Physical Sciences and Mathematics Commons^™

The Community Economic Impacts Of Large Wildfires: A Case Study From Trinity County, California, Emily Jane Davis, Cassandra Moseley, Max Nielsen-Pincus, Pamela J. Jakes

Environmental Science and Management Faculty Publications and Presentations

Wildfires are increasing in severity and frequency in the American West, but there is limited understanding of their economic effects at the community level. We conducted a case study of the impacts of large wildfires in 2008 in Trinity County, California, by examining labor market, suppression spending, and qualitative interview data. We found that the 2008 fires had interrelated effects on several economic sectors in the county. Labor market data indicated a decrease in total private-sector employment and wages and an increase in public-sector employment and wages during the summer of 2008 compared to the previous year, while interviews captured …

Mapping Landscape Values: Issues, Challenges And Lessons Learned From Field Work On The Olympic Peninsula, Washington, Diane Besser, Rebecca J. Mclain, Lee Cerveny, Kelly Biedenweg, David Banis

Geography Faculty Publications and Presentations

In order to inform natural resource policy and land management decisions, landscape values mapping (LVM) is increasingly used to collect data about the meanings that people attach to places and the activities associated with those places. This type of mapping provides geographically referenced data on areas of high density of values or associated with different types of values. This article focuses on issues and challenges that commonly occur in LVM, drawing on lessons learned in the US Forest Service Olympic Peninsula Human Ecology Mapping Project. The discussion covers choosing a spatial scale for collecting data, creating the base map, developing …

An Eigenvector-Based Test For Local Stationarity Applied To Array Processing, Jorge Quijano, Lisa M. Zurk

Electrical and Computer Engineering Faculty Publications and Presentations

In sonar array processing, a challenging problem is the estimation of the data covariance matrix in the presence of moving targets in the water column, since the time interval of data local stationarity is limited. This work describes an eigenvector-based method for proper data segmentation into intervals that exhibit local stationarity, providing data-driven higher bounds for the number of snapshots available for computation of time-varying sample covariance matrices. Application of the test is illustrated with simulated data in a horizontal array for the detection of a quiet source in the presence of a loud interferer.

Construction Of An Environmental Quality Index For Public Health Research, Lynne C. Messer, Jyotsna S. Jagai, Kristen M. Rappazzo, Danelle T. Lobdell

Community Health Faculty Publications and Presentations

Background

A more comprehensive estimate of environmental quality would improve our understanding of the relationship between environmental conditions and human health. An environmental quality index (EQI) for all counties in the U.S. was developed.

Methods

The EQI was developed in four parts: domain identification; data source acquisition; variable construction; and data reduction. Five environmental domains (air, water, land, built and sociodemographic) were recognized. Within each domain, data sources were identified; each was temporally (years 2000–2005) and geographically (county) restricted. Variables were constructed for each domain and assessed for missingness, collinearity, and normality. Domain-specific data reduction was accomplished using principal components …

Vanishing Configurations In Network Dynamics With Asynchronous Updates, Ian H. Dinwoodie

Mathematics and Statistics Faculty Publications and Presentations

We consider Boolean dynamics for biological networks where stochasticity is introduced through asynchronous updates. An exact method is given for finding states which can reach a steady state with positive probability, and a method is given for finding states which cannot reach other steady states. These methods are based on computational commutative algebra. The algorithms are applied to dynamics of a cell survival network to determine node assignments that exclude termination in a cancerous state

Subwavelength Visualization Of Light In Thin Film Waveguides With Photoelectrons, Joseph P. Fitzgerald, Robert Campbell Word, Rolf Könenkamp

Physics Faculty Publications and Presentations

We report the visualization and quantitative analysis of electromagnetic surface fields at solid surfaces with the potential for λ/50 resolution. To illustrate this capability, we investigate patterns in two-photon photoemission images of light-diffracting structures in waveguiding, transparent thin films. The obtained micrographs show interference patterns between incident and guided light with a remarkable sensitivity to subwavelength features. We demonstrate that photoemission rates are directly related to the surface field strengths and develop a subwavelength method to calculate the surface fields from optical properties and surface topology based on the two-dimensional Kirchhoff diffraction integral. Calculated images based on this theoretical approach …

Quantifying The Impacts Of Initial Condition And Model Uncertainty On Hydrological Forecasts, Caleb Matthew Dechant

