Physical Sciences and Mathematics Commons^™

Pcr And Fish Detection Extends The Range Of Pfiesteria Piscicida In Estuarine Waters, P. A. Rublee, J. Kempton, E. Schaefer, J.M. Burkholder, H. B. Glasgow Jr., David Oldach

Virginia Journal of Science

PCR and fluorescent in situ hybridization probes were used to assay for the presence of the dinoflagellate Pfiesteria piscicida in 170 estuarine water samples collected from New York to northern Florida. 20% of samples tested positive for the presence of P. piscicida, including sites where fish kills due to Pfiesteria have occurred and sites where there was no historical evidence of such events. The results extend the known range of P. piscicida northward to Long Island, New York. The results also suggest that P. piscicida is common, and normally benign, inhabitatant of estuarine waters of the eastern US.

Resource Allocation And Sucrose Mobilization In Light Limited Eelgrass Zostera Marina, Teresa Alcoverro, Richard C. Zimmerman, Donald G. Kohrs, Randall S. Alberte

OES Faculty Publications

This study evaluated the ability of Zostera marina L. (eelgrass) to balance the daily photosynthetic deficit by mobilization of carbon reserves stored in below-ground tissues during a period of extreme winter light limitation. A quantitative understanding of the mobilization process and its limitations is essential to the development of robust models predicting minimum light levels required to maintain healthy seagrass populations. Plants were grown in running seawater tanks under 2 light regimes. One treatment was provided with 2 h irradiance-saturated photosynthesis (H_sat) to produce severe Light Limitation, while control plants were grown under 7 h H_sat, …

Reconfigurable Shift Switching Parallel Comparators, R. Lin, S. Olariu

Computer Science Faculty Publications

We present novel asynchronous VLSI comparator schemes which are based on recently proposed reconfigurable shift switch logic and the traditional (precharged) CMOS domino logic. The schemes always produce a semaphore as a by-product of the process to indicate the end of domino process, which requires no additional delay and a minimal number of additional devices. For a large percentage of inputs the computations are much faster than traditional synchronous comparators due to the full utilization of the inherent speed of the circuits. Also the schemes are simple, area compact and stable.

Reviewing Software As A Means Of Enhancing Instruction, Marcus D. Childress, Guang-Lea Lee, Gregory P. Sherman

Teaching & Learning Faculty Publications

A software review procedure developed by the authors is described. The procedure centers around a form that extends the functionality of traditional software evaluation forms by enhancing the use of the computer software in the early childhood classroom. The form encourages teachers to discover ways a piece of software can be integrated across disciplines and used as an anchor for instruction. Users of the review form are also encouraged to examine ways the software motivates the user to remain engaged in its use. The majority of the review form emphasizes the important role of the teacher in identifying outcomes or …

Comparative Study Of Selenium Requirements Of Three Phytoplankton Species: Gymnodinium Catenatum, Alexandrium Minutum (Dinophyta) And Chaetoceros Cf. Tenuissimus (Bacillariophyta, Martina A. Doblin, Susan I. Blackburn, Gustaaf M. Hallegraeff

OES Faculty Publications

This study investigated the selenium (Se) requirements of three phytoplankton species which commonly bloom in southern Australian estuaries. The present study showed that the toxic dinoflagellate Gymnodinium catenatum Graham had an obligate requirement for Se (IV) in culture. After two transfers (~ 4 weeks ≈ 7 generations) in Se-deficient seawater medium, this phytoplankton species exhibited a decline in growth rate (25%) and biomass yield (90%), while complete cessation of cell division occurred under prolonged (8 weeks ≈ 12 generations) Se starvation. Addition of 10^-9-10^-7 M H₂SeO₃ to nutrient-enriched seawater medium resulted in increased G.catenatum …

Smart Objects, Dumb Archives: A User-Centric, Layered Digital Library Framework, Kurt Maly, Michael L. Nelson, Mohammad Zubair

Computer Science Faculty Publications

Discusses digital libraries, interoperability, and interfaces to access them, and proposes one universal protocol for communication for simple archives based on the hypertext transfer protocol (http). Describes the creation of a special class of digital objects called buckets, archives based on a NASA collection, and a set of digital library services. (Author/LRW)

