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Articles 3091 - 3120 of 5954

Full-Text Articles in Physical Sciences and Mathematics

Jet-Hadron Correlations In √ˢᴺᴺ = 200 Gev P + P And Central Au + Au Collisions, L. Adamczyk, J. K. Adkins, G. Agakishiev, S. Bültmann, I. Koralt, Star Collaboration Jan 2014

Jet-Hadron Correlations In √ˢᴺᴺ = 200 Gev P + P And Central Au + Au Collisions, L. Adamczyk, J. K. Adkins, G. Agakishiev, S. Bültmann, I. Koralt, Star Collaboration

Physics Faculty Publications

Azimuthal angular correlations of charged hadrons with respect to the axis of a reconstructed (trigger) jet in Au + Au and p + p collisions √ˢᴺᴺ = 200 GeV in STAR are presented. The trigger jet population in Au + Au collisions is biased toward jets that have not interacted with the medium, allowing easier matching of jet energies between Au + Au and p + p collisions while enhancing medium effects on the recoil jet. The associated hadron yield of the recoil jet is significantly suppressed at high transverse momentum (passoc/T) and enhanced at low passoc/T …

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Dielectron Mass Spectra From Au Plus Au Collisions At √ˢᴺᴺ = 200 Gev, L. Adamczyk, J. K. Adkins, G. Agakishiev, S. Bültmann, D. Plyku, Star Collaboration Jan 2014

Dielectron Mass Spectra From Au Plus Au Collisions At √ˢᴺᴺ = 200 Gev, L. Adamczyk, J. K. Adkins, G. Agakishiev, S. Bültmann, D. Plyku, Star Collaboration

Physics Faculty Publications

We report the STAR measurements of dielectron (e+e-) production at midrapidity ( |yee| < 1) in Au + Au collisions at √ˢᴺᴺ = 200 GeV. The measurements are evaluated in different invariant mass regions with a focus on 0.30-0.76 (ρ-like), 0.76-0.80 (ω-like), and 0.98-1.05 (ɸ-like) GeV/c2. The spectrum in the ω-like and ɸ-like regions can be well described by the hadronic cocktail simulation. In the ρ-like region, however, the vacuum ρ spectral function cannot describe the shape of the dielectron excess. In this range, an enhancement of 1.77 ±0.11(stat) ± 0.24(syst) ± 0.33(cocktail) is determined with respect to the hadronic cocktail simulation that excludes the ρ meson. The excess yield in the ρ-like region increases with the number of collision participants faster than the ω …

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Probing The Repulsive Core Of The Nucleon-Nucleon Interaction Via The 4he( E, E′ Pn) Triple-Coincidence Reaction, I. Korover, N. Muangma, O. Hen, R. Shneor, V. Sulkosky, A. Kelleher, S. Gilad, D. W. Higinbotham, H. Albataineh, L. B. Weinstein Jan 2014

Probing The Repulsive Core Of The Nucleon-Nucleon Interaction Via The 4he( E, E′ Pn) Triple-Coincidence Reaction, I. Korover, N. Muangma, O. Hen, R. Shneor, V. Sulkosky, A. Kelleher, S. Gilad, D. W. Higinbotham, H. Albataineh, L. B. Weinstein

Physics Faculty Publications

We studied simultaneously the 4He(e,e′p), 4He (e,e′pp), and 4He( e,e′pn) reactions at Q2 = 2(GeV/c)2 and xB > 1,for an (e,e′p) missing-momentum range of 400 to 830 MeV/c. The knocked-out proton was detected in coincidence with a proton or neutron recoiling almost back to back to the missing momentum, leaving the residual A = 2 system at low excitation energy. These data were used to identify two-nucleon short-range correlated pairs and to deduce their isospin structure as a function of missing momentum, in a region where the nucleon-nucleon (NN) …

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Induced Polarization Of Λ1116 In Kaon Electroproduction, Clas Collaboration, D. Adikaram, M. J. Amaryan, L. El Fassi, S. Koirala, S. E. Kuhn, M. Mayer Jan 2014

