherent In The System, Is Analyzed And Found To Be Significant At Both Moderate And Strong Repulsions. To Relate Our Findings To Possible …

Go to article

Multicellular Models Bridging Intracellular Signaling And Gene Transcription To Population Dynamics, Mohammad Aminul Islam, Satyaki Roy, Sajal K. Das, Dipak Barua Nov 2018

Multicellular Models Bridging Intracellular Signaling And Gene Transcription To Population Dynamics, Mohammad Aminul Islam, Satyaki Roy, Sajal K. Das, Dipak Barua

Computer Science Faculty Research & Creative Works

Cell signaling and gene transcription occur at faster time scales compared to cellular death, division, and evolution. Bridging these multiscale events in a model is computationally challenging. We introduce a framework for the systematic development of multiscale cell population models. Using message passing interface (MPI) parallelism, the framework creates a population model from a single-cell biochemical network model. It launches parallel simulations on a single-cell model and treats each stand-alone parallel process as a cell object. MPI mediates cell-to-cell and cell-to-environment communications in a server-client fashion. In the framework, model-specific higher level rules link the intracellular molecular events to cellular …

Go to article

Phase Contrast Time-Lapse Microscopy Datasets With Automated And Manual Cell Tracking Annotations, Dai Fei Elmer Ker, Zhaozheng Yin, For Full List Of Authors, See Publisher's Website. Nov 2018

Phase Contrast Time-Lapse Microscopy Datasets With Automated And Manual Cell Tracking Annotations, Dai Fei Elmer Ker, Zhaozheng Yin, For Full List Of Authors, See Publisher's Website.

Computer Science Faculty Research & Creative Works

Phase contrast time-lapse microscopy is a non-destructive technique that generates large volumes of image-based information to quantify the behaviour of individual cells or cell populations. To guide the development of algorithms for computer-aided cell tracking and analysis, 48 time-lapse image sequences, each spanning approximately 3.5 days, were generated with accompanying ground truths for C2C12 myoblast cells cultured under 4 different media conditions, including with fibroblast growth factor 2 (FGF2), bone morphogenetic protein 2 (BMP2), FGF2 + BMP2, and control (no growth factor). The ground truths generated contain information for tracking at least 3 parent cells and their descendants within these …

Go to article

Bio-Inspired Polydopamine Surface Modification Of Nanodiamonds And Its Reduction Of Silver Nanoparticles, Yun Zeng, Wenyan Liu, Risheng Wang Nov 2018

Bio-Inspired Polydopamine Surface Modification Of Nanodiamonds And Its Reduction Of Silver Nanoparticles, Yun Zeng, Wenyan Liu, Risheng Wang

Chemistry Faculty Research & Creative Works

Surface functionalization of nanodiamonds (NDs) is still challenging due to the diversity of functional groups on the ND surfaces. Here, we demonstrate a simple protocol for the multifunctional surface modification of NDs by using mussel-inspired polydopamine (PDA) coating. In addition, the functional layer of PDA on NDs could serve as a reducing agent to synthesize and stabilize metal nanoparticles. Dopamine (DA) can self-polymerize and spontaneously form PDA layers on ND surfaces if the NDs and dopamine are simply mixed together. The thickness of a PDA layer is controlled by varying the concentration of DA. A typical result shows that a …

Go to article

Early Detection Of Disease Using Electronic Health Records And Fisher's Wishart Discriminant Analysis, Sijia Yang, Jian Bian, Zeyi Sun, Licheng Wang, Haojin Zhu, Haoyi Xiong, Yu Li Nov 2018

Early Detection Of Disease Using Electronic Health Records And Fisher's Wishart Discriminant Analysis, Sijia Yang, Jian Bian, Zeyi Sun, Licheng Wang, Haojin Zhu, Haoyi Xiong, Yu Li