Dissertations and Theses

Forecasts of hydrological information are vital for many of society's functions. Availability of water is a requirement for any civilization, and this necessitates quantitative estimates of water for effective resource management. The research in this dissertation will focus on the forecasting of hydrological quantities, with emphasis on times of anomalously low water availability, commonly referred to as droughts. Of particular focus is the quantification of uncertainty in hydrological forecasts, and the factors that affect that uncertainty. With this focus, Bayesian methods, including ensemble data assimilation and multi-model combinations, are utilized to develop a probabilistic forecasting system. This system is applied …

Predicting The Optical Response Of A Generalized Multilayer Thin Film, A.J. Lawrence, Erik J. Sánchez

Student Research Symposium

The contrast mechanism in Kerr imaging is the apparent angle through which the plane of polarization is rotated upon reflection from a magnetic surface, and this can be calculated for a well characterized surface given the polarization state of the incident light. As in traditional optical microscopy, the spatial resolution is limited by diffraction to roughly half the wavelength of the illumination light. The diffraction limit can be circumvented through the use of near-field scanning optical microscopy, in which the illumination source is an evanescent field at the tip of a tapered optical fiber. The complication in merging these two …

Zinc Oxide Random Laser Threshold Enhancement Via Addition Of Passive Scatterers, Zachariah M. Peterson, Rolf Könenkamp, Robert Campbell Word

Student Research Symposium

Zinc oxide (ZnO) is a wide bandgap n-type semiconductor with a variety of optical and electrical applications and many methods of fabrication. Strong optical scattering and photoluminescence from ZnO nanoparticles and films makes the material an ideal candidate for a random laser. Previous studies have shown both incoherent and coherent random lasing from ZnO films and particles agglomerations. When used as a passive scatterer in a laser dye gain medium, the addition of ZnO has been shown to improve the threshold for lasing. By combining active scattering ZnO with a passive scatterer, MgO, we show here that the lasing threshold …

Open-Source, Low-Cost Sensor For Custom Water Level Monitoring In Observation Wells And Piezometers, Leslie A. Mowbray

Student Research Symposium

Many commercial sensors exist for monitoring water levels in piezometers and wells. However, these sensors tend to be expensive and contain proprietary hardware and software that make customization by users difficult. Recently, the vast open-source Arduino programming community has enabled the development of highly customizable, low cost sensors with the precision and accuracy needed for scientific research. Here, an ultrasonic distance sensor is developed to monitor the water level in a 2” piezometer with sub-centimeter resolution, powered by a lead-acid battery and solar cell to record sub-minute time increments for duration of days to weeks. This sensor was developed specifically …

Candy Flavorings In Tobacco, Jessica E. Brown, Wentai Luo, Lorne M. Isabelle, James F. Pankow

Chemistry Faculty Publications and Presentations

Professor James F. Pankow reveals striking similarities between the patterns in the flavoring chemicals used in flavored tobacco products and those in popular candy and Kool-Aid products. The authors analyzed 12 artificially flavored candy and fruit drink products and compared them to 15 widely-available flavored tobacco products. They found significant overlap in the chemical signatures of the flavor chemicals. Several of the tobacco products contained flavor chemicals at much higher concentrations than in the non-tobacco products.

Assessing Hydrologic And Water Quality Sensitivities To Precipitation Changes, Urban Growth And Land Management Using Swat, Alexander Michael Psaris

Dissertations and Theses

Precipitation changes and urban growth are two factors altering the state of water quality. Changes in precipitation will alter the amount and timing of flows, and the corresponding sediment and nutrient dynamics. Meanwhile, densification associated with urban growth will create more impervious surfaces which will alter sediment and nutrient loadings. Land and water managers often rely on models to develop possible future scenarios and devise management responses to these projected changes. We use the Soil and Water Assessment Tool (SWAT) to assess the sensitivities of stream flow, sediment, and nutrient loads in two urbanizing watersheds in Northwest Oregon, USA to …

Searching For Biogeochemical Hot Spots In Three Dimensions: Soil C And N Cycling In Hydropedologic Settings In A Northern Hardwood Forest, Jennifer L. Morse, S F. Werner, Cody P. Gillin, Christine L. Goodale, Scott W. Bailey, Kevin J. Mcguire, Peter M. Groffman