Induced Polarization Of Λ1116 In Kaon Electroproduction, Clas Collaboration, D. Adikaram, M. J. Amaryan, L. El Fassi, S. Koirala, S. E. Kuhn, M. Mayer

Physics Faculty Publications

We have measured. the induced polarization of the Λ (1116) in the reaction ep →e′K+Λ , detecting the scattered e′ and K+ in the final state along with the proton from the decay Λ → pπ− . The present study used the CEBAF Large Acceptance Spectrometer (CLAS), which allowed for a large kinematic acceptance in invariant energy W (1.6≤ W ≤ 2.7 GeV) and covered the full range of the kaon production angle at an average momentum transfer Q2 = 1.90GeV2 . In this experiment a 5.50-GeV electron beam was incident upon …

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A Compact Beam Spreader Using Rf Deflecting Cavities For The Lcls-Ii, S.U. De Silva, J. R. Delayen, R. G. Olave, L. Doolittle, P. Emma Jan 2014

A Compact Beam Spreader Using Rf Deflecting Cavities For The Lcls-Ii, S.U. De Silva, J. R. Delayen, R. G. Olave, L. Doolittle, P. Emma

Physics Faculty Publications

The LCLS-II project currently under development is designed to accelerate electron bunches up to 4 GeV and transport them to one of two FEL undulators located more than 2 km downstream of the end of the LCLS-II linac. The upgrade requires a spreader system to separate the baseline electron bunches and transport them to two undulator lines or a local dump. Fast bipolar kickers (FK) or transverse electric rf deflectors (RFD) are considered as fast-switching devices (FSD). In the RFD approach described here three design options operating at 325 MHz are studied including a superconducting rf-dipole cavity, a normal conducting …

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Fabrication And Measurements Of 500 Mhz Superconducting Double Spoke Cavity, Hyekyoung Park, C. S. Hopper, J. R. Delayen Jan 2014

Fabrication And Measurements Of 500 Mhz Superconducting Double Spoke Cavity, Hyekyoung Park, C. S. Hopper, J. R. Delayen

Physics Faculty Publications

The 500 MHz double spoke cavity has been designed for a high velocity application such as a compact electron accelerator at Center for Accelerator Science at Old Dominion University and is being built at Jefferson Lab. The geometry specific to the double spoke cavity requires a variety of tooling and fixtures. Also a number of joints are expected to make it difficult to maintain the geometric deviation from the design minimal. This paper will report the fabrication technique, resulting tolerance from the design, and comparison between the measurements and simulations.

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High Precision Determination Of The Q² Evolution Of The Bjorken Sum, A. Deur, Y. Prok, V. Burkert, D. Crabb, F. X. Girod, K. A. Griffioen, N. Guler, S. E. Kuhn, N. Kvaltine Jan 2014

High Precision Determination Of The Q² Evolution Of The Bjorken Sum, A. Deur, Y. Prok, V. Burkert, D. Crabb, F. X. Girod, K. A. Griffioen, N. Guler, S. E. Kuhn, N. Kvaltine

Physics Faculty Publications

We present a significantly improved determination of the Bjorken sum for 0.6 ≤ Q2 ≤ 4.8 GeV2 using precise new gp1 and gd1 data taken with the CLAS detector at Jefferson Lab. A higher-twist analysis of the Q2 dependence of the Bjorken sum yields the twist-4 coefficient f p-n2= -0.064 ± 0.009 ± 0.032 0.036. This leads to the color polarizabilities χ p-n E= -0.032 ± 0.024 and χp-nB= 0.032 ± 0.013. The strong force coupling is determined to be α MSS (M2Z …

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Φ-Meson Photoproduction On Hydrogen In The Neutral Decay Mode, H. Seraydaryan, M. J. Amaryan, G. Gavalian, L. Weinstein, K. P. Adhikari, D. Adikaram, R. P. Bennett, S. Bültmann, N. Guler, C. E. Hyde, S. Koirala, S. E. Kuhn, L. B. Weinstein Jan 2014