Engineering Management and Systems Engineering Faculty Research & Creative Works

Linear Discriminant Analysis (LDA) is a simple and effective technique for pattern classification, while it is also widely-used for early detection of diseases using Electronic Health Records (EHR) data. However, the performance of LDA for EHR data classification is frequently affected by two main factors: ill-posed estimation of LDA parameters (e.g., covariance matrix), and "linear inseparability" of the EHR data for classification. To handle these two issues, in this paper, we propose a novel classifier FWDA -- Fisher's Wishart Discriminant Analysis, which is developed as a faster and robust nonlinear classifier. Specifically, FWDA first surrogates the distribution of "potential" inverse …

Go to article

Crustal Azimuthal Anisotropy Beneath The Southeastern Tibetan Plateau And Its Geodynamic Implications, Tuo Zheng, Zhifeng Ding, Jieyuan Ning, Lijun Chang, Xingchen Wang, Fansheng Kong, Kelly H. Liu, Stephen S. Gao Nov 2018

Crustal Azimuthal Anisotropy Beneath The Southeastern Tibetan Plateau And Its Geodynamic Implications, Tuo Zheng, Zhifeng Ding, Jieyuan Ning, Lijun Chang, Xingchen Wang, Fansheng Kong, Kelly H. Liu, Stephen S. Gao

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

The fast orientation and magnitude of crustal azimuthal anisotropy beneath the southeastern Tibetan Plateau and adjacent areas are measured by analyzing the sinusoidal moveout of the P to S converted phase from the Moho. Beneath the tectonically active plateau, the mean magnitude is 0.48 ±Â 0.13 s, which is about twice as large as that observed in the stable Sichuan Basin (0.23 ±Â 0.10 s). The two areas are separated by the Longmenshan fault zone, a zone of devastating earthquakes including the 12 May 2008 MW 7.9 Wenchuan earthquake. Fault orthogonal fast orientations observed in the southern Longmenshan fault …

Go to article

Quench Dynamics Of Finite Bosonic Ensembles In Optical Lattices With Spatially Modulated Interactions, T. Plaßmann, Simeon I. Mistakidis, P. Schmelcher Oct 2018

Quench Dynamics Of Finite Bosonic Ensembles In Optical Lattices With Spatially Modulated Interactions, T. Plaßmann, Simeon I. Mistakidis, P. Schmelcher

Physics Faculty Research & Creative Works

The Nonequilibrium Quantum Dynamics Of Few Boson Ensembles Which Experience A Spatially Modulated Interaction Strength And Are Confined In Finite Optical Lattices Is Investigated. We Utilize A Cosinusoidal Spatially Modulated Effective Interaction Strength Which Is Characterized By Its Wavevector, Inhomogeneity Amplitude, Interaction Offset And A Phase. Performing Quenches Either On The Wavevector Or The Phase Of The Interaction Profile An Enhanced Imbalance Of The Interatomic Repulsion Between Distinct Spatial Regions Of The Lattice Is Induced. Following Both Quench Protocols Triggers Various Tunneling Channels And A Rich Excitation Dynamics Consisting Of A Breathing And A Cradle Mode. All Modes Are Shown …

Go to article

The Rotational Spectrum And Potential Energy Surface Of The Ar-Sio Complex, Michael C. Mccarthy, Steve Alexandre Ndengue, Richard Dawes Oct 2018

The Rotational Spectrum And Potential Energy Surface Of The Ar-Sio Complex, Michael C. Mccarthy, Steve Alexandre Ndengue, Richard Dawes

Chemistry Faculty Research & Creative Works

The rotational spectra of five isotopic species of the Ar-SiO complex have been observed at high-spectral resolution between 8 and 18 GHz using chirped Fourier transform microwave spectroscopy and a discharge nozzle source; follow-up cavity measurements have extended these measurements to as high as 35 GHz. The spectrum of the normal species is dominated by an intense progression of a-type rotational transitions arising from increasing quanta in the Si-O stretch, in which lines up to v = 12 (~14 500 cm-1) were identified. A structural determination by isotopic substitution and a hyperfine analysis of the Ar-Si17O …

Go to article

Polymer Coated Gold-Ferric Oxide Superparamagnetic Nanoparticles For Theranostic Applications, Muhammad Raisul Abedin, Siddesh Umapathi, Harika Mahendrakar, Tunyaboon Laemthong, Holly Coleman, Denise Muchangi, Santimukul Santra, Manashi Nath, Sutapa Barua Oct 2018