Compute As Fast As The Engineers Can Think! Utrafast Computing Team Final Report, Robert T. Biedron, P. Mehrotra, Michael L. Nelson, M. L. Preston, J. J. Rehder, J. L. Rogersm, D. H. Rudy, J. Sobieski, O. O. Storaasli

Computer Science Faculty Publications

This report documents findings and recommendations by the Ultrafast Computing Team (UCT). In the period 10-12/98, UCT reviewed design case scenarios for a supersonic transport and a reusable launch vehicle to derive computing requirements necessary for support of a design process with efficiency so radically improved that human thought rather than the computer paces the process. Assessment of the present computing capability against the above requirements indicated a need for further improvement in computing speed by several orders of magnitude to reduce time to solution from tens of hours to seconds in major applications. Evaluation of the trends in computer …

A Digital Library For The National Advisory Committee For Aeronautics, Michael L. Nelson

Computer Science Faculty Publications

We describe the digital library (DL) for the National Advisory Committee for Aeronautics (NACA), the NACA Technical Report Server (NACATRS). The predecessor organization for the National Aeronautics and Space Administration (NASA), NACA existed from 1915 until 1958. The primary manifestation of NACA's research was the NACA report series. We describe the process of converting this collection of reports to digital format and making it available on the World Wide Web (WWW) and is a node in the NASA Technical Report Server (NTRS). We describe the current state of the project, the resulting DL technology developed from the project, and the …

On The P-Connectedness Of Graphs – A Survey, Luitpold Babel, Stephan Olariu

Computer Science Faculty Publications

A graph is said to be p-connected if for every partition of its vertices into two non-empty, disjoint, sets some chordless path with three edges contains vertices from both sets in the partition. As it turns out, p-connectedness generalizes the usual connectedness of graphs and leads, in a natural way, to a unique tree representation for arbitrary graphs.

This paper reviews old and new results, both structural and algorithmic, about p-connectedness along with applications to various graph decompositions.

High-Performance Bus-Based Architectures - Guest Editorial, Stephan Olariu, Rong Lin

Computer Science Faculty Publications

(First paragrapg) This special issue of VLSI Design presents a collection of seven papers selected out of more than 35 submissions received following the Call for Papers. Each submission was sent to three referees, all of them experts in the area of bus-based architectures. The result is impressive. The papers featured in this Special Issue cover a wide range of topics from sorting to string matching, to load balancing, to simulation, matrix operations, to robotics, to the design of high-performance scalable architectures.

A Two-Dimensional Analytic Tidal Model For A Narrow Estuary Of Arbitrary Lateral Depth Variation: The Intratidal Motion, Chunyan Li, Arnoldo Valle-Levinson

CCPO Publications

An innovative method is introduced to solve a two-dimensional, depth-averaged analytic model for narrow estuaries or tidal channels with arbitrary lateral depth variations. The solution is valid if the lateral variation of the amplitude of tidal elevation (\Delta a\) is small, i.e., \Delta a\ much less than a, where a is the amplitude of the tidal elevation. This assumption is supported by a 60-day observation of elevation in the James River Estuary using pressure sensors at both sides of a cross section of the estuary. The error introduced by the solution is of the order of \Delta a\/a, which has …

Warm Water Formation And Escape In The Upper Tropical Atlantic Ocean - 1. A Literature Review, Sang-Ki Lee, G. T. Csanady

CCPO Publications

We review current understanding of the warm water formation and escape process in the tropical Atlantic Ocean and point out the physical aspects of the process not yet fully explored. From this review, we found a need for a simple model capable of describing the first-order heat and mass balance in the tropical Atlantic Ocean. This line of work is continued in part 2 [Lee and Csanady, this issue]. Copyright 1999 by the American Geophysical Union.