Φ-Meson Photoproduction On Hydrogen In The Neutral Decay Mode, H. Seraydaryan, M. J. Amaryan, G. Gavalian, L. Weinstein, K. P. Adhikari, D. Adikaram, R. P. Bennett, S. Bültmann, N. Guler, C. E. Hyde, S. Koirala, S. E. Kuhn, L. B. Weinstein

Physics Faculty Publications

We report the first measurement of the photoproduction cross section of the ϕ meson in its neutral decay mode in the reaction γp→pϕ(KSKL) . The experiment was performed with a tagged photon beam of energy 1.6 ≤ Eγ ≤ 3.6 GeV incident on a liquid hydrogen target of the CLAS spectrometer at the Thomas Jefferson National Accelerator Facility. The pϕ final state is identified via reconstruction of KS in the invariant mass of two oppositely charged pions and by requiring the missing particle in the reaction γp→pKSX to be KL. …

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Beam-Spin Asymmetries From Semi-Inclusive Pion Electroproduction, K. P. Adhikari, M. J. Amaryan, C. Hyde, S. Koirala, S. E. Kuhn, L. B. Weinstein, Et Al., The Clas Collaboration Jan 2014

Beam-Spin Asymmetries From Semi-Inclusive Pion Electroproduction, K. P. Adhikari, M. J. Amaryan, C. Hyde, S. Koirala, S. E. Kuhn, L. B. Weinstein, Et Al., The Clas Collaboration

Physics Faculty Publications

We have measured the moment Asin ɸLU corresponding to the polarized electron beam-spin asymmetry in semi-inclusive deep inelastic scattering. Asin ɸLU is a twist-3 quantity providing information about quark-gluon correlations. Data were taken with the CLAS Spectrometer at Jefferson Lab using a 5.498 GeV longitudinally polarized electron beam and an unpolarized liquid hydrogen target. All three pion channels (π+,π0 and π-) were measured simultaneously over a large range of kinematics within the virtuality range Q2 ≈ 1.0- 4.5 GeV2. The observable was measured with better than 1% statistical …

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J/Ѱ Polarization In P+P Collisions At √S = 200 Gev In Star, L. Adamczyk, J. K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, J. Alford, C. D. Anson, A. Aparin, D. Arkhipkin, S. Bültmann Jan 2014

J/Ѱ Polarization In P+P Collisions At √S = 200 Gev In Star, L. Adamczyk, J. K. Adkins, G. Agakishiev, M. M. Aggarwal, Z. Ahammed, I. Alekseev, J. Alford, C. D. Anson, A. Aparin, D. Arkhipkin, S. Bültmann

Physics Faculty Publications

We report on a polarization measurement of inclusive J/Ѱ mesons in the di-electron decay channel at mid-rapidity at 2 < pT < 6 GeV/c in p + p collisions at √s = 200 GeV. Data were taken with the STAR detector at RHIC. The J/Ѱ polarization measurement should help to distinguish between different models of the J/Ѱ production mechanism since they predict different pT dependences of the J/Ѱ polarization. In this analysis, J/Ѱ is studied in the helicity frame. The polarization parameter λθ measured at RHIC becomes smaller towards high pT, indicating more longitudinal J/Ѱ polarization as pT increases. The result is compared with predictions of presently available models.

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Development Of A Multi-Spoke Superconducting Cavity For Nuclear Physics, Light Sources, And Driven Systems Applications, Jean Delayen Jan 2014

Development Of A Multi-Spoke Superconducting Cavity For Nuclear Physics, Light Sources, And Driven Systems Applications, Jean Delayen

Physics Faculty Publications

No abstract provided.