Polymer Coated Gold-Ferric Oxide Superparamagnetic Nanoparticles For Theranostic Applications, Muhammad Raisul Abedin, Siddesh Umapathi, Harika Mahendrakar, Tunyaboon Laemthong, Holly Coleman, Denise Muchangi, Santimukul Santra, Manashi Nath, Sutapa Barua

Chemistry Faculty Research & Creative Works

Background: Engineered inorganic nanoparticles (NPs) are essential components in the development of nanotechnologies. For applications in nanomedicine, particles need to be functionalized to ensure a good dispersibility in biological fluids. In many cases however, functionalization is not sufficient: the particles become either coated by a corona of serum proteins or precipitate out of the solvent. We show that by changing the coating of magnetic iron oxide NPs using poly-l-lysine (PLL) polymer the colloidal stability of the dispersion is improved in aqueous solutions including water, phosphate buffered saline (PBS), PBS with 10% fetal bovine serum (FBS) and cell culture medium, and …

Go to article

Gw170817: Measurements Of Neutron Star Radii And Equation Of State, B. P. Abbott, Marco Cavaglia, For Full List Of Authors, See Publisher's Website. Oct 2018

Gw170817: Measurements Of Neutron Star Radii And Equation Of State, B. P. Abbott, Marco Cavaglia, For Full List Of Authors, See Publisher's Website.

Physics Faculty Research & Creative Works

On 17 August 2017, the LIGO and Virgo observatories made the first direct detection of gravitational waves from the coalescence of a neutron star binary system. The detection of this gravitational-wave signal, GW170817, offers a novel opportunity to directly probe the properties of matter at the extreme conditions found in the interior of these stars. The initial, minimal-assumption analysis of the LIGO and Virgo data placed constraints on the tidal effects of the coalescing bodies, which were then translated to constraints on neutron star radii. Here, we expand upon previous analyses by working under the hypothesis that both bodies were …

Go to article

Real-Time Observation Of Molecular Spinning With Angular High-Harmonic Spectroscopy, Lixin He, Pengfei Lan, Anh-Thu Le, Baoning Wang, Bincheng Wang, Xiaosong Zhu, Peixiang Lu, C. D. Lin Oct 2018

Real-Time Observation Of Molecular Spinning With Angular High-Harmonic Spectroscopy, Lixin He, Pengfei Lan, Anh-Thu Le, Baoning Wang, Bincheng Wang, Xiaosong Zhu, Peixiang Lu, C. D. Lin

Physics Faculty Research & Creative Works

We demonstrate an angular high-harmonic spectroscopy method to probe the spinning dynamics of a molecular rotation wave packet in real time. With the excitation of two time-delayed, polarization-skewed pump pulses, the molecular ensemble is impulsively kicked to rotate unidirectionally, which is subsequently irradiated by another delayed probe pulse for high-order harmonic generation (HHG). The spatiotemporal evolution of the molecular rotation wave packet is visualized from the time-dependent angular distributions of the HHG yields and frequency shift measured at various polarization directions and time delays of the probe pulse. The observed frequency shift in HHG is demonstrated to arise from the …

Go to article

Explosive Dust Test Vessel Comparison Using Pulverized Pittsburgh Coal, Jacob Miller, Jay Schafler, Phillip R. Mulligan, Robert Eades, Kyle A. Perry, Catherine E. Johnson Oct 2018

Explosive Dust Test Vessel Comparison Using Pulverized Pittsburgh Coal, Jacob Miller, Jay Schafler, Phillip R. Mulligan, Robert Eades, Kyle A. Perry, Catherine E. Johnson

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Explosions of coal dust are a major safety concern within the coal mining industry. The explosion and subsequent fires caused by coal dust can result in significant property damage, loss of life in underground coal mines and damage to coal processing facilities. The United States Bureau of Mines conducted research on coal dust explosions until 1996 when it was dissolved. In the following years, the American Society for Testing and Materials (ASTM) developed a test standard, ASTM E1226, to provide a standard test method characterizing the “explosibility” of particulate solids of combustible materials suspended in air. The research presented herein …

