Physical Sciences and Mathematics Commons^™

Odu-European Collaborations On Climate Change And Sea Level Rise Reserach, Tal Ezer

CCPO Publications

Less than five years ago, Old Dominion University started the Climate Change and Sea Level Rise Initiative (CCSLRI), which led to the recently established Mitigation and Adaptation Research Institute (MARI) and the Hampton Roads Sea Level Rise Preparedness & Resilience Intergovernmental Planning Pilot Project. This interdisciplinary area of research also has a long history in many European countries. Direct measurements of sea level started more than 200 years ago and flood mitigation measures have been in effect for a long time in London, the Netherlands and many other places. Today, reports on flooding in Norfolk, UK, by the BBC or …

Tools Managing Seed Urls (Detecting Off-Topic Pages), Yasmin Alnoamany, Michele C. Weigle, Michael L. Nelson

Computer Science Presentations

PDF of a powerpoint presentation from the Columbia University Web Archiving Collaboration: New Tools and Models Conference, in New York, New York, June 4-5, 2015. Also available on Slideshare.

The Effect Of The El Nino-Southern Oscillation On U.S. Regional And Coastal Sea Level, B. D. Hamlington, R. R. Leben, K. -Y. Kim, R. S. Nerem, L. P. Atkinson, P. R. Thompson

CCPO Publications

Although much of the focus on future sea level rise concerns the long-term trend associated with anthropogenic warming, on shorter time scales, internal climate variability can contribute significantly to regional sea level. Such sea level variability should be taken into consideration when planning efforts to mitigate the effects of future sea level change. In this study, we quantify the contribution to regional sea level of the El Niño-Southern Oscillation (ENSO). Through cyclostationary empirical orthogonal function analysis (CSEOF) of the long reconstructed sea level data set and of a set of U.S. tide gauges, two global modes dominated by Pacific Ocean …

Growth In Stratospheric Chlorine From Short-Lived Chemicals Not Controlled By The Montreal Protocol, R. Hossaoni, M. P. Chipperfield, A. Saiz-Lopez, J. J. Harrison, R. Von Glasow, R. Sommariva, E. Atlas, M. Navarro, S. A. Montzka, W. Feng, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

We have developed a chemical mechanism describing the tropospheric degradation of chlorine containing very short-lived substances (VSLS). The scheme was included in a global atmospheric model and used to quantify the stratospheric injection of chlorine from anthropogenic VSLS (Cl_y^VSLS) between 2005 and 2013. By constraining the model with surface measurements of chloroform (CHCl₃), dichloromethane (CH₂Cl₂), tetrachloroethene (C₂Cl₄), trichloroethene (C₂HCl₃), and 1,2-dichloroethane (CH₂ClCH₂Cl), we infer a 2013 Cl_y^VSLS mixing ratio of 123 parts per trillion (ppt). Stratospheric injection …

Simulation Of Energetic Particle Precipitation Effects During The 2003-2004 Arctic Winter, C. E. Randall, V. L. Harvey, L. A. Holt, D. R. Marsh, D. Kinnison, B. Funke, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

Energetic particle precipitation (EPP) during the 2003-2004 Arctic winter led to the production and subsequent transport of reactive odd nitrogen (NO_x=NO+NO₂) from the mesosphere and lower thermosphere (MLT) into the stratosphere. This caused NO_x enhancements in the polar upper stratosphere in April 2004 that were unprecedented in the satellite record. Simulations of the 2003-2004 Arctic winter with the Whole Atmosphere Community Climate Model using Specified Dynamics (SD-WACCM) are compared to satellite measurements to assess our understanding of the observed NO_x enhancements. The comparisons show that SD-WACCM clearly displays the descent of NO_x produced …

Hampton Roads Resilient Region Reality Check: Increasing Community Resilience And Capacity To Adapt To Changes, Juita-Elena (Wie) Yusuf, Michelle Covi, Burton St. John Iii

School of Public Service Faculty Publications

The Hampton Roads Resilient Region Reality Check event was held on March 17, 2015 at Old Dominion University. The event was built on three key themes: a region-wide, multi-sectoral, and whole-of-community approach that is oriented toward actions to address SLR and flooding. This event was a collaboration between the Urban Land Institute Hampton Roads (HRULI), Old Dominion University (ODU), and the Community Engagement Working Group of the Hampton Roads Sea Level Rise Preparedness and Resilience Intergovernmental Planning Pilot Project.