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Toward A Formalism Of Modeling And Simulation Using Model Theory, Saikou Y. Diallo, Jose Padilla, Ross Gore, Heber Herencia-Zapana, Andreas Tolk Jan 2014

Toward A Formalism Of Modeling And Simulation Using Model Theory, Saikou Y. Diallo, Jose Padilla, Ross Gore, Heber Herencia-Zapana, Andreas Tolk

VMASC Publications

This article proposes a Modeling and Simulation (M&S) formalism using Model Theory. The article departs from the premise that M&S is the science that studies the nature of truth using models and simulations. Truth in models and simulations is relative as they seek to answer specific modeling questions. Consequently, truth in M&S is relative because every model is a purposeful abstraction of reality. We use Model Theory to express the proposed formalism because it is built from the premise that truth is relative. The proposed formalism allows us to: (1) deduce formal definitions and explanations of areas of study in …

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Do Groups Matter? An Agent-Based Modeling Approach To Pedestrian Egress, Andrew Collins, Terra Elzie, Erika Frydenlund, R. Michael Robinson Jan 2014

Do Groups Matter? An Agent-Based Modeling Approach To Pedestrian Egress, Andrew Collins, Terra Elzie, Erika Frydenlund, R. Michael Robinson

VMASC Publications

Festivals in city parks attended by individuals and families are a universal feature of urban life. These venues often have the common attributes of vendors and other obstacles that restrict pedestrian movement through certain areas, as well as fixed number of exits. In this study, the authors build an agent-based model (ABM) that incorporates group cohesion forces into this type of pedestrian egress scenario. The scenario considered was an evacuation of 500 people through a single exit. This allowed an investigation into the use of two different simulated pedestrian's heading updating rules.

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Measuring Sense Of Presence And User Characteristics To Predict Effective Training In An Online Simulated Virtual Environment, Gianluca De Leo, Leigh A. Diggs, Elena Radici, Thomas W. Mastaglio Jan 2014

Measuring Sense Of Presence And User Characteristics To Predict Effective Training In An Online Simulated Virtual Environment, Gianluca De Leo, Leigh A. Diggs, Elena Radici, Thomas W. Mastaglio

VMASC Publications

Introduction: Virtual-reality solutions have successfully been used to train distributed teams. This study aimed to investigate the correlation between user characteristics and sense of presence in an online virtual-reality environment where distributed teams are trained. A greater sense of presence has the potential to make training in the virtual environment more effective, leading to the formation of teams that perform better in a real environment. Being able to identify, before starting online training, those user characteristics that are predictors of a greater sense of presence can lead to the selection of trainees who would benefit most from the online simulated …

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Life In Hampton Roads Survey Press Release #5: Under Water? Sea Level Rise And Environmental Risks, Social Science Research Center, Old Dominion University Jan 2014

Life In Hampton Roads Survey Press Release #5: Under Water? Sea Level Rise And Environmental Risks, Social Science Research Center, Old Dominion University

Life in Hampton Roads Survey Report

This report examines regional and sub-regional measures of environmental risk perceptions from the 2014 Life In Hampton Roads survey (LIHR 2014) conducted by the Old Dominion University Social Science Research Center.

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Estimating The Benthic Efflux Of Dissolved Iron On The Ross Sea Continental Shelf, C. M. Marsay, P. N. Sedwick, M. S. Dinniman, P. M. Barrett, S. L. Mack, D. J. Mcgillicuddy Jr. Jan 2014

Estimating The Benthic Efflux Of Dissolved Iron On The Ross Sea Continental Shelf, C. M. Marsay, P. N. Sedwick, M. S. Dinniman, P. M. Barrett, S. L. Mack, D. J. Mcgillicuddy Jr.

CCPO Publications

Continental margin sediments provide a potentially large but poorly constrained source of dissolved iron (dFe) to the upper ocean. The Ross Sea continental shelf is one region where this benthic supply is thought to play a key role in regulating the magnitude of seasonal primary production. Here we present data collected during austral summer 2012 that reveal contrasting low surface (0.08 +/- 0.07 nM) and elevated near-seafloor (0.74 +/- 0.47 nM) dFe concentrations. Combining these observations with results from a high-resolution physical circulation model, we estimate dFe efflux of 5.8 x 10(7) mol yr(-1) from the deeper portions (>400m) …

