Physical Sciences and Mathematics Commons^™

Bioinformatics, Thermodynamics And Kinetics Analysis Of An All Alpha Helical Protein With A Gree-Key Topology, Hai Li

Chemistry & Biochemistry Theses & Dissertations

Computational and experimental studies focusing on the role of conserved residues for folding and stability is an active and promising area of research. To further expand our understanding we present the results of a bioinformatics analysis of the death domain superfamily. The death domain superfamily fold consists of six α-helices arranged in a Greek-key topology, which is shared by the all β-sheet immunoglobulin and mixed α/β-plait superfamilies. Our sequence and structural studies have identified a group of conserved hydrophobic residues and corresponding long-range interactions, which we propose are important in the formation and stabilization of the hydrophobic core and native …

Triple Coincidence Beam Spin Asymmetry Measurements In Deeply Virtual Compton Scattering, Mustafa Canan

Physics Theses & Dissertations

The Generalized Parton Distributions (GPDs) provides hitherto the most complete information about the quark structure of hadron. GPDs are accessible through hard-exclusive reactions, among which Deeply Virtual Compton Scattering (DVCS) is the cleanest reaction. A dedicated DVCS experiment on Hydrogen (E00-110) ran in the Hall A at Jefferson Laboratory in Fall 2004. I present here Beam Spin Asymmetry (BSA) results for the ep → epγ reaction studied in the E00-110 experiment with fully exclusive triple coincidence H(e, e'γp ) detection. I present a re-calibration of the electromagnetic calorimeter used to detect the high energy photon. This calibration …

An Extensible Mathematical Model Of Glucose Metabolism, Caleb L. Adams

Mathematics & Statistics Theses & Dissertations

The American Diabetes Association reports that diabetes is the fifth leading cause of death by disease in the United States. An estimated 23.6 million individuals, or seven percent of the population, have diabetes. Nearly one-third are unaware that they have the disease. The total of the direct and indirect medical costs associated with diabetes in 2007 was projected to be $174 billion, or approximately one out of every ten health care dollars.

One must understand the glucose regulatory system of the healthy body to understand diabetes. Blood glucose concentration returns to a constant level after eating and is maintained during …

A Three Dimensional Green's Function Solution Technique For The Transport Of Heavy Ions In Laboratory And Space, Candice Rockell Gerstner

Mathematics & Statistics Theses & Dissertations

In the future, astronauts will be sent into space for longer durations of time compared to previous missions. The increased risk of exposure to ionizing radiation, such as Galactic Cosmic Rays and Solar Particle Events, is of great concern. Consequently, steps must be taken to ensure astronaut safety by providing adequate shielding. The shielding and exposure of space travelers is controlled by the transport properties of the radiation through the spacecraft, its onboard systems and the bodies of the individuals themselves. Meeting the challenge of future space programs will therefore require accurate and efficient methods for performing radiation transport calculations …

A Least Squares Closure Approximation For Liquid Crystalline Polymers, Traci Ann Sievenpiper

Mathematics & Statistics Theses & Dissertations

An introduction to existing closure schemes for the Doi-Hess kinetic theory of liquid crystalline polymers is provided. A new closure scheme is devised based on a least squares fit of a linear combination of the Doi, Tsuji-Rey, Hinch-Leal I, and Hinch-Leal II closure schemes. The orientation tensor and rate-of-strain tensor are fit separately using data generated from the kinetic solution of the Smoluchowski equation. The known behavior of the kinetic solution and existing closure schemes at equilibrium is compared with that of the new closure scheme. The performance of the proposed closure scheme in simple shear flow for a variety …

Compensation Techniques In Accelerator Physics, Hisham Kamal Sayed

Physics Theses & Dissertations

Accelerator physics is one of the most diverse multidisciplinary fields of physics, wherein the dynamics of particle beams is studied. It takes more than the understanding of basic electromagnetic interactions to be able to predict the beam dynamics, and to be able to develop new techniques to produce, maintain and deliver high quality beams for different applications. In this work, some basic theory regarding particle beam dynamics in accelerators will be presented. This basic theory, along with applying state of the art techniques in beam dynamics will be used in this dissertation to study and solve accelerator physics problems. Two …

Incorporating Physical Fitness Through Rushing Can Significantly Affect Tactical Infantry Simulation Results, Elaine Marie Smith Blount

Computational Modeling & Simulation Engineering Theses & Dissertations

Physical fitness is accepted as an influence on the outcome on the battlefield; yet, research indicates that it has not been incorporated into tactical infantry simulations. Including physical capabilities may have a significant impact upon the results of a tactical simulation. Several battlefield tasks were reviewed, and rushing was selected to implement in tactical infantry simulations. A preliminary spreadsheet model was created that indicated rushing velocity would impact a tactical simulation. Two tactical infantry simulations were created: a helicopter extraction scenario where 13 soldiers rushed to extraction site while two enemies were shooting and a rushing scenario that consisted of …