Go to article

Novel Porous Polymer Compositions For The Synthesis Of Monolithic Bimodal Microporous/Macroporous Carbon Compositions Useful For Selective Co₂ Sequestration, Nicholas Leventis, Chariklia Sotiriou-Leventis, Malik Adnan Saeed Sep 2018

Novel Porous Polymer Compositions For The Synthesis Of Monolithic Bimodal Microporous/Macroporous Carbon Compositions Useful For Selective Co₂ Sequestration, Nicholas Leventis, Chariklia Sotiriou-Leventis, Malik Adnan Saeed

Chemistry Faculty Research & Creative Works

The present invention discloses novel porous polymeric compositions comprising random copolymers of amides, imides, ureas, and carbamic-anhydrides, useful for the synthesis of monolithic bimodal microporous/macroporous carbon aerogels. It also discloses methods for producing said microporous/macroporous carbon aerogels by the reaction of a polyisocyanate compound and a polycarboxylic acid compound, followed by pyrolytic carbonization, and by reactive etching with CO2 at elevated temperatures. Also disclosed are methods for using the microporous/macroporous carbon aerogels in the selective capture and sequestration of carbon dioxide.

Go to article

Solid State Nmr Spectroscopy/Imaging In Situ Measuring Devices And Methods For Calibration And Determining One Or More Quantitative Properties Of A Target Sampleabstract, Lingyu Chi, Ming Huang, R. Gerald Ii, Klaus Woelk Sep 2018

Solid State Nmr Spectroscopy/Imaging In Situ Measuring Devices And Methods For Calibration And Determining One Or More Quantitative Properties Of A Target Sampleabstract, Lingyu Chi, Ming Huang, R. Gerald Ii, Klaus Woelk

Chemistry Faculty Research & Creative Works

In situ measuring devices, methods of making the same, and methods of using the same are provided herein. The in situ measuring devices can include a capillary tube having a reference material sealed inside the capillary tube, where the capillary tube is positioned inside of a solid state or MAS NMR rotor. A target sample can also be positioned in the interior of the solid state or MAS NMR rotor but is sequestered from the reference material by a capillary tube wall. The in situ measuring devices can be used in solid state MAS NMR spectroscopy to quantify one or …

Go to article

Solid State Nmr Spectroscopy/Imaging In Situ Measuring Devices And Methods For Calibration And Determining One Or More Quantitative Properties Of A Target Sample, Lingyu Chi, Ming Huang, Rex E. Gerald, Klaus Woelk Sep 2018

Solid State Nmr Spectroscopy/Imaging In Situ Measuring Devices And Methods For Calibration And Determining One Or More Quantitative Properties Of A Target Sample, Lingyu Chi, Ming Huang, Rex E. Gerald, Klaus Woelk

Chemistry Faculty Research & Creative Works

In situ measuring devices, methods of making the same, and methods of using the same are provided herein. The in situ measuring devices can include a capillary tube having a reference material sealed inside the capillary tube, where the capillary tube is positioned inside of a solid state or MAS NMR rotor. A target sample can also be positioned in the interior of the solid state or MAS NMR rotor but is sequestered from the reference material by a capillary tube wall. The in situ measuring devices can be used in solid state MAS NMR spectroscopy to quantify one or …

Go to article

A Further Extension Of The Extended Riemann-Liouville Fractional Derivative Operator, Martin Bohner, Gauhar Rahman, Shahid Mubeen, Kottakkaran Sooppy Nisar Sep 2018

A Further Extension Of The Extended Riemann-Liouville Fractional Derivative Operator, Martin Bohner, Gauhar Rahman, Shahid Mubeen, Kottakkaran Sooppy Nisar

Mathematics and Statistics Faculty Research & Creative Works

The main objective of this paper is to establish the extension of an extended fractional derivative operator by using an extended beta function recently defined by Parmar et al. by considering the Bessel functions in its kernel. We also give some results related to the newly defined fractional operator, such as Mellin transform and relations to extended hypergeometric and Appell's function via generating functions.