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Editorial-The 5th International Workshop On Modeling The Ocean (Iwmo 2013), Jarle Berntsen, Lie-Yauw Oey, Tal Ezer, Richard Greatbatch, Huijie Xue, Yasumasa Miyazawa Jan 2014

Editorial-The 5th International Workshop On Modeling The Ocean (Iwmo 2013), Jarle Berntsen, Lie-Yauw Oey, Tal Ezer, Richard Greatbatch, Huijie Xue, Yasumasa Miyazawa

CCPO Publications

The 5th International Workshop on Modeling the Ocean (IWMO http://www.uib.no/en/IWMO2013/-58927/iwmo2013-bergen-norway) was held in June 17–20, in Bergen, Norway. The historic city of Bergen is the gateway to the fjords and a center for oceanic research. The workshop was hosted by the University of Bergen and also sponsored by the Research Council of Norway. Approximately 80 researchers worldwide participated in the workshop. Professor Mellor, Princeton University, gave the keynote lecture.

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Can We Predict The Future: Juvenile Finfish And Their Seagrass Nurseries In The Chesapeake Bay, Cynthia M. Jones Jan 2014

Can We Predict The Future: Juvenile Finfish And Their Seagrass Nurseries In The Chesapeake Bay, Cynthia M. Jones

OES Faculty Publications

The importance of estuarine seagrass beds as nurseries for juvenile fish has become a universal paradigm, especially for estuaries that are as important as the Chesapeake Bay. Yet, scientific tests of this hypothesis were equivocal depending on species, location, and metrics. Moreover, seagrasses themselves are under threat and one-third of seagrasses have disappeared worldwide with 65 of their losses occurring in estuaries. Although there have been extensive studies of seagrasses in the Chesapeake Bay, surprisingly few studies have quantified the relationship between seagrass as nurseries for finfish in the Bay. Of the few studies that have directly evaluated the use …

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The Role Of Politics And Proximity In Sea Level Rise Policy Salience: A Study Of Virginia Legislators’ Perceptions, Juita-Elena (Wie) Yusuf, Burton St. John Iii, Ivan K. Ash Jan 2014

The Role Of Politics And Proximity In Sea Level Rise Policy Salience: A Study Of Virginia Legislators’ Perceptions, Juita-Elena (Wie) Yusuf, Burton St. John Iii, Ivan K. Ash

School of Public Service Faculty Publications

The acceleration of sea level rise (SLR) has become a threat to the stability of nation-states worldwide and associated with risks to environmental sustainability, economic infrastructure, and public health. However, from both an international and U.S. perspective, there is a lack of research examining legislative decision makers’ perceptions about policies regarding SLR. This study addresses that gap by examining how politics and proximity affects Virginia state legislators’ perceptions of the saliency of SLR. A survey of these legislators reveals their perceptions of credible sources of information, SLR-related risk, and who should take the lead to address SLR. While this study …

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Engineering Collaborations In Medical Modeling And Simulation, Frederic D. Mckenzie, Salim Chemlal, Tom Hubbard, Robert E. Kelly, Roderick C. Borgie, David A. Besachio, Michel Audette Jan 2014

Engineering Collaborations In Medical Modeling And Simulation, Frederic D. Mckenzie, Salim Chemlal, Tom Hubbard, Robert E. Kelly, Roderick C. Borgie, David A. Besachio, Michel Audette

Computational Modeling & Simulation Engineering Faculty Publications

Fifty years ago computer science was just beginning to see common acceptance as a growing discipline and very few universities had a computer science department although other departments were utilizing computers and software to enhance their methodologies. We believe modeling and simulation (M&S) is on a similar path. Many other disciplines utilize M&S to enhance their methodologies but we also believe that M&S fundamentals can be essential in making better decisions by utilizing the appropriate model for the problem at hand, expanding the solution space through simulation, and understanding it through visualization and proper analyses. After our students learn these …

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Graph Partitioning Using Matrix Values For Preconditioning Symmetric Positive Definite Systems, Eugenr Vecharynski, Yousef Saad, Masha Sosonkina Jan 2014