Analyzing Mean Transport Equations Of Turbulence And Linear Disturbances In Decaying Flows, W. D. Thacker, T. B. Gatski, C. E. Grosch

CCPO Publications

The decay of laminar disturbances and turbulence in mean shear-free flows is studied. In laminar flows, such disturbances are linear superpositions of modes governed by the Orr-Sommerfeld equation. In turbulent flows, disturbances are described through transport equations for representative mean quantities. The link between a description based on a deterministic evolution equation and a probability-based mean transport equation is established. Because an uncertainty in initial conditions exists in the laminar as well as the turbulent regime, a probability distribution must be defined even in the laminar case. Using this probability distribution, it is shown that the exponential decay of the …

Polynomial Construction Of Complex Hadamard Matrices With Cyclic Core, C. H. Cooke, I. Heng

Mathematics & Statistics Faculty Publications

Conditions are given which are necessary and sufficient to ensure invariance of an M-sequence under periodic rearrangement. In conjunction with a certain uniformity property of polynomial coefficients, these conditions yield a simple method by which complex Hadamard matrices with cyclic core can be constructed. In such cases, a real p-ary linear cyclic error correcting code may be associated with the complex Hadamard matrix.

Algorithms For The Numerical Solution Of A Finite-Part Integral Equation, J. Tweed, R. St. John, M. H. Dunn

Mathematics & Statistics Faculty Publications

The authors investigate a hypersingular integral equation which arises in the study of acoustic wave scattering by moving objects. A Galerkin method and two collocation methods are presented for solving the problem numerically. These numerical techniques are compared and contrasted in three test problems.

Time-Resolved Reflection High-Energy Electron Diffraction Study Of The Ge(111)-C(2×8)-(1×1) Phase Transition, Xinglin Zeng, Bo Lin, Ibrahim El-Kholy, Hani E. Elsayed-Ali

Electrical & Computer Engineering Faculty Publications

The dynamics of the Ge(111)-c(2×8)-(1×1) phase transition is investigated by 100-ps time-resolved reflection high-energy electron diffraction. A laser pulse heats the surface while a synchronized electron pulse is used to obtain the surface diffraction pattern. Slow heating shows that the adatoms in Ge(111)-c(2×8) start to disorder at ∼510 K and are converted to a disordered adatom arrangement at 573 K. For heating with 100-ps laser pulses, the Ge(111)-c(2×8) reconstructed adatom arrangement starts to disorder at 584±16K, well above the onset temperature of ∼510 K for the disordering of Ge(111)-c(2×8) observed for slow …

Efficient Dynamic Unstructured Methods And Applications For Transonic Flows And Hypersonic Stage Separation, Xiaobing Luo

Mechanical & Aerospace Engineering Theses & Dissertations

Relative-moving boundary problems have a wide variety of applications. They appear in staging during a launch process, store separation from a military aircraft, rotor-stator interaction in turbomachinery, and dynamic aeroelasticity.

The dynamic unstructured technology (DUT) is potentially a strong approach to simulate unsteady flows around relative-moving bodies, by solving time-dependent governing equations. The dual-time stepping scheme is implemented to improve its efficiency while not compromising the accuracy of solutions. The validation of the implicit scheme is performed on a pitching NACA0012 airfoil and a rectangular wing with low reduced frequencies in transonic flows. All the matured accelerating techniques, including the …

Benchmarking Financial Operations Using The Premier Operations Outlook Database, Margaret M. Thompson

Community & Environmental Health Theses & Dissertations

Acute-care hospitals have come under increased pressure to reduce costs while increasing the quality of providing care. Historically, increasing costs of providing care has had the greatest impact on the reduction of operating margins necessary to expand capital and for repayment of debt. Facilities can benchmark internal historical data to identify areas where costs have increased and are able to explain the factors that contribute to the increases. One of the challenges facing hospitals in their efforts to reduce operating costs is how, what, and where, do they obtain comparative data to benchmark the cost of operating medical facility to …

Physical Control Of Biological Processes In The Central Equatorial Pacific: A Data Assimilative Modeling Study, Marjorie Anne Macwhorter Friedrichs