Environmental Science and Management Faculty Publications and Presentations

Understanding and predicting the extent, location, and function of biogeochemical hot spots at the watershed scale is a frontier in environmental science. We applied a hydropedologic approach to identify (1) biogeochemical differences among morphologically distinct hydropedologic settings and (2) hot spots of microbial carbon (C) and nitrogen (N) cycling activity in a northern hardwood forest in Hubbard Brook Experimental Forest, New Hampshire, USA. We assessed variables related to C and N cycling in spodic hydropedologic settings (typical podzols, bimodal podzols, and Bh podzols) and groundwater seeps during August 2010. We found that soil horizons (Oi/Oe, Oa/A, and B) differed significantly …

A Facile Route To Tailoring Peptide-Stabilized Gold Nanoparticles Using Glutathione As A Synthon, Rosina Ho Wu, Tan P. Nguyen, Grant W. Marquart, Thomas J. Miesen, Theresa Mau, Marilyn R. Mackiewicz

Chemistry Faculty Publications and Presentations

The preparation of gold nanoparticles (AuNPs) of high purity and stability remains a major challenge for biological applications. This paper reports a simple synthetic strategy to prepare water-soluble peptide-stabilized AuNPs. Reduced glutathione, a natural tripeptide, was used as a synthon for the growth of two peptide chains directly on the AuNP surface. Both nonpolar (tryptophan and methionine) and polar basic (histidine and dansylated arginine) amino acids were conjugated to the GSH-capped AuNPs. Ultracentrifugation concentrators with polyethersulfone (PES) membranes were used to purify precursor materials in each stage of the multi-step synthesis to minimize side reactions. Thin layer chromatography, transmission electron …

The Impact Of Surface Ligands And Synthesis Method On The Toxicity Of Glutathione-Coated Gold Nanoparticles, Bryan Harper, Federico Sinche, Meenambika Gowrishankar, Grant Marquart, Marilyn R. Mackiewicz, Stacey L. Harper

Chemistry Faculty Publications and Presentations

Gold nanoparticles (AuNPs) are increasingly used in biomedical applications, hence understanding the processes that affect their biocompatibility and stability are of significant interest. In this study, we assessed the stability of peptide-capped AuNPs and used the embryonic zebrafish (Danio rerio) as a vertebrate system to investigate the impact of synthesis method and purity on their biocompatibility. Using glutathione (GSH) as a stabilizer, Au-GSH nanoparticles with identical core sizes were terminally modified with Tryptophan (Trp), Histidine (His) or Methionine (Met) amino acids and purified by either dialysis or ultracentrifugation. Au-GSH-(Trp)2 purified by dialysis elicited significant morbidity and mortality at …

Impact Of Soil Moisture–Atmosphere Interactions On Surface Temperature Distribution, Alexis Berg, Benjamin R. Lintner, Kirsten L. Findell, Sergey Malyshev, Paul C. Loikith, Pierre Gentine

Geography Faculty Publications and Presentations

Understanding how different physical processes can shape the probability distribution function (PDF) of surface temperature, in particular the tails of the distribution, is essential for the attribution and projection of future extreme temperature events. In this study, the contribution of soil moisture–atmosphere interactions to surface temperature PDFs is investigated. Soil moisture represents a key variable in the coupling of the land and atmosphere, since it controls the partitioning of available energy between sensible and latent heat flux at the surface. Consequently, soil moisture variability driven by the atmosphere may feed back onto the near-surface climate—in particular, temperature. In this study, …

Stochastic Order Relations Among Parallel Systems From Weibull Distributions, Nuria Torrado, Subhash C. Kochar

Mathematics and Statistics Faculty Publications and Presentations

In this article, we focus on stochastic orders to compare the magnitudes of two parallel systems from Weibull distributions when one set of scale parameters majorizes the other. The new results obtained here extend some of those proved by Dykstra et al. (1997) and Joo and Mi (2010) from exponential to Weibull distributions. Also, we present some results for parallel systems from multiple-outlier Weibull models.