Graph Partitioning Using Matrix Values For Preconditioning Symmetric Positive Definite Systems, Eugenr Vecharynski, Yousef Saad, Masha Sosonkina

Computational Modeling & Simulation Engineering Faculty Publications

Prior to the parallel solution of a large linear system, it is required to perform a partitioning of its equations/unknowns. Standard partitioning algorithms are designed using the considerations of the efficiency of the parallel matrix-vector multiplication, and typically disregard the information on the coefficients of the matrix. This information, however, may have a significant impact on the quality of the preconditioning procedure used within the chosen iterative scheme. In the present paper, we suggest a spectral partitioning algorithm, which takes into account the information on the matrix coefficients and constructs partitions with respect to the objective of enhancing the quality …

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Estimating Hydroxyl Radical Photochemical Formation Rates In Natural Waters During Long-Term Laboratory Irradiation Experiments, Luni Sun, Hongmei Chen, Hussain A. Abdulla, Kenneth Mopper Jan 2014

Estimating Hydroxyl Radical Photochemical Formation Rates In Natural Waters During Long-Term Laboratory Irradiation Experiments, Luni Sun, Hongmei Chen, Hussain A. Abdulla, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

In this study it was observed that, during long-term irradiations (>1 day) of natural waters, the methods for measuring hydroxyl radical (˙OH) formation rates based upon sequentially determined cumulative concentrations of photoproducts from probes significantly underestimate actual ˙OH formation rates. Performing a correction using the photodegradation rates of the probe products improves the ˙OH estimation for short term irradiations (<1 day), but not long term irradiations. Only the ‘instantaneous’ formation rates, which were obtained by adding probes to aliquots at each time point and irradiating these sub-samples for a short time (≤2 h), were found appropriate for accurately estimating ˙OH photochemical formation rates during long-term laboratory irradiation experiments. Our results also showed that in iron- and dissolved organic matter (DOM)-rich water samples, ˙OH appears to be mainly produced from the Fenton reaction initially, but subsequently from other sources possibly from DOM photoreactions. Pathways of ˙OH formation in long-term irradiations in relation to H2O2 and iron concentrations are discussed.

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Retrieval Of Carbon Dioxide Vertical Profiles From Solar Occultation Observations And Associated Error Budgets For Ace-Fts And Cass-Fts, C. E. Sioris, C. D. Boone, R. Nassar, K. J. Sutton, I. E. Gordon, K. A. Walker, P. F. Bernath Jan 2014

Retrieval Of Carbon Dioxide Vertical Profiles From Solar Occultation Observations And Associated Error Budgets For Ace-Fts And Cass-Fts, C. E. Sioris, C. D. Boone, R. Nassar, K. J. Sutton, I. E. Gordon, K. A. Walker, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

An algorithm is developed to retrieve the vertical profile of carbon dioxide in the 5 to 25 km altitude range using mid-infrared solar occultation spectra from the main instrument of the ACE (Atmospheric Chemistry Experiment) mission, namely the Fourier transform spectrometer (FTS). The main challenge is to find an atmospheric phenomenon which can be used for accurate tangent height determination in the lower atmosphere, where the tangent heights (THs) calculated from geometric and timing information are not of sufficient accuracy. Error budgets for the retrieval of CO2 from ACE-FTS and the FTS on a potential follow-on mission named CASS …

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Derivation Of Tropospheric Methane From Tccon Ch4 And Hf Total Column Observations, K. M. Saad, D. Wunch, P. Bernath, C. Boone, B. Connor, N. M. Deutscher, D.W.T. Griffith, R. Kivi, J. Notholt, C. Roehl, M. Schneider, V. Sherlock, P. O. Wennberg Jan 2014

Derivation Of Tropospheric Methane From Tccon Ch4 And Hf Total Column Observations, K. M. Saad, D. Wunch, P. Bernath, C. Boone, B. Connor, N. M. Deutscher, D.W.T. Griffith, R. Kivi, J. Notholt, C. Roehl, M. Schneider, V. Sherlock, P. O. Wennberg