Adding Executable Context To Executable Architectures: Enabling An Executable Context Simulation Framework (Ecsf), Johnny J. Garcia

Computational Modeling & Simulation Engineering Theses & Dissertations

A system that does not stand alone is represented by a complex entity of component combinations that interact with each other to execute a function. In today's interconnected world, systems integrate with other systems - called a system-of-systems infrastructure: a network of interrelated systems that can often exhibit both predictable and unpredictable behavior. The current state-of-the-art evaluation process of these system-of-systems and their community of practitioners in the academic community are limited to static methods focused on defining who is doing what and where. However, to answer the questions of why and how a system operates within complex systems-of-systems interrelationships, …

Section Abstracts: Chemistry

Virginia Journal of Science

Abstracts of the Chemistry Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, University of Richmond, Richmond VA.

Section Abstracts: Environmenal Science

Virginia Journal of Science

Abstracts of the Environmental Sciences Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, University of Richmond, Richmond VA.

Preliminary Analysis Of An Agent-Based Model For A Tick-Borne Disease, Holly Gaff

Biological Sciences Faculty Publications

Ticks have a unique life history including a distinct set of life stages and a single blood meal per life stage. This makes tick-host interactions more complex from a mathematical perspective. In addition, any model of these interactions must involve a significant degree of stochasticity on the individual tick level. In an attempt to quantify these relationships, I have developed an individual-based model of the interactions between ticks and their hosts as well as the transmission of tick-borne disease between the two populations. The results from this model are compared with those from previously published differential equation based population models. …

Random Keys Genetic Algorithms Scheduling And Rescheduling Systems For Common Production Systems, Elkin Rodriguez-Velasquez

Engineering Management & Systems Engineering Theses & Dissertations

The majority of scheduling research deals with problems in specific production environments with specific objective functions. However, in many cases, more than one problem type and/or objective function exists, resulting in the need for a more generic and flexible system to generate schedules. Furthermore, most of the published scheduling research focuses on creating an optimal or near optimal initial schedule during the planning phase. However, after production processes start, circumstances like machine breakdowns, urgent jobs, and other unplanned events may render the schedule suboptimal, obsolete or even infeasible resulting in a "rescheduling" problem, which is typically also addressed for a …

Examination Timetabling With Mathematical Programming An Application In Turkish Air Force Academy, Emrah Koksalmis

Engineering Management & Systems Engineering Theses & Dissertations

The focus of this thesis is the educational timetabling problem, which is a very challenging problem to solve especially with a high number of the departments, branches, classes, and students. Due to the large scale of educational timetabling problems and preferences of the stakeholders, it is almost impossible to form a general model that solves all of the timetabling problems in the literature. This resulted in the need to develop and employ specific models for specific institutions.

The purpose of this study is to develop a mathematical programming model that solves the examination timetabling problem in Turkish Air Force Academy …

Design And Demonstration Of A Miniature Lidar System For Rover Applications, Benjamin Robinson

Electrical & Computer Engineering Theses & Dissertations

Public awareness of harmful human environmental effects such as global warming has increased greatly in recent years and researchers have increased their efforts in gaining more knowledge about the Earth's atmosphere. Natural and man-made processes pose threats lo the environment and human life, so knowledge of all atmospheric processes is necessary. Ozone and aerosols are important factors in many atmospheric processes and active remote sensing techniques provide a way lo analyze their quantity and distribution.

A compact ground-based lidar system for a robotic platform meant for atmospheric aerosol measurements was designed, tested, and evaluated. The system will eventually be deployed …

Performance Analysis For Wimax Wireless Systems With Multiple Receive Antennas, Selcuk Taskin

Electrical & Computer Engineering Theses & Dissertations

Broadband wireless access has become the best way to meet the growing demand for fast Internet connections. WiMAX is one of the most promising broadband access technologies that allows fast deployment as well as low maintenance costs. WiMAX allows efficient use available bandwidth by using orthogonal frequency division multiplexing (OFDM) which is an efficient multi-carrier modulation technique. Diversity is a method for improving the reliability of a signal in fading environments by using two or more communication channels and is usually achieved by multiple antenna techniques.