The overall goals of the event were to (1) capture the perceptions of the Hampton Roads community on their risks associated …

Isquest: Finding Insertion Sequences In Prokaryotic Sequence Fragment Data, Abhishek Biswas, David T. Gauthier, Desh Ranjan, Mohammad Zubair

Computer Science Faculty Publications

Motivation: Insertion sequences (ISs) are transposable elements present in most bacterial and archaeal genomes that play an important role in genomic evolution. The increasing availability of sequenced prokaryotic genomes offers the opportunity to study ISs comprehensively, but development of efficient and accurate tools is required for discovery and annotation. Additionally, prokaryotic genomes are frequently deposited as incomplete, or draft stage because of the substantial cost and effort required to finish genome assembly projects. Development of methods to identify IS directly from raw sequence reads or draft genomes are therefore desirable. Software tools such as Optimized Annotation System for Insertion Sequences …

Reducing Coastal Risk – Structural Protection Around Greater New Orleans, Rick Luettich

May 22, 2015: Megaproject Protective Structures for Hampton Roads

No abstract provided.

Agenda, Hr Adaptation Forum

May 22, 2015: Megaproject Protective Structures for Hampton Roads

No abstract provided.

Planning And Design For Hurricane Protection With Sea Level Rise, Bob Ivarson

May 22, 2015: Megaproject Protective Structures for Hampton Roads

No abstract provided.

You're Going To Need A Bigger Boat..., Michelle Hamor

May 22, 2015: Megaproject Protective Structures for Hampton Roads

No abstract provided.

Section Abstracts: Astronomy, Mathematics And Physics With Material Science

Virginia Journal of Science

Abstracts of the Astronomy, Mathematics, and Physics with Material Science Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

Section Abstracts: Computer Science

Virginia Journal of Science

Abstracts of the Computer Science Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

Section Abstracts: Chemistry

Virginia Journal of Science

Abstracts of the Chemistry Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

Section Abstracts: Environmental Science

Virginia Journal of Science

Abstracts of the Environmental Science Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

Section Abstracts: Statistics

Virginia Journal of Science

Abstracts of the Statistics Section for the 93rd Annual Meeting of the Virginia Academy of Science, May 21-23, 2015, James Madison University, Richmond, Virginia

The Effect Of Noise On The Response Of A Vertical Cantilever Beam Energy Harvester, Michael I. Friswell, Onur Bilgen, S. Faruque Ali, Grzegorz Litak, Sondipon Adhikari

Mechanical & Aerospace Engineering Faculty Publications

An energy harvesting concept has been proposed comprising a piezoelectric patch on a vertical cantilever beam with a tip mass. The cantilever beam is excited in the transverse direction at its base. This device is highly nonlinear with two potential wells for large tip masses, when the beam is buckled. For the pre-buckled case considered here, the stiffness is low and hence the displacement response is large, leading to multiple solutions to harmonic excitation that are exploited in the harvesting device. To maximise the energy harvested in systems with multiple solutions the higher amplitude response should be preferred. This paper …

Odu Students Work On Nation's First Climate Change Adapted Neighborhood, Jugal Patel

News Items

No abstract provided.

Virginia Sea Grant Charter Signed, Richmond Times-Dispatch

News Items

No abstract provided.

Hampton Roads Must Rise To Challenge In Reducing Effects Of Climate Change, Daily Press

News Items

No abstract provided.

Circulation, Vol. 20, No. 2, Center For Coastal Physical Oceanography, Old Dominion University, Ben Hamlington

CCPO Circulation

Spring 2015 issue of Circulation, featuring the article "Uncovering Anthropogenic Sea Level Rise" by Dr. Ben Hamlington

Avoiding Spoilers On Mediawiki Fan Sites Using Memento, Shawn M. Jones

Computer Science Theses & Dissertations

A variety of fan-based wikis about episodic fiction (e.g., television shows, novels, movies) exist on the World Wide Web. These wikis provide a wealth of information about complex stories, but if readers are behind in their viewing they run the risk of encountering spoilers" -- information that gives away key plot points before the intended time of the show's writers. Enterprising readers might browse the wiki in a web archive so as to view the page prior to a specific episode date and thereby avoid spoilers. Unfortunately, due to how web archives choose the "best" page, it is still possible …

Computational Development For Secondary Structure Detection From Three-Dimensional Images Of Cryo-Electron Microscopy, Dong Si

Computer Science Theses & Dissertations

Electron cryo-microscopy (cryo-EM) as a cutting edge technology has carved a niche for itself in the study of large-scale protein complex. Although the protein backbone of complexes cannot be derived directly from the medium resolution (5-10 Å) of amino acids from three-dimensional (3D) density images, secondary structure elements (SSEs) such as alpha-helices and beta-sheets can still be detected. The accuracy of SSE detection from the volumetric protein density images is critical for ab initio backbone structure derivation in cryo-EM. So far it is challenging to detect the SSEs automatically and accurately from the density images at these resolutions. This dissertation …

Proclivity Or Popularity? Exploring Agent Heterogeneity In Network Formation, Xiaotian Wang

