Physical Sciences and Mathematics Commons^™

Implementation Of A Sediment Transport Model For Ce-Qual-W2, Rachel Hanna

Civil and Environmental Engineering Master's Project Reports

The CE-QUAL-W2 model, developed by Portland State University, simulates water quality and flow. Recommendations to expand on this model and have it include sediment transport are implemented in this report. Existing one-, two-, and three-dimensional models are reviewed and assessed for their sediment transport methodology. A laterally (width) averaged sediment concentration model is developed as an Upwind Center Space Scheme using CE-QUAL-W2 data. The scheme includes a method to calculate scour for sediment concentration and results of the model are shown for a simulated branch of the Spokane River.

A Regression Approach For Estimation Of Anthropogenic Heat Flux Based On A Bottom-Up Air Pollutant Emission Database, Sanghyun Lee, Stuart A. Mckeen, David J. Sailor

Mechanical and Materials Engineering Faculty Publications and Presentations

A statistical regression method is presented for estimating hourly anthropogenic heat flux (AHF) using an anthropogenic pollutant emission inventory for use in mesoscale meteorological and air-quality modeling. Based on bottom-up AHF estimated from detailed energy consumption data and anthropogenic pollutant emissions of carbon monoxide (CO) and nitrogen oxides (NO_x) in the US National Emission Inventory year 2005 (NEI-2005), a robust regression relation between the AHF and the pollutant emissions is obtained for Houston. This relation is a combination of two power functions (Y = aX^b) relating CO and NO_x emissions to AHF, giving a determinant …

The Atmosphere Can Be A Source Of Certain Water Soluble Volatile Organic Compounds In Urban Streams, Scott J. Kenner, David A. Bender, James F. Pankow, John S. Zogorski

Chemistry Faculty Publications and Presentations

Surface water and air volatile organic compound (VOC) data from 10 U. S. Geological Survey monitoring sites were used to evaluate the potential for direct transport of VOCs from the atmosphere to urban streams. Analytical results of 87 VOC compounds were screened by evaluating the occurrence and detection levels in both water and air, and equilibrium concentrations in water (C-w(s)) based on the measured air concentrations. Four compounds (acetone, methyl tertiary butyl ether, toluene, and m- & p-xylene) were detected in more than 20% of water samples, in more than 10% of air samples, and more than 10% of detections …

Transients In The Synchronization Of Oscillator Arrays, Carlos E. Cantos, J. J. P. Veerman

Mathematics and Statistics Faculty Publications and Presentations

The purpose of this note is threefold. First we state a few conjectures that allow us to rigorously derive a theory which is asymptotic in N (the number of agents) that describes transients in large arrays of (identical) linear damped harmonic oscillators in R with completely decentralized nearest neighbor interaction. We then use the theory to establish that in a certain range of the parameters transients grow linearly in the number of agents (and faster outside that range). Finally, in the regime where this linear growth occurs we give the constant of proportionality as a function of the signal velocities …

Hyperspectral Measurements Of Wet, Dry And Saline Soils From The Mcmurdo Dry Valleys: Soil Moisture Properties From Remote Sensing, Joseph S. Levy, Anne Nolin, Andrew G. Fountain, James W. Head

Geology Faculty Publications and Presentations

Soil moisture is a spatially heterogeneous quantity in the McMurdo Dry Valleys of Antarctica that exerts a large influence on the biological community and on the thermal state of Dry Valleys permafrost. The goal of this project was to determine whether hyperspectral remote sensing techniques could be used to determine soil moisture conditions in the Dry Valleys. We measured the spectral reflectance factors of wetted soil samples from the Dry Valleys under natural light conditions and related diagnostic spectral features to surface layer soil moisture content. Diagnostic water absorption features in the spectra at 1.4 mu m and 1.9 mu …

Gps Constraints On The Mw = 7.5 Ometepec Earthquake Sequence, Southern Mexico: Coseismic And Post-Seismic Deformation, Shannon E. Graham, Charles Demets, Enrique Cabral-Cano, Vladimir Kostoglodov, Andrea Walpersdorf, Nathalie Cotte, Michael Brudzinski, Robert Mccaffrey, Luis Salazar-Tlaczani

Geology Faculty Publications and Presentations

We use continuous GPS measurements from 31 stations in southernMexico to model coseismic slip and post-seismic deformation from the 2012 March 20 Mw = 7.5 Ometepec earthquake, the first large thrust earthquake to occur below central Mexico during the modern GPS era. Coseismic offsets ranging from ∼280 mm near the epicentre to 5 mm or less at sites far from the epicentre are fit best by a rupture focused between ∼15 and 35 km depth, consistent with an independent seismological estimate. The corresponding geodetic moment of 1.4 × 10²⁰ N·m is within 10 per cent of two independent seismic …