OES Theses and Dissertations

A five-component data assimilative ecosystem model is developed in order to investigate the effects of physical processes encompassing a wide range of space and time scales, on the lower trophic levels of the highly dynamic central equatorial Pacific (140°W). Many of the biological processes included in the ecosystem model respond to environmental fluctuations with time scales between one and ten days, which are not typically resolved by basin to global scale circulation models. Therefore, the ecosystem model is forced using daily observations from the TAO mooring array. Model simulations successfully reproduce data collected both during and after the 1991–92 El …

The Impacts Of External Nutrient Sources On Marine Phytoplankton In An Eastern Shore Sea-Side Estuary, Claudette Lajoie Jenkins

OES Theses and Dissertations

The Eastern Shore of Virginia (Greens Creek) as well as a large portion of the North Atlantic coastline is characterized by estuarine systems not dominated by large river systems. Instead, small freshwater creeks influence many coastal systems yet little information has been documented on their ecological significance. The focus of this research is to identify the biogeochemical and physical interactions within an estuarine water-column and understand the importance of freshwater sources in governing phytoplankton production. The hypothesis of this research is that increases in external nutrient loading into Greens Creek will not result in an increase in primary production. The …

Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis, William John Schulz Jr.

OES Theses and Dissertations

Rapid environmental assessment is conducted using disparate data sources in the northwestern Gulf of Mexico. An overview of significant physical features in the Gulf highlights the complexities of the large and meso-scale circulations. Spectral analysis of high resolution current meter and drifter data reveals the significant forcing features detectable by readily available observing techniques. These observations are combined with boundary data extracted from the U.S. Navy's Modular Ocean Data Assimilation System (MODAS) through Normal Mode Analysis (NMA). The NMA blending process is described, and surface maps of velocity and convergence are produced. Using statistical and qualitative techniques, the NMA generated …

A Coupled Bio-Optical And Mixed Layer Model For The Equatorial Pacific, James Vincent Koziana

OES Theses and Dissertations

A one dimensional coupled bio-optical and mixed layer model is developed and applied to problems involving the role of phytoplankton-induced turbidity (PIT) on the vertical structure and heating of the upper ocean in the Equatorial Pacific Ocean. The bio-optical and mixed layer model for optically pure sea water was forced with climatological environmental conditions to provide a reference simulation for 140°W in the eastern Equatorial Pacific Ocean. This reference simulation was used for comparison to other simulations which considered the effects of variations in wind stress and solar input for a homogeneous chlorophyll a profile and variations in the magnitude …

Surface Resistance Measurements Of Superconducting Niobium Samples With A Triaxial Cavity, Paul Martin Boccard

Physics Theses & Dissertations

This experimental study has revealed and investigated many of the physical issues that affect accurate measurement of the surface resistance for small samples consisting of superconducting niobium films on copper substrates. It is believed that this work provides the groundwork for future research directed towards solving this important problem. Accurate measurement of surface resistance for such samples is needed to allow the rapid evaluation and optimization of the deposition parameters necessary for manufacturing low-loss superconducting niobium films.

A superconducting niobium triaxial cavity was investigated to determine its suitability for measuring the residual surface resistance of copper samples that were sputter-coated …

Absorption Efficiencies And Biochemical Fractionation Of Assimilated Compounds In The Cold Water Appendicularian Oikopleura Vanhoeffeni, Alexander B. Bochdansky, Don Deibel, Richard B. Rivkin

OES Faculty Publications

Using Ge-68:C-14 dual-labeling, we investigated the absorption efficiency of diatom carbon for the cold water appendicularian Oikopleura vanhoeffeni. The absorption efficiency of bulk carbon (mean = 67%) was not influenced by body size or ingestion rate. For the first time for a pelagic tunicate, food and feces were fractionated into their major biochemical constituents (i.e., low-molecular-weight compounds, lipid, protein, and polysaccharide), allowing calculation of absorption efficiencies for each fraction. Low-molecular-weight compounds and proteins were preferentially absorbed over lipids and polysaccharides. However, predicted C:N ratios of the fecal pellets of O. vanhoeffeni were in the lower range of C:N ratios …