Interpretation Of Chemical Environments By Rna And The Implications To The Origins Of Life, Brian Larson

Dissertations and Theses

We describe the initial realization of behavior in the biosphere, which we term behavioral chemistry. If molecules are complex enough to attain a stochastic element to their structural conformation in such a way as to radically affect their function in a biological (evolvable) setting, then they have the capacity to behave. This circumstance is described here as behavioral chemistry, unique in its definition from the colloquial chemical behavior. This transition between chemical behavior and behavioral chemistry need be explicit when discussing the root cause of behavior, which itself lies squarely at the origins of life and is the foundation of …

Relationships Between Environmental Governance And Water Quality In A Growing Metropolitan Area Of The Pacific Northwest, Usa, Heejun Chang, Paul R. Thiers, Noelwah R. Netusil, J. Alan Yeakley, Gretchen Rollwagen-Bollens, Steve Bollens, Sonia Singh

Geography Faculty Publications and Presentations

We investigate relationships between environmental governance and water quality in two adjacent growing metropolitan areas in the western US. While the Portland, Oregon and Vancouver, Washington metro areas share many common biophysical characteristics, they have different land development histories and water governance structures, providing a unique opportunity for examining how differences in governance might affect environmental quality. We conceptualize possible linkages in which water quality influences governance directly, using monitoring efforts as a metric, and indirectly by using the change in the sale price of single-family residential properties. Governance may then influence water quality directly through riparian restoration resulting from …

Household Water Demand And Land Use Context: A Multilevel Approach, Elizabeth Yancey Breyer

Dissertations and Theses

Urban water use arises from a mix of scale-dependent biophysical and socioeconomic factors. In Portland, Oregon, single-family residential water use exhibits a tightly coupled relationship with summertime weather, although this relationship varies with land use patterns across households and neighborhoods. This thesis developed a multilevel regression model to evaluate the relative importance of weather variability, parcel land use characteristics, and neighborhood geographic context in explaining single-family residential water demand patterns in the Portland metropolitan area. The model drew on a high-resolution panel dataset of weekly mean summer water use over five years (2001-2005) for a sample of 460 single-family households …

Learning Two-Input Linear And Nonlinear Analog Functions With A Simple Chemical System, Peter Banda, Christof Teuscher

Computer Science Faculty Publications and Presentations

The current biochemical information processing systems behave in a predetermined manner because all features are defined during the design phase. To make such unconventional computing systems reusable and programmable for biomedical applications, adaptation, learning, and self-modification baaed on external stimuli would be highly desirable. However, so far, it haa been too challenging to implement these in real or simulated chemistries. In this paper we extend the chemical perceptron, a model previously proposed by the authors, to function as an analog instead of a binary system. The new analog asymmetric signal perceptron learns through feedback and supports MichaelisMenten kinetics. The results …

Osmb Final Report, Task 7: Online Atlas Of Oregon Lakes - Aquatic Invasive Species Interface, Rich Miller, Mark D. Sytsma

Center for Lakes and Reservoirs Publications and Presentations

In order to educate a broad cross section of the public about Aquatic Invasive Species (AIS) distributions and survey efforts in Oregon’s lakes and reservoirs, database connections were created to display AIS information on the Online Atlas of Oregon Lakes (aol.research.pdx.edu/). The connections allowed for the dynamic display of AIS survey records stored in three separate databases: the Center for Lakes and Reservoir’s Oregon Aquatic Plant and Mussel Databases and the iMapInvasives database. AIS survey records collected by the Center for Lakes and Reservoirs were also reported to the iMapInvasives database.

Osmb Final Report, Task 4: Oregon Lake Watch, Angela L. Strecker, Rich Miller, Vanessa Morgan

Center for Lakes and Reservoirs Publications and Presentations

The Oregon Lake Watch (OLW) volunteer monitoring program was resurrected after over a decade in hibernation. The new program was designed to educate the public about threats of aquatic invasive species (AIS), provide early detection of AIS invasions, and provide long term water quality data for the better management of Oregon’s lakes and reservoirs. Protocols were created for citizen scientists to survey for AIS, collect temperature and water clarity data, and record the data through an online data entry portal. An OLW website was developed to educate about AIS and provide survey protocols and identification materials to volunteers. AIS surveys …

Modelling Rainwater-Harvesting System Reliability Based On Historical Precipitation Data For Portland, Mrinali Mathur

Civil and Environmental Engineering Master's Project Reports

Rainwater harvesting can ease the water availability problems for many parts of the world where water is not easily available. It is also a solution for minimizing stormwater runoff and better managing sewers by preventing combined sewers to overflow. The goal of this project is to calculate the reliability of rainwater harvesting systems and provide optimum size of the storage tank using historical records for Portland specific rain pattern. A simple water balance approach for historical data is used to calculate the reliability by which rainwater harvesting system can be used as a means of irrigating gardens in Portland. The …