Positional Control Of Plasmonic Fields And Electron Emission, Robert Campbell Word, Joseph P. Fitzgerald, Rolf Könenkamp

Physics Faculty Publications and Presentations

We report the positional control of plasmonic fields and electron emission in a continuous gap antenna structure of sub-micron size. We show experimentally that a nanoscale area of plasmon-enhanced electron emission can be motioned by changing the polarization of an exciting optical beam of 800 nm wavelength. Finite-difference calculations are presented to support the experiments and to show that the plasmon-enhanced electric field distribution of the antenna can be motioned precisely and predictively.

Secondary Organic Aerosol Formation And Organic Nitrate Yield From No3 Oxidation Of Biogenic Hydrocarbons, Juliane L. Fry, Danielle C. Draper, Kelley C. Barsanti, James N. Smith, John Ortega, Paul M. Winkler, Michael J. Lawler, Steven S. Brown, Peter M. Edwards, Ronald C. Cohen, Lance Lee

Civil and Environmental Engineering Faculty Publications and Presentations

The secondary organic aerosol (SOA) mass yields from NO3 oxidation of a series of biogenic volatile organic compounds (BVOCs), consisting of five monoterpenes and one sesquiterpene (α-pinene, β-pinene, Δ-3-carene, limonene, sabinene, and β-caryophyllene), were investigated in a series of continuous flow experiments in a 10 m3 indoor Teflon chamber. By making in situ measurements of the nitrate radical and employing a kinetics box model, we generate time-dependent yield curves as a function of reacted BVOC. SOA yields varied dramatically among the different BVOCs, from zero for α-pinene to 38−65% for Δ-3-carene and 86% for β-caryophyllene at mass loading of 10 …

Vibrational Modes In Acoustic Gallery Scanning Probe Microscopy, Hsien-Chih Hung, Andres H. La Rosa, Rodolfo Fernandez, Bret Comnes, Richard Nordstrom

Physics Faculty Publications and Presentations

A distinct characteristic in Acoustic Gallery Scanning Probe Microscopy (AG-SPM) constitutes the use of its supporting structural frame as an acoustic resonant cavity for monitoring the nanometer-sized amplitude of its stylus-probe. Although very straightforward in its implementation, its amplitude detection sensitivity could be improved by a more thorough understanding of its working principle mechanism, as well as by a more systematic procedure to attain a closer matching between one of the cavitys acoustic resonances and the probes natural frequency. Herein, a description of the working principle of the AG-SPM is attempted from a vibrationalmode analysis perspective, and a successful specific …

3d Systems' Technology Overview And New Applications In Manufacturing, Engineering, Science, And Education, Trevor Snyder, Mike Andrews, Mark M. Weislogel, Peter Moeck, Jennifer Stone-Sundberg, Derek Birkes, Madeline Paige Hoffert, Adam Lindeman, Jeff Morrill, Ondrej Fercak, Sasha Friedman, Jeff Gunderson, Anh Ha, Jack Mccollister, Yongkang Chen, John T. Geile, Andrew Paul Wollman, Babek Attari, Nathan Botnen, Vasant Vuppuluri, Jennifer Shim, Werner Kaminsky, Dustin Adams, John Graft

Physics Faculty Publications and Presentations

Since the inception of 3D printing, an evolutionary process has taken place in which specific user and customer needs have crossed paths with the capabilities of a growing number of machines to create value-added businesses. Even today, over 30 years later, the growth of 3D printing and its utilization for the good of society is often limited by the various users' understanding of the technology for their specific needs. This article presents an overview of current 3D printing technologies and shows numerous examples from a multitude of fields from manufacturing to education.

How Will Climate Change And Bioenergy Harvest Affect Carbon Storage In The Oregon Coast Range, Megan K. Creutzburg, Robert M. Scheller, Melissa S. Lucash, Stephen D. Leduc, Louisa B. Evers, Mark G. Johnson

Environmental Science and Management Faculty Publications and Presentations

This poster shows how the researchers used a simulation model to explore the impacts of varying scenarios of climate change and forest management on the ecosystem carbon.

Using Gist Features To Constrain Search In Object Detection, Joanna Browne Solmon

Dissertations and Theses

This thesis investigates the application of GIST features [13] to the problem of object detection in images. Object detection refers to locating instances of a given object category in an image. It is contrasted with object recognition, which simply decides whether an image contains an object, regardless of the object's location in the image.