Accurate Classification Of Juvenile Weakfish Cynoscion Regalis To Estuarine Nursery Areas Based On Chemical Signatures In Otoliths, Simon R. Thorrold, Cynthia M. Jones, Peter K. Swart, Timothy E. Targett

OES Faculty Publications

We investigated the ability of trace element and isotopic signatures in otoliths to record the nursery areas of juvenile (young-of-the-year) weakfish Cynoscion regalis from the east coast of the USA. Juvenile C. regalis were captured with otter trawls at multiple sites in Doboy Sound (Georgia), Pamlico Sound (North Carolina), Chesapeake Bay (Virginia), Delaware Bay (Delaware) and Peconic Bay (New York), from July to September 1996. One sagittal otolith from each specimen was assayed for Mg/Ca, Mn/Ca, Sr/Ca and Ba/Ca ratios using inductively coupled plasma mass spectrometry (ICP-MS), while delta 13 C and delta 18 O values from the other sagittal …

Circulation, Vol. 6, No. 1, Center For Coastal Physical Oceanography, Old Dominion University

CCPO Circulation

Fall 1998 issue of CCPO Circulation featuring article "Renewed Effort by Mexican Oceanographers to Understand the Dynamics of Coastal Lagoons"

Chemical Modification Of Cvd Diamond Electrodes, Robert Matthew Johnson

Chemistry & Biochemistry Theses & Dissertations

The micro-array behavior of boron doped CVD diamond thin film electrodes has been studied in acetonitrile containing two redox couples. The analytical technique employed in these studies was cyclic voltammetry. One system is 0.4 mM ferrocene containing 0.1 M tetrabutylammonium hexafluorophosphate (TBAH). This reversible redox system is not only well-known, but also involves only one electron transfer with no breakage/formation of chemical bonds, thus making it a simple system for analysis. The second test is 0.8 mM cobaltocenium hexafluorophosphate, with 0.4 mM ferrocene as an internal standard. Unlike ferrocene, which is neutral initially, cobaltocenium is positively charged, and is reduced …

Variability Analysis Of Discrete Cosine Transform Coefficient (Dctc) Features For Speech Processing, Bingjun Dai

Electrical & Computer Engineering Theses & Dissertations

In this research, the variability of Discrete Cosine Transform Coefficient (DCTC) features was investigated. Additionally, a new pitch-synchronous processing method was explored to increase the stability of features and to reduce window effects when compared to the regular method. The noise sources that lead to feature variability were analyzed, and different smoothing methods were tested. It was found that longer frames, frequency warping, time smoothing of the log spectrum, and DCS level time smoothing, all help reduce DCTC variability and increase classification performance. The pitch­ synchronous method was implemented with Matlab. Important processing methods, including pitch period estimation, time­ domain …

Computer Simulations Of Electromigration Based On A Molecular Dynamics Approach, John Stephen Peake

Electrical & Computer Engineering Theses & Dissertations

Most research on electromigration has centered around macroscopic simulations of electromigration where a value for the diffusion coefficient was assumed to be spatially uniform throughout the material. The research in this thesis goes a step further and, through microscopic molecular dynamics computer simulations, calculates and updates the atomic drift velocity and atomic position as a function of time to analyze how various defects within the conductor affect these quantities. The simulations are carried out with defects in the form of dislocation half-planes placed in different locations within the simulation space. The atomic drift velocity and position changes derived from these …

Analytic Forms Of Bidirectional Reflectance Functions For Application To Earth Radiation Budget Studies, N. Manalo-Smith, G. L. Smith, S. N. Tiwari, W. F. Staylor

Mechanical & Aerospace Engineering Faculty Publications

Analytic expressions for the bidirectional reflectance functions are formulated and fit to the Earth Radiation Budget Experiment (ERBE) operational models, which were developed using Nimbus 7 ERB data. The analytic bidirectional reflectance distribution functions (BRDFs) are based on theoretical considerations and are functions of viewing geometry and scene type. The models consist of a Rayleigh scattering term and a term for scattering due to clouds and surface. The darkness of the ocean permits the empirical determination of the Rayleigh component of scattering from the atmosphere. The models have the advantage that they are smooth in terms of view and solar …