In this thesis, receiver side diversity combining methods are studied and the performance of …

Learning Local Features Using Boosted Trees For Face Recognition, Rajkiran Gottumukkal

Electrical & Computer Engineering Theses & Dissertations

Face recognition is fundamental to a number of significant applications that include but not limited to video surveillance and content based image retrieval. Some of the challenges which make this task difficult are variations in faces due to changes in pose, illumination and deformation. This dissertation proposes a face recognition system to overcome these difficulties. We propose methods for different stages of face recognition which will make the system more robust to these variations. We propose a novel method to perform skin segmentation which is fast and able to perform well under different illumination conditions. We also propose a method …

Fusion Of Visual And Thermal Images Using Genetic Algorithms, Sertan Erkanli

Electrical & Computer Engineering Theses & Dissertations

Demands for reliable person identification systems have increased significantly due to highly security risks in our daily life. Recently, person identification systems are built upon the biometrics techniques such as face recognition. Although face recognition systems have reached a certain level of maturity, their accomplishments in practical applications are restricted by some challenges, such as illumination variations. Current visual face recognition systems perform relatively well under controlled illumination conditions while thermal face recognition systems are more advantageous for detecting disguised faces or when there is no illumination control. A hybrid system utilizing both visual and thermal images for face recognition …

Characterizations Of Atmospheric Pressure Low Temperature Plasma Jets And Their Applications, Erdinc Karakas

Electrical & Computer Engineering Theses & Dissertations

Atmospheric pressure low temperature plasma jets (APLTPJs) driven by short pulses have recently received great attention because of their potential in biomedical and environmental applications. This potential is due to their user-friendly features, such as low temperature, low risk of arcing, operation at atmospheric pressure, easy handheld operation, and low concentration of ozone generation. Recent experimental observations indicate that an ionization wave exists and propagates along the plasma jet. The plasma jet created by this ionization wave is not a continuous medium but rather consists of a bullet-like-structure known as "Plasma Bullet". More interestingly, these plasma bullets actually have a …

Unmanned Aerial Vehicles Collision Avoidance From Moving Obstacles, Atila Ozdemir

Electrical & Computer Engineering Theses & Dissertations

The usage of the unmanned aerial vehicles (UAV) is becoming more diverse day by day in both military and civil applications. Specifically in military applications, they are becoming a "must-have" component in every arsenal. Low cost, and especially the importance of human life, makes these vehicles desired in any military situation. But in order to take advantage of the UAVs, these vehicles should be able to navigate safely and not collide with other air vehicles, especially ones that are manned and carry personnel. As a result, the importance of a collision avoidance system of the UA V arises and begins …

Epistemic Strategies For Solving Two-Dimensional Physics Problems, Mary Elyse Hing-Hickman

Physics Theses & Dissertations

An epistemic strategy is one in which a person takes a piece of knowledge and uses it to create new knowledge. Students in algebra and calculus based physics courses use epistemic strategies to solve physics problems. It is important to map how students use these epistemic strategies to solve physics problems in order to provide insight into the problem solving process.

In this thesis three questions were addressed: (1) What epistemic strategies do students use when solving two-dimensional physics problems that require vector algebra? (2) Do vector preconceptions in kinematics and Newtonian mechanics hinder a student's ability to apply the …

Ultrafast High-Energy Electron Diffraction Study Of Photoexcited Bismuth Nanoclusters By Femtosecond Laser Pulses, Ahmed R. Esmail

Electrical & Computer Engineering Theses & Dissertations

The advancement in ultrafast electron crystallography (UEC) over the past few decades facilitated the study of structural dynamics in all phases of matter induced by femtosecond laser pulses. This technique became very powerful when the spatial resolution was combined with the temporal resolution, and succeeded in studying chemical reactions by ultrafast electron diffraction, bulk crystal phonons and melting by X-ray diffraction.

In this dissertation, I demonstrate the uniqueness of UEC and its potential in monitoring in real time the structural dynamics of bismuth (Bi) nanoclusters and islands induced by femtosecond laser pulses. Our approach to accomplish this task includes building …

A Probabilistic Analysis Of Misparking In Reservation Based Parking Garages, Vikas G. Ashok

Computer Science Theses & Dissertations

Parking in major cities is an expensive and annoying affair, the reason ascribed to the limited availability of parking space. Modern parking garages provide parking reservation facility, thereby ensuring availability to prospective customers. Misparking in such reservation based parking garages creates confusion and aggravates driver frustration. The general conception about misparking is that it tends to completely cripple the normal functioning of the system leading to chaos and confusion. A single mispark tends to have a ripple effect and therefore spawns a chain of misparks. The chain terminates when the last mispark occurs at the parking slot reserved by the …

Solving The Vehicle Re-Identification Problem By Using Neural Networks, Tanweer Rashid

Computational Modeling & Simulation Engineering Theses & Dissertations

Vehicle re-identification is the process by which vehicle attributes measured at one point on a road network are compared to vehicle attributes measured at another point in an effort to match vehicles without using any unique identifiers such as license plate numbers. A match is made if the two measurements are estimated to belong to the same vehicle. Vehicle attributes can be sensor readings such as loop induction signatures, or they can also be actual vehicle characteristics such as length, weight, number of axles, etc. This research makes use of vehicle length, travel time, axle spacing and axle weights for …