In much of computer vision literature, object detection uses a "sliding window" approach to finding objects in an image. This requires moving various sizes of windows across an image and running a trained classifier on the visual features of each window. This brute force method can …

History And Dynamics Of Net Rotation Of The Mantle And Lithosphere, Maxwell L. Rudolph, Shijie Zhong

Geology Faculty Publications and Presentations

The net rotation of Earth’s lithosphere with respect to the underlying mantle is the longestwavelength component of toroidal flow in the mantle and is sensitive to both mantle buoyancy structure and lateral viscosity variations. The lithospheric net rotation in the geologic past implied by plate reconstructions using a hotspot reference frame for the past 100 Myr is up to five times greater than the presentday rate of lithospheric net rotation. We explore the role of lateral viscosity variations associated with subcontinental keels in producing the lithospheric net rotation for the geologic past and find that the introduction of subcontinental keels …

Predicted Effects Of Gypsy Moth Defoliation And Climate Change On Forest Carbon Dynamics In The New Jersey Pine Barrens, Alec M. Kretchun, Robert M. Scheller, Melissa S. Lucash, Kenneth L. Clark, John Hom, Steve Van Tuyl

Environmental Science and Management Faculty Publications and Presentations

Disturbance regimes within temperate forests can significantly impact carbon cycling. Additionally, projected climate change in combination with multiple, interacting disturbance effects may disrupt the capacity of forests to act as carbon sinks at large spatial and temporal scales. We used a spatially explicit forest succession and disturbance model, LANDIS-II, to model the effects of climate change, gypsy moth (Lymantria dispar L.) defoliation, and wildfire on the C dynamics of the forests of the New Jersey Pine Barrens over the next century. Climate scenarios were simulated using current climate conditions (baseline), as well as a high emissions scenario (HadCM3 A2 …

Investigating The Link Between Surface Water And Groundwater In The Tule Lake Subbasin, Oregon And California, Esther Maria Pischel

Dissertations and Theses

Water allocation in the upper Klamath Basin of Oregon and California has been challenging. Irrigators have increasingly turned to groundwater to make up for surface water shortages because of shifts in allocation toward in-stream flows for Endangered Species Act listed fishes. The largest increase in groundwater pumping has been in and around the Bureau of Reclamation's Klamath Irrigation Project, which includes the Tule Lake subbasin in the southern part of the upper Klamath Basin. Previous groundwater flow model simulations indicate that water level declines from pumping may result in decreased flow to agricultural drains in the Tule Lake subbasin. Agricultural …

An Analysis Of Vegetation Recovery Following Dam Removal At Hemlock Recreation Site, Washington, Greer Stewart Ramsey

Dissertations and Theses

Dam removals are becoming increasingly common as dams reach their life expectancy and face costly upgrades associated with relicensing. Though removal is often viewed as a success in terms of ecological restoration, it also represents a major disturbance to an area. Previous research has shown that native species do not survive as well at these disturbed sites, and invasive species often dominate. This study examines the vegetation response in the drained reservoir area after the removal of Hemlock Dam on Trout Creek, a tributary to the Wind River in southern Washington. Transects were established and quadrats were sampled to determine …

Automatic Calibration Of Water Quality And Hydrodynamic Model (Ce-Qual-W2), Nasim Shojaei

Dissertations and Theses

One of the most important purposes of surface water resource management is to develop predictive models to assist in identifying and evaluating operational and structural measures for improving water quality. To better understand the effects of external and internal nutrient and organic loading and the effects of reservoir operation, a model is often developed, calibrated, and used for sensitivity and management simulations. The importance of modeling and simulation in the scientific community has drawn interest towards methods for automated calibration. This study addresses using an automatic technique to calibrate the water quality model CE-QUAL-W2 (Cole and Wells, 2013). CE-QUAL-W2 is …

Interpretable Machine Learning And Sparse Coding For Computer Vision, Will Landecker

Dissertations and Theses

Machine learning offers many powerful tools for prediction. One of these tools, the binary classifier, is often considered a black box. Although its predictions may be accurate, we might never know why the classifier made a particular prediction. In the first half of this dissertation, I review the state of the art of interpretable methods (methods for explaining why); after noting where the existing methods fall short, I propose a new method for a particular type of black box called additive networks. I offer a proof of trustworthiness for this new method (meaning a proof that my method does not …

Optical Injection Unlocking For Cavity Ringdown Spectroscopy, Gregory A. Bostrom, Andrew L. Rice, Dean B. Atkinson

Physics Faculty Publications and Presentations

Continuous wave cavity ringdown spectroscopy requires a rapid termination of the injection of light into the cavity to initiate the decay (i.e., ringdown) event. We demonstrate a technique that accomplishes this through pulsed optical injection of a second laser into the main laser, resulting in 20-100 MHz frequency shifts in the otherwise cavity-locked main laser sufficient to create ringdown events at 3.5 kHz. Data on the frequency shift as a function of both main laser current and relative wavelength are presented, 88 well 88 a demonstration that single exponential decays are maintained in the process.