Go to article

Gravitational Effects In G -Factor Measurements And High-Precision Spectroscopy: Limits Of Einstein's Equivalence Principle, Ulrich D. Jentschura Sep 2018

Gravitational Effects In G -Factor Measurements And High-Precision Spectroscopy: Limits Of Einstein's Equivalence Principle, Ulrich D. Jentschura

Physics Faculty Research & Creative Works

We study the interplay of general relativity, the equivalence principle, and high-precision experiments involving atomic transitions and g-factor measurements. In particular, we derive a generalized Dirac Hamiltonian, which describes both the gravitational coupling for weak fields and the electromagnetic coupling, e.g., to a central Coulomb field. An approximate form of this Hamiltonian is used to derive the leading gravitational corrections to transition frequencies and g factors. The position dependence of atomic transitions is shown to be compatible with the equivalence principle, up to a very good approximation. The compatibility of g-factor measurements requires a deeper subtle analysis in order to …

Go to article

Electronic Fingerprints Of Cr And V Dopants In The Topological Insulator Sb₂Te₃, Wenhan Zhang, Damien West, Seng Huat Lee, Yunsheng Qiu, Cui-Zu Chang, Jagadeesh S. Moodera, Yew San Hor, Shengbai Zhang, Weida Wu Sep 2018

Electronic Fingerprints Of Cr And V Dopants In The Topological Insulator Sb₂Te₃, Wenhan Zhang, Damien West, Seng Huat Lee, Yunsheng Qiu, Cui-Zu Chang, Jagadeesh S. Moodera, Yew San Hor, Shengbai Zhang, Weida Wu

Physics Faculty Research & Creative Works

By combining scanning tunneling microscopy/spectroscopy and first-principles calculations, we systematically study the local electronic states of magnetic dopants V and Cr in the topological insulator (TI) Sb2Te3. Spectroscopic imaging shows diverse local defect states between Cr and V, which agree with our first-principle calculations. The unique spectroscopic features of V and Cr dopants provide electronic fingerprints for the codoped magnetic TI samples with the enhanced quantum anomalous Hall effect. Our results also facilitate the exploration of the underlying mechanism of the enhanced quantum anomalous Hall temperature in Cr/V codoped TIs.

Go to article

Tunnel Diode Resonator For Precision Magnetic Susceptibility Measurements In A Mk Temperature Range And Large Dc Magnetic Fields, Hyunsoo Kim, M. A. Tanatar, R. Prozorov Sep 2018

Tunnel Diode Resonator For Precision Magnetic Susceptibility Measurements In A Mk Temperature Range And Large Dc Magnetic Fields, Hyunsoo Kim, M. A. Tanatar, R. Prozorov

Physics Faculty Research & Creative Works

Precision radio-frequency measurements of the magnetic susceptibility using the tunnel diode resonator (TDR) technique are used to study the delicate effects in magnetic and superconducting materials. High resolution (in ppb range) measurements are particularly important for studies of the London and Campbell penetration depths in a superconductor and for the investigation of magnetic transitions in (anti)ferromagnets. Due to the small rf magnetic-excitation in a mOe range, the TDR is especially useful at low-temperatures in a mK range, if Joule heating generated in the TDR circuitry is efficiently removed and the circuit is stabilized with sub-mK precision. Unfortunately, the circuit has …

Go to article

A Distributed Semi-Supervised Platform For Dnase-Seq Data Analytics Using Deep Generative Convolutional Networks, Shayan Shams, Richard Platania, Joohyun Kim, Jian Zhang, Kisung Lee, Seungwon Yang, Seung Jong Park Aug 2018

A Distributed Semi-Supervised Platform For Dnase-Seq Data Analytics Using Deep Generative Convolutional Networks, Shayan Shams, Richard Platania, Joohyun Kim, Jian Zhang, Kisung Lee, Seungwon Yang, Seung Jong Park