Chemistry & Biochemistry Faculty Publications

The Total Carbon Column Observing Network (TCCON) is a global ground-based network of Fourier transform spectrometers that produce precise measurements of column-averaged dry-air mole fractions of atmospheric methane (CH4). Temporal variability in the total column of CH4 due to stratospheric dynamics obscures fluctuations and trends driven by tropospheric transport and local surface fluxes that are critical for understanding CH4 sources and sinks. We reduce the contribution of stratospheric variability from the total column average by subtracting an estimate of the stratospheric CH4 derived from simultaneous measurements of hydrogen fluoride (HF). HF provides a proxy for …

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Concordance Between Phylogeographic And Biogeographic Boundaries In The Coral Triangle: Conservation Implications Based On Comparative Analyses Of Multiple Giant Clam Species, Timery S. Deboer, Maria Rio Abdon Naguit, Mark V. Erdmann, Maria Carmen A. Ablan-Lagman, Ambariyanto, Kent E. Carpenter, Abdul Hamid A. Toha, Paul H. Barber Jan 2014

Concordance Between Phylogeographic And Biogeographic Boundaries In The Coral Triangle: Conservation Implications Based On Comparative Analyses Of Multiple Giant Clam Species, Timery S. Deboer, Maria Rio Abdon Naguit, Mark V. Erdmann, Maria Carmen A. Ablan-Lagman, Ambariyanto, Kent E. Carpenter, Abdul Hamid A. Toha, Paul H. Barber

Biological Sciences Faculty Publications

Marine habitats are in decline worldwide, precipitating a strong interest in marine conservation. The use of biogeographic data to designate ecoregions has had significant impacts on terrestrial conservation efforts. However, classification of marine environments into ecoregions has only become available in the last several years, based on biogeographic data supplemented by geomorphology, ocean currents, and water temperatures. Here we use a comparative phylogeographic approach to test for concordant phylogeographic patterns in three closely related species of Tridacna giant clams across the Coral Triangle, the most biodiverse marine region in the world and one of the most threatened. Data from a …

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Detection Of Seagrass Scars Using Sparse Coding And Morphological Filter, Ender Oguslu, Sertan Erkanli, Victoria J. Hill, W. Paul Bissett, Richard C. Zimmerman, Jiang Li, Charles R. Bostater Jr. (Ed.), Stelios P. Mertikas (Ed.), Xavier Neyt (Ed.) Jan 2014

Detection Of Seagrass Scars Using Sparse Coding And Morphological Filter, Ender Oguslu, Sertan Erkanli, Victoria J. Hill, W. Paul Bissett, Richard C. Zimmerman, Jiang Li, Charles R. Bostater Jr. (Ed.), Stelios P. Mertikas (Ed.), Xavier Neyt (Ed.)

OES Faculty Publications

We present a two-step algorithm for the detection of seafloor propeller seagrass scars in shallow water using panchromatic images. The first step is to classify image pixels into scar and non-scar categories based on a sparse coding algorithm. The first step produces an initial scar map in which false positive scar pixels may be present. In the second step, local orientation of each detected scar pixel is computed using the morphological directional profile, which is defined as outputs of a directional filter with a varying orientation parameter. The profile is then utilized to eliminate false positives and generate the final …

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Reproductive Phase Determination In Male Meagre (Argyrosomus Regius, Sciaenidae): Testis Development And Histologic Corroboration Of A Gross Anatomical Scale, Nuno Prista, Leonel Gordo, José Lino Costa, Maria José Costa, Cynthia Jones Jan 2014

Reproductive Phase Determination In Male Meagre (Argyrosomus Regius, Sciaenidae): Testis Development And Histologic Corroboration Of A Gross Anatomical Scale, Nuno Prista, Leonel Gordo, José Lino Costa, Maria José Costa, Cynthia Jones