Exact Tests For Singular Network Data, Ian H. Dinwoodie, Kruti Pandya

Mathematics and Statistics Faculty Publications and Presentations

We propose methodology for exact statistical tests of hypotheses for models of network dynamics. The methodology formulates Markovian exponential families, then uses sequential importance sampling to compute expectations within basins of attraction and within level sets of a sufficient statistic for an over-dispersion model. Comparisons of hypotheses can be done conditional on basins of attraction. Examples are presented.

Promiscuous And Adaptable Enzymes Fill “Holes” In The Tetrahydrofolate Pathway In Chlamydia Species, Nancy E. Adams, Jennifer J. Thiaville, James Proestos, Ana L. Juárez-Vázquez, Andrea J. Mccoy, Francisco Barona-Gómez, Dirk Iwata-Reuyl, Valérie De Crécy-Lagard, Anthony T. Maurelli

Chemistry Faculty Publications and Presentations

Folates are tripartite molecules comprising pterin, para-aminobenzoate (PABA), and glutamate moieties, which are essential cofactors involved in DNA and amino acid synthesis. The obligately intracellular Chlamydia species have lost several biosynthetic pathways for essential nutrients which they can obtain from their host but have retained the capacity to synthesize folate. In most bacteria, synthesis of the pterin moiety of folate requires the FolEQBK enzymes, while synthesis of the PABA moiety is carried out by the PabABC enzymes. Bioinformatic analyses reveal that while members of Chlamydia are missing the genes for FolE (GTP cyclohydrolase) and FolQ, which catalyze the initial …

Analysis Of Landsat Satellite Data To Monitor Water Quality Parameters In Tenmile Lake, Oregon, Michael T. Waxter

Civil and Environmental Engineering Master's Project Reports

The health of North and South Tenmile Lakes in coastal Oregon has declined since the introduction of invasive species of fish and plant life in the 1920s. The lakes are now on the Federal Clean Water Act list of impaired water bodies due, in part, to a lack of dissolved oxygen and Hazardous Algae Blooms (HAB) blooms that occur during June through September. In this report we discuss the possibility of detecting and monitoring these blooms using satellite measurements of water surface color. In-situ measurements obtained from the Tenmile Lakes Basin Partnership were used to calibrate reflectance from the Thematic …

Necessary Condition For Local Quantum Operations And Classical Communication With Extensive Violation By Separable Operations, Scott M. Cohen

Physics Faculty Publications and Presentations

We give a conceptually simple necessary condition such that a separable quantum operation can be implemented by local operations on subsystems and classical communication between parties (LOCC), a condition which follows from a novel approach to understanding LOCC. This necessary condition applies to all LOCC protocols involving any number of parties and any finite number of rounds of communication. Furthermore, it demonstrates an extremely strong difference between separable operations and LOCC, in that there exist examples of the former for which the condition is extensively violated. More precisely, the violation by separable operations of our necessary condition for LOCC grows …

Evidence-Based Decision Making In Coastal Oregon: Increasing The Effectiveness Of Policy And Management Decisions, Kaitlin Goldsmith

Environmental Science and Management Professional Master's Project Reports

Changing climatic conditions, demographics, and land uses are projected to alter the provisioning of ecosystem services in estuarine, coastal and nearshore marine ecosystems, necessitating mitigation and adaptation policies and management. The current paradigm of siloed research efforts occurring in parallel to, rather than in collaboration with, decision-makers will be insufficient for the rapid responses required to adapt to and mitigate for projected changing conditions in coastal areas. Here, I suggest a different paradigm: one where research begins by engaging decision-makers in the identification of priority research needs (biophysical, economic, and social), and in which researchers analyze and present data in …

Report On The Workshop For Life Detection In Samples From Mars, Gerhard Kminek, Catherine Conley, Carlton C. Allen, Douglas H. Bartlett, David W. Beaty, Liane G. Benning, Rohit Bhatia, Penelope J. Boston, Caroline Duchaine, Jack D. Farmer, George J. Flynn, Daniel P. Glavin, Yuri Gorby, John E. Hallsworth, Rakesh Mogul, Duane Moser, P. Buford Price, Ruediger Pukall, David Fernandez-Remolar, Caroline L. Smith, Kenneth M. Stedman, Andrew Steele, Ramunas Stepanauskas, Henry Sun, Jorge L. Vago, Mary A. Voytek, Paul S. Weiss, Frances Westfall