Computer Science Faculty Research & Creative Works

A deep learning approach for analyzing DNase-seq datasets is presented, which has promising potentials for unraveling biological underpinnings on transcription regulation mechanisms. Further understanding of these mechanisms can lead to important advances in life sciences in general and drug, biomarker discovery, and cancer research in particular. Motivated by recent remarkable advances in the field of deep learning, we developed a platform, Deep Semi-Supervised DNase-seq Analytics (DSSDA). Primarily empowered by deep generative Convolutional Networks (ConvNets), the most notable aspect is the capability of semi-supervised learning, which is highly beneficial for common biological settings often plagued with a less sufficient number of …

Go to article

Evidence For The Formation Of A Radical-Mediated Flavin-N5 Covalent Intermediate, Yumin Dai, Hannah Valentino, Pablo Sobrado Aug 2018

Evidence For The Formation Of A Radical-Mediated Flavin-N5 Covalent Intermediate, Yumin Dai, Hannah Valentino, Pablo Sobrado

Chemistry Faculty Research & Creative Works

The redox-neutral reaction catalyzed by 2-haloacrylate hydratase (2-HAH) leads to the conversion of 2-chloroacrylate to pyruvate. Previous mechanistic studies demonstrated the formation of a flavin-iminium ion as an important intermediate in the 2-HAH catalytic cycle. Time-resolved flavin absorbance studies were performed in this study, and the data showed that the enzyme is capable of stabilizing both anionic and neutral flavin semiquinone species. The presence of a radical scavenger decreases the activity in a concentration-dependent manner. These data are consistent with the flavin iminium intermediate occurring by radical recombination.

Go to article

Gpu-Accelerated Large-Scale Genome Assembly, Sayan Goswami, Kisung Lee, Shayan Shams, Seung Jong Park Aug 2018

Gpu-Accelerated Large-Scale Genome Assembly, Sayan Goswami, Kisung Lee, Shayan Shams, Seung Jong Park

Computer Science Faculty Research & Creative Works

Spurred by a widening gap between hardware accelerators and traditional processors, numerous bioinformatics applications have harnessed the computing power of GPUS and reported substantial performance improvements compared to their CPU-based counterparts. However, most of these GPU-based applications only focus on the read alignment problem, while the field of de novo assembly still relies mostly on CPU-based solutions. This is primarily due to the nature of the assembly workload which is not only compute-intensive but also extremely data-intensive. Such workloads require large memories, making it difficult to adapt them to use GPUS with their limited memory capacities. To the best of …

Go to article

Algorithms Cs2500, Simone Silvestri, Ken Goss, Zhishan Guo, Ashikahmed Bhuiyan Aug 2018

Algorithms Cs2500, Simone Silvestri, Ken Goss, Zhishan Guo, Ashikahmed Bhuiyan

AOER Course Materials

No abstract provided.

Go to article

Quantum Critical Behavior Of A Three-Dimensional Superfluid-Mott Glass Transition, Jack Crewse, Cameron Lerch, Thomas Vojta Aug 2018

Quantum Critical Behavior Of A Three-Dimensional Superfluid-Mott Glass Transition, Jack Crewse, Cameron Lerch, Thomas Vojta

Physics Faculty Research & Creative Works

The superfluid to insulator quantum phase transition of a three-dimensional particle-hole symmetric system of disordered bosons is studied. To this end, a site-diluted quantum rotor Hamiltonian is mapped onto a classical (3+1)-dimensional XY model with columnar disorder and analyzed by means of large-scale Monte Carlo simulations. The superfluid-Mott insulator transition of the clean, undiluted system is in the four-dimensional XY universality class and shows mean-field critical behavior with logarithmic corrections. The clean correlation length exponent ν=1/2 violates the Harris criterion, indicating that disorder must be a relevant perturbation. For nonzero dilutions below the lattice percolation threshold of pc=0.688392, …

Go to article

The Role Of Multiple Electron Processes For Fast Ion H₂O Collisions, N. Bachi, G. S. Otero, S. Otranto, Ronald E. Olson Aug 2018

The Role Of Multiple Electron Processes For Fast Ion H₂O Collisions, N. Bachi, G. S. Otero, S. Otranto, Ronald E. Olson