A Novel Pulsed Corona Discharge Reactor Based On Surface Streamers For No Conversion From N2-O2 Mixture Gases, M. A. Malik, Karl H. Schoenbach

Bioelectrics Publications

A novel pulsed corona discharge reactor is described which utilizes surface-plasma along insulating surfaces. The electrodes are comprised of a stainless steel wire anode of 150 µm diameter stretched along the surface of a glass sheet and two parallel aluminum strips as cathodes. An eight-stage Marx bank, which provides 60 ns, 40-45 kV monopolar pulses, was used to produce the surface streamers in nitrogen-oxygen mixtures at atmospheric pressure. With increasing oxygen content, the energy efficiency for NO2 and O3 synthesis was found to increase. The energy efficiency is almost the same for the surface-plasma and volume-plasma. However, the surface-plasma was …

Analysis Of Interband, Intraband, And Plasmon Polariton Transitions In Silver Nanoparticle Films Via In Situ Real-Time Spectroscopic Ellipsometry, S. A. Little, R. W. Collins, S. Marsillac

Electrical & Computer Engineering Faculty Publications

The dielectric function of Ag nanoparticle films, deduced from an analysis of in situ real-time spectroscopic ellipsometry (RTSE) measurements, is found to evolve with time during deposition in close consistency with the film structure, deduced in the same RTSE analysis. In the nucleation regime, the intraband dielectric function component is absent and plasmon polariton behavior dominates. Only at nuclei contact, does the intraband amplitude appear, increasing above zero. Both intraband and plasmon amplitudes coexist during surface smoothening associated with coalescence. The intraband relaxation time increases rapidly after surface smoothening is complete, also in consistency with the thin film structural evolution.

Editorial-The 2nd International Workshop On Modeling The Ocean (Iwmo-2010), Tal Ezer, Lie-Yauw Oey, Huijie Xue, Xiao Hua Wang

CCPO Publications

The formation of the International Workshop on Modeling the Ocean (IWMO) in 2009 has been motivated by the rapid growth in ocean modeling research around the world. In particular, the spread of ocean modeling research in Asia during recent years and the establishment of many international collaborative modeling projects led to the first meeting, IWMO-2009, which was held in Taipei, Taiwan, 23–26 February 2009 (see the two special issues resulted from this meeting: Oey et al. 2010a, b). The second meeting (IWMO-2010; http://www.ccpo.odu.edu/∼tezer/ IWMO_2010/) was hosted by the Center for Coastal Physical Oceanography at Old Dominion University in Norfolk, VA, …

Mellin Representation Of The Graviton Bulk-To-Bulk Propagator In Ads Space, Ian Balitsky

Physics Faculty Publications

A Mellin-type representation of the graviton bulk-to-bulk propagator from E. D’Hoker, D. Z. Freedman, S. D. Mathur, A. Matusis, and L. Rastelli [Nucl. Phys. B562, 330 (1999)] in terms of the integral over the product of bulk-to-boundary propagators is derived.

Evolution Of Conformal Color Dipoles And High Energy Amplitudes In 𝒩 = 4 Sym, Ian Balitsky

Physics Faculty Publications

The high-energy behavior of the 𝒩 = 4 SYM amplitudes in the Regge limit can be calculated order by order in perturbation theory using the high-energy operator expansion in Wilson lines. At large N_c, a typical four-point amplitude is determined by a single BFKL pomeron. The conformal structure of the four-point amplitude is fixed in terms of two functions: pomeron intercept and the coefficient function in front of the pomeron (the product of two residues). The pomeron intercept is universal while the coefficient function depends on the correlator in question. The intercept is known in the first two …

Design Of Superconducting Parallel-Bar Deflecting/Crabbing Cavities With Improved Properties, Jean R. Delayen, Subashini De Silva

Physics Faculty Publications

The superconducting parallel-bar cavity is a deflecting/crabbing cavity with attractive properties, compared to other conventional designs, that is being considered for a number of applications. All designs to-date have been based on straight loading elements and rectangular outer conductors. We present new designs of parallel-bar cavities using curved loading elements and circular or elliptical outer conductors, with significantly improved properties such as reduced surface fields and wider higher-order mode separation.

Crab Crossing Consideration For Meic, S. Ahmed, Y. Derbenev, Geoffrey A. Krafft, Y. Zhang, Subashini De Silva, Jean R. Delayen, A. Castilla

Physics Faculty Publications

Crab crossing of colliding electron and ion beams is essential for accommodating the high bunch repetition frequency in the conceptual design of MEIC – a high luminosity polarized electron-ion collider at Jefferson Lab. The scheme eliminates parasitic beam-beam interactions and avoids luminosity reduction by restoring head-on collisions at interaction points. In this paper, we report the possible crabbing schemes and requirements for both electron and proton beams.