Biology Faculty Publications and Presentations

The question of whether there is or was life on Mars has been one of the most pivotal since Schiaparellis’ telescopic observations of the red planet. With the advent of the space age, this question can be addressed directly by exploring the surface of Mars and by bringing samples to Earth for analysis. The latter, however, is not free of problems. Life can be found virtually everywhere on Earth. Hence the potential for contaminating the Mars samples and compromising their scientific integrity is not negligible. Conversely, if life is present in samples from Mars, this may represent a potential source …

Complex Thermal Histories Of L Melt Breccias Nwa 5964 And Nwa 6580, Kristy Lee Schepker

Dissertations and Theses

To constrain the thermal histories of two complex L chondrite melt breccia samples (NWA 5964 and NWA 6580) we compare textures and chemical compositions of metal and sulfide to L melt rock (NWA 6454 and NWA 6579) and strongly shocked (shock stage S6) (NWA 4860) samples. The inferred thermal histories can be used to evaluate formation settings on the L chondrite parent body. The L melt samples probably formed as different melt units within warm but largely unmelted material relatively close to the surface of the parent body, and the same is true for the S6 sample, except it experienced …

Community Level Impacts Associated With The Invasion Of English Ivy (Hedera Spp.) In Forest Park: A Look At The Impacts Of Ivy On Community Composition And Soil Moisture, Sara Rose Copp

Dissertations and Theses

Invasive species degrade ecosystems by altering natural processes and decreasing the abundance and diversity of native flora. Communities with major fluctuations in resource supply allow invasive species to exploit limiting resources making the community prone to invasion. In the Pacific Northwest, urban forests characterized with limited light and seasonally limited soil moisture are being dominated by nonnative English ivy (Hedera spp). Three observational studies were conducted in the Southern end of Forest Park within the Balch Creek Subwatershed in Portland, Oregon in order to understand 1) how English ivy changes over three growing seasons, 2) how the native …

Macroinvertebrates And Excessive Fine Sediment Conditions In Oregon Coastal Streams, Patrick M. Edwards

Dissertations and Theses

The Pacific Coastal ecoregion contains large tracts of economically important forest lands that also serve as critical stream habitat for endangered Salmonids. Excessive fine sediment deposition in streams of this region is a major environmental concern in the region but difficult to measure directly. The use of stream invertebrates to monitor fine sediment conditions in streams requires careful consideration of several important factors that complicate their use as bioindicators including high spatial and temporal variability and covariance with other environmental variables.

To evaluate the use of stream invertebrates as bioindicators of excessive fine sediment, three hypotheses were tested. The first …

Characterization Of Methylene Diphenyl Diisocyanate Protein Conjugates, Morgen Mhike

Dissertations and Theses

Diisocyanates (dNCO) such as methylene diphenyl diisocyanate (MDI) are used primarily as cross-linking agents in the production of polyurethane products such as paints, elastomers, coatings and adhesives, and are the most frequently reported cause of chemically induced immunologic sensitization and occupational asthma (OA). Immune mediated hypersensitivity reactions to dNCOs include allergic rhinitis, asthma, hypersensitivity pneumonitis and allergic contact dermatitis.

There is currently no simple diagnosis for the identification of dNCO asthma due to the variability of symptoms and uncertainty regarding the underlying mechanisms. Immunological sensitization due to dNCO exposure is traditionally thought to require initial conjugation of the dNCO to …

Toward A Reliable Prediction Of Seasonal Forecast Uncertainty: Addressing Model And Initial Condition Uncertainty With Ensemble Data Assimilation And Sequential Bayesian Combination, Caleb Matthew Dechant, Hamid Moradkhani

Civil and Environmental Engineering Faculty Publications and Presentations

Uncertainties are an unfortunate yet inevitable part of any forecasting system. Within the context of seasonal hydrologic predictions, these uncertainties can be attributed to three causes: imperfect characterization of initial conditions, an incomplete knowledge of future climate and errors within computational models. This study proposes a method to account for all threes sources of uncertainty, providing a framework to reduce uncertainty and accurately convey persistent predictive uncertainty. In currently available forecast products, only a partial accounting of uncertainty is performed, with the focus primarily on meteorological forcing. For example, the Ensemble Streamflow Prediction (ESP) technique uses meteorological climatology to estimate …