Physics Faculty Research & Creative Works

In this work, collision processes between C6+, O8+ and Si13+ ions and H2O molecules that lead to target ionization are studied by means of the classical trajectory Monte Carlo method. We employ an 8-electron model in which the H2O electron densities and energies dynamically adapt during ionization processes to those corresponding to the H2Oq+ ions by assuming vertical transitions between the different molecular ionic states. Net total ionization cross sections and single differential cross sections in energy and angle are shown for 4 MeV/u projectiles and compared to available …

Go to article

Extinction Transitions In Correlated External Noise, Alexander H. O. Wada, Matthew Small, Thomas Vojta Aug 2018

Extinction Transitions In Correlated External Noise, Alexander H. O. Wada, Matthew Small, Thomas Vojta

Physics Faculty Research & Creative Works

We analyze the influence of long-range correlated (colored) external noise on extinction phase transitions in growth and spreading processes. Uncorrelated environmental noise (i.e., temporal disorder) was recently shown to give rise to an unusual infinite-noise critical point [Europhys. Lett. 112, 30002 (2015)EULEEJ0295-507510.1209/0295-5075/112/30002]. It is characterized by enormous density fluctuations that increase without limit at criticality. As a result, a typical population decays much faster than the ensemble average, which is dominated by rare events. Using the logistic evolution equation as an example, we show here that positively correlated (red) environmental noise further enhances these effects. This means, the correlations accelerate …

Go to article

Scanning Tunneling Spectroscopy Investigations Of Superconducting-Doped Topological Insulators: Experimental Pitfalls And Results, Stefan Wilfert, Paolo Sessi, Zhiwei Wang, Henrik Schmidt, M. Carmen Martínez-Velarte, Seng Huat Lee, Yew San Hor, Alexander F. Otte, Yoichi Ando, Weida Wu, Matthias Bode Aug 2018

Scanning Tunneling Spectroscopy Investigations Of Superconducting-Doped Topological Insulators: Experimental Pitfalls And Results, Stefan Wilfert, Paolo Sessi, Zhiwei Wang, Henrik Schmidt, M. Carmen Martínez-Velarte, Seng Huat Lee, Yew San Hor, Alexander F. Otte, Yoichi Ando, Weida Wu, Matthias Bode

Physics Faculty Research & Creative Works

Recently, the doping of topological insulators has attracted significant interest as a potential route towards topological superconductivity. Because many experimental techniques lack sufficient surface sensitivity, however, definite proof of the coexistence of topological surface states and surface superconductivity is still outstanding. Here we report on highly surface sensitive scanning tunneling microscopy and spectroscopy experiments performed on Tl-doped Bi2Te3, a three-dimensional topological insulator which becomes superconducting in the bulk at TC=2.3 K. Landau level spectroscopy as well as quasiparticle interference mapping clearly demonstrated the presence of a topological surface state with a Dirac point energy …

Go to article

Dynamics Of Paramagnetic And Ferromagnetic Ellipsoidal Particles In Shear Flow Under A Uniform Magnetic Field, Christopher A. Sobecki, Jie Zhang, Yanzhi Zhang, Cheng Wang Aug 2018

Dynamics Of Paramagnetic And Ferromagnetic Ellipsoidal Particles In Shear Flow Under A Uniform Magnetic Field, Christopher A. Sobecki, Jie Zhang, Yanzhi Zhang, Cheng Wang

Mathematics and Statistics Faculty Research & Creative Works

We investigate the two-dimensional dynamic motion of magnetic particles of ellipsoidal shapes in shear flow under the influence of a uniform magnetic field. In the first part, we present a theoretical analysis of the rotational dynamics of the particles in simple shear flow. By considering paramagnetic and ferromagnetic particles, we study the effects of the direction and strength of the magnetic field on the particle rotation. The critical magnetic-field strength, at which particle rotation is impeded, is determined. In a weak-field regime (i.e., below the critical strength) where the particles execute complete rotations, the symmetry property of the rotational velocity …

Go to article

First Prev Next Last