OES Faculty Publications

Reproductive stage determination of male gonads has received sparse attention in fish biology literature with few studies detailing the building of gross anatomical- and histologic scales. The meagre (Argyrosomus regius) is one of the world's largest sciaenids and supports a significant regional fishery in European and North African waters whose reproductive patterns are yet to be fully investigated. In the present study, we derive a macroscopic grading system for meagre testis using semi-quantitative graphs that feature the testis variability along the species size range and time of the year. We then describe the histological stages and reproductive phases of male …

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Developing Important Marine Mammal Area Criteria: Learning From Ecologically Or Biologically Significant Areas And Key Biodiversity Areas, Collenn M. Corrigan, Jeff A. Ardron, Mia T. Comeros-Raynal, Erich Hoyt, Giuseppe Notarbartolo Di Sciara, Kent E. Carpenter Jan 2014

Developing Important Marine Mammal Area Criteria: Learning From Ecologically Or Biologically Significant Areas And Key Biodiversity Areas, Collenn M. Corrigan, Jeff A. Ardron, Mia T. Comeros-Raynal, Erich Hoyt, Giuseppe Notarbartolo Di Sciara, Kent E. Carpenter

Biological Sciences Faculty Publications

1. This paper explores how criteria to identify important marine mammal areas (IMMAs) could be developed, and nested in existing global criteria. This process would consider 134 species of marine mammals. 2. Particular attention is given to two suites of global criteria to identify areas important for the persistence of marine biodiversity: Ecologically or Biologically Significant Areas (EBSAs) developed through the Convention on Biological Diversity (CBD), and Key Biodiversity Areas (KBAs) in revision through the International Union for the Conservation of Nature (IUCN). They are seen as mutually complementary in the development of IMMAs. 3. The specificities necessary for identifying …

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Effects Of Predation Upon The Long-Spined Sea Urchin Diadema Antillarum By The Spotted Spiny Lobster Panulirus Guttatus, Meredith D. Kintzing, Mark J. Butler Iv Jan 2014

Effects Of Predation Upon The Long-Spined Sea Urchin Diadema Antillarum By The Spotted Spiny Lobster Panulirus Guttatus, Meredith D. Kintzing, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sea urchins, important herbivores in marine ecosystems, are strongly impacted by both the direct and indirect effects of predation, and the long-spined sea urchin Diadema antillarum is no exception. Once abundant on Caribbean coral reefs, D. antillarum populations were decimated by disease in the early 1980s, and only where their natural predators have been over-fished has D. antillarum recovery been observed. Spiny lobsters (Palinuridae) are predators of sea urchins, and although there are several species of spiny lobster in the Caribbean, only the spotted spiny lobster Panulirus guttatus is restricted to coral reefs where D. antillarum dwells. We investigated the …

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Design And Study Of The Efflux Function Of The Egfp Fused Mexab-Oprm Membrane Transporter In Pseudomonas Aeruginosa Using Spectroscopy, Feng Ding, Kerry J. Lee, Ardeschir Vahedi-Faridi, Hiroshi Yoneyama, Christopher J. Osgood, Xiao-Hong Nancy Xu Jan 2014

Design And Study Of The Efflux Function Of The Egfp Fused Mexab-Oprm Membrane Transporter In Pseudomonas Aeruginosa Using Spectroscopy, Feng Ding, Kerry J. Lee, Ardeschir Vahedi-Faridi, Hiroshi Yoneyama, Christopher J. Osgood, Xiao-Hong Nancy Xu

Biological Sciences Faculty Publications

Multidrug membrane transporters (efflux pumps) can selectively extrude a variety of structurally and functionally diverse substrates (e.g., chemotoxics, antibiotics), leading to multidrug resistance (MDR) and ineffective treatment of a wide variety of diseases. In this study, we have designed and constructed a fusion gene (egfp-mexB) of N-terminal mexB with C-terminal egfp, inserted it into a plasmid vector (pMMB67EH), and successfully expressed it in the Δ MexB (MexB deletion) strain of Pseudomonas aeruginosato create a new strain that expresses MexA-(EGFP-MexB)-OprM. We characterized the fusion gene using gel electrophoresis and DNA sequencing, and determined its expression in live …

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