Computational Modeling & Simulation Engineering Theses & Dissertations

The Barabasi-Albert model (BA model) is the standard algorithm used to describe the emergent mechanism of a scale-free network. This dissertation argues that the BA model, and its variants, rarely take agent heterogeneity into account in the analysis of network formation. In social networks, however, people's decisions to connect are strongly affected by the extent of similarity. In this dissertation, the author applies an agent-based modeling (ABM) approach to reassess the Barabasi-Albert model. This study proposes that, in forming social networks, agents are constantly balancing between instrumental and intrinsic preferences. After systematic simulation and subsequent analysis, this study finds that …

A Survey Of Aquatic Organisms For The Cyanotoxin Beta-Methylamino-L-Alanine (Bmaa), Ian M. Sammler

OES Theses and Dissertations

Cyanobacteria blooms are increasing globally as a result of eutrophication. Many cyanobacteria are potentially harmful, not only because of the oxygen depleted zones created when they decay, but also because of the toxins they produce. β- Methylamino-L-alanine (BMAA), reportedly produced by many species of cyanobacteria, is a non-proteinogenic amino acid that has been linked to the development of neurodegenerative diseases (amyotrophic lateral sclerosis (ALS) and Alzheimer's) in humans. This study presents results from an assessment of BMAA in cyanobacteria and their grazers from the lower Chesapeake Bay and Lake Erie regions. BMAA was analyzed in samples prepared with the EZ:Faast™ …

Potential For Biocontrol Of Environmental Vibrio Spp. By Predatory Bacteria Bacteriovorax, Patrick Tennis

OES Theses and Dissertations

The scale of predator-prey interactions varies from the iconic (e.g., lions and gazelles) to the microscopic (e.g., protists and bacteria). Bdellovibrio-and-like-organisms (BALOs) are bacteria that prey upon other Gram-negative bacteria, including pathogens. In particular, the halophilic genus Vibrio, many species of which are disease agents, has been shown to be susceptible to attack by BALOs. One motivation of the present research is to assess the potential for biocontrol of Vibrio by Bacteriovorax. This investigation is the first to test the susceptibility of Vibrio strains (n = 26) originating from a variety of geographic locations to predation by …

Doppler Shifted Internal Waves In A Shallow Water Region, William D. Boll

OES Theses and Dissertations

Measurements of velocity fields from a high frequency ( 1.2 MHz) vertical acoustic doppler current profiler (V ADCP) along with density and temperature profiles were taken in coastal waters on the New Jersey shelf. Time series span six consecutive months from May through October 2003, capturing the transition of the water column from a highly stratified summer into a fully mixed winter season. Barotropic tides interact with variations in local bathymetry causing disturbances within the fluid medium which govern internal wave characteristics. During the months of June, July, and August, a high number of internal wave signals were observed. Spectra …

Blue Carbon In Freshwater / Brackish Marshes On The Barrier Islands Of Virginia Aboveground Net Primary Productivity And Carbon Pools, Emily Caitlin Adams

Biological Sciences Theses & Dissertations

"Blue carbon" is a relatively new concept describing carbon distributed tidally and sequestered via net production within coastal ecosystems, including seagrass beds, mangrove forests, and salt-water marshes. These systems sequester carbon at least 10 times faster than terrestrial systems. Fresh to brackish wetlands that receive irregular tidal influence due to overwash and storm events have not been typically studied as blue carbon systems. My objective was to quantify carbon pools within four interdunal fresh to brackish marshes on Hog Island, Virginia to determine their blue carbon potential. Marshes 1 and 2 were farthest from the ocean, below and above a …

Blue Carbon In Coastal Freshwater/Brackish Marshes On The Barrier Islands Of Virginia: Belowground Carbon Dynamics, Nathan M. Sedghi

Biological Sciences Theses & Dissertations

Some coastal ecosystems sequester substantially more carbon (blue carbon) than land locked systems due to high net primary production and deposition associated with oceanic influences. Most blue carbon research has focused on mangroves, seagrass beds, and salt marshes. Studies on blue carbon potential of coastal freshwater marshes are less common. Barrier islands frequently flood, with seawater reaching interior ecosystems. I examined brackish/freshwater marshes on Virginia barrier islands for possible roles as blue carbon systems. I studied four interior marshes on Hog Island, which varied in proximity to a direct overwash path and protection by a trail berm that divides northern …

In Vivo Near Ir Fluorescent Imaging Of Hollow Polymeric Nanocapsules, Venkata Suresh Patthipati

Biological Sciences Theses & Dissertations

Medical Imaging has been an integral component in medical diagnosis and therapeutics. It is frequently used in conjunction with other treatment modalities and has been used for developing applications that range from cancer management to clinical practice. Nanotechnology and its applications are foreseen to have a profound impact on life sciences. Nanomaterial based imaging has a significant potential in addressing medical challenges such as tumor localization, targeted delivery of drugs and real time diagnosis and management of circulation pathology. In particular, polymer based nanoparticles are increasingly being developed as they can be customized according to the diagnostic and/or therapeutic requirements. …