Streamflow Modeling Of Johnson Creek Subwatersheds Using The Precipitation Runoff Modeling System, Theophilus Matthew Malone

Civil and Environmental Engineering Master's Project Reports

Johnson Creek, in the Portland, Oregon metropolitan region, has several pollutants on the U.S. Environmental Protection Agency's (EPA) 303(d) list including excess heat, low dissolved oxygen, and harmful bacteria. Understanding streamflow response to precipitation events is an important component to evaluating water quality trends and calculating the Total Maximum Daily Load (TMDL) for pollutants of concern. Investigating the streamflow-precipitation relationship on the subwatershed scale can give insight to the hydrologic response of a given watershed. However, developing rating curves for several subwatersheds can be cost and time prohibitive. The objective of this project was to develop a hydrologic model using …

The Effectiveness Of Forest Collaborative Groups At Reducing The Likelihood Of Project Appeals And Objections In Eastern Oregon, Brent M. Summers

Environmental Science and Management Professional Master's Project Reports

Collaborative planning has been used as a tool to address wicked natural resource conflicts and engage those affected by federal land management agency decisions. The United States Forest Service (USFS) is mandated by law to involve the public on project-level planning. In Oregon, Forest Collaborative Groups have been engaging with the USFS to involve stakeholders who are concerned with the activities on National Forests. It is widely believed that these groups are reducing project-level appeals and objections (appeals); however, there is no empirical evidence to validate these beliefs. National Environmental Protect Act (NEPA) document data were collected from the USFS …

Serial Transfer Can Aid The Evolution Of Autocatalytic Sets, Wim Hordijk, Nilesh Vaidya, Niles Lehman

Chemistry Faculty Publications and Presentations

Background: The concept of an autocatalytic set of molecules has been posited theoretically and demonstrated empirically with catalytic RNA molecules. For this concept to have significance in a realistic origins-of-life scenario, it will be important to demonstrate the evolvability of such sets. Here, we employ a Gillespie algorithm to improve and expand on previous simulations of an empirical system of self-assembling RNA fragments that has the ability to spontaneously form autocatalytic networks. We specifically examine the role of serial transfer as a plausible means to allow time-dependent changes in set composition, and compare the results to equilibrium, or "batch" scenarios. …

A Missing Piece In The Sustainability Movement: The Human Spirit, Deborah S. Peterson

Educational Leadership and Policy Faculty Publications and Presentations

The sustainability movement, committed to the health of our natural world, is making a critical contribution to society. While many agree the sustainability movement should focus on the natural world, recent articles call for an additional focus on human welfare. This article proposes that a missing piece of the sustainability movement is a discussion of the role of the human spirit. By focusing narrowly on an examination of the state of the natural world, we are neglecting to incorporate the deep and enduring power of the human spirit to transform our natural and human-made environment and to support change agents …

An Analysis Of The Practical Dpg Method, Jay Gopalakrishnan, Weifeng Qiu

Mathematics and Statistics Faculty Publications and Presentations

We give a complete error analysis of the Discontinuous Petrov Galerkin (DPG) method, accounting for all the approximations made in its practical implementation. Specifically, we consider the DPG method that uses a trial space consisting of polynomials of degree p on each mesh element. Earlier works showed that there is a "trial-to-test" operator T, which when applied to the trial space, defines a test space that guarantees stability. In DPG formulations, this operator T is local: it can be applied element-by-element. However, an infinite dimensional problem on each mesh element needed to be solved to apply T. In practical computations, …

Near-Surface Internal Melting: A Substantial Mass Loss On Antarctic Dry Valley Glaciers, Matthew J. Hoffman, Andrew G. Fountain, Glen E. Liston

Geology Faculty Publications and Presentations

The McMurdo Dry Valleys, southern Victoria Land, East Antarctica, are a polar desert, and melt from glacial ice is the primary source of water to streams, lakes and associated ecosystems. Previous work found that to adequately model glacier ablation and subsurface ice temperatures with a surface energy-balance model required including the transmission of solar radiation into the ice. Here we investigate the contribution of subsurface melt to the mass balance of (and runoff from) Dry Valley glaciers by including a drainage process in the model and applying the model to three glacier sites using 13years of hourly meteorological data. Model …