Physical Sciences and Mathematics Commons^™

The Meaning Of Red And Green In User Interfaces For The Color Deficient, Bassel Hamieh

University Honors Theses

Around 108 million web users are color blind which is a problem when the way we communicate over the web or interfaces is through the use of color. Red and green are two colors that are especially heavily used in interface design because of their strong symbolic associations; red being a sign to warn or stop and green being the opposite. This has a large effect on red-green color blind people who are not able to perceive either of those colors correctly. Many solutions exist that aim to help through color differentiation but none take into account color symbolism. With …

Empirical Analysis Of Cbow And Skip Gram Nlp Models, Tejas Menon

University Honors Theses

CBOW and Skip Gram are two NLP techniques to produce word embedding models that are accurate and performant. They were invented in the seminal paper by T. Mikolov et al. and have since observed optimizations such as negative sampling and subsampling. This paper implements a fully-optimized version of these models using Py-Torch and runs them through a toy sentiment/subject analysis. It is weakly observed that different corpus types affect the skew of word embeddings such that fictional corpus are better suited for sentiment analysis and non-fictional for subject analysis.

Automatic Keyphrase Extraction From Russian-Language Scholarly Papers In Computational Linguistics, Yves Wienecke

University Honors Theses

The automatic extraction of keyphrases from scholarly papers is a necessary step for many Natural Language Processing (NLP) tasks, including text retrieval, machine translation, and text summarization. However, due to the different grammatical and semantic intricacies of languages, this is a highly language-dependent task. Many free and open source implementations of state-of-the-art keyphrase extraction techniques exist, but they are not adapted for processing Russian text. Furthermore, the multi-linguistic character of scholarly papers in the field of Russian computational linguistics and NLP introduces additional complexity to keyphrase extraction. This paper describes a free and open source program as a proof of …

Functional Programming For Systems Software: Implementing Baremetal Programs In Habit, Donovan Ellison

University Honors Theses

Programming in a baremetal environment, directly on top of hardware with very little to help manage memory or ensure safety, can be dangerous even for experienced programmers. Programming languages can ease the burden on developers and sometimes take care of entire sets of errors. This is not the case for a language like C that will do almost anything you want, for better or worse. To operate in a baremetal environment often requires direct control over memory, but it would be nice to have that capability without sacrificing safety guarantees. Rust is a new language that aims to fit this …

Data From: Forest Density Intensifies The Importance Of Snowpack To Growth In Water-Limited Pine Forests, Kelly E. Gleason, John B. Bradford, Anthony W. D’Amato, Shawn Fraver, Brian J. Palik, Michael A. Battaglia

Environmental Science and Management Datasets

Research Study
Warming climate and resulting declines in seasonal snowpack have been associated with drought stress and tree mortality in seasonally snow-covered watersheds worldwide. Meanwhile, increasing forest density has further exacerbated drought stress due to intensified tree-tree competition. Using a uniquely detailed dataset of population-level forest growth (n=2495 sampled trees), we examined how inter-annual variability in growth relates to snow volume across a range of forest densities (e.g., competitive environments) in sites spanning a broad aridity gradient across the United States. Forest growth was positively related to snowpack in water-limited forests located at low latitude, and this relationship was intensified …

An Investigation And Comparison Of Stable Isotopes In Meteoric Waters And Groundwaters From Southern Washington, Emily E. Smoot

University Honors Theses

A main source of freshwater in the Pacific Northwest is the Columbia River Basalt Group aquifer system. The semi-arid region of eastern Washington has undergone heavy groundwater depletion in recent decades due to increasing population and expanding agricultural use. Aggressive mining has resulted in drawdowns of up to 30 meters. By using stable isotopes oxygen-eighteen (¹⁸O) and deuterium (D), this study confines the timing of groundwater precipitation and proposes an explanation for why drawdowns are so significant. The isotopic composition of meteoric water is compared to groundwaters from southeast Washington. The two populations are statistically different (p < 0.001, alpha = 0.05). The isotopic composition of groundwaters from the deepest wells (< -150 m msl) are isotopically lighter than meteoric waters and not achievable by recharge under the current climate. These deep groundwaters are interpreted to have precipitated during the Last Glacial Maximum in the late Pleistocene and finished precipitating roughly 5 ka. Thus, replenishment of the aquifer cannot be expected to keep pace with extraction. Additionally, this research examines the elevation response in the stable isotope signature of meteoric water along the 47° N latitude by computing three lapse rates for ^{18 …}

A Review Of Methodologies Applied For Determining Particulate Matter Characterization In Urban Regions, Garrett F. Diehl

University Honors Theses

This is a literature review on previous research conducted on particulate matter deposited on urban vegetation. This was accomplished by searching six databases, that uncovered 37 peer-reviewed journal articles. The main objective of this review is to present the methodology and findings of the articles analyzed to demonstrate how research in this area of study is being conducted. The findings show that there are variations in the literature and that many variables are not being incorporated into the methods and analyses of particulate matter found on urban vegetation. Understanding how different studies have analyzed particulate matter found on urban vegetation …

A Multi-Scale Assessment Of The Relationship Between The Riparian Landscape And The Health Of Streams In Portland, Oregon, Dylan Esmonde

Environmental Science and Management Professional Master's Project Reports

The riparian areas adjacent to streams are sensitive and important environments that have a great deal of influence on the overall health of the streams they border. In cities, riparian areas are routinely impacted and degraded by property developments, urban infrastructure, and other alterations to the natural environment. In this study, I worked with the City of Portland to determine how a wide range of landscape features occurring in riparian areas affect the overall health of streams at multiple scales. Data were collected from buffer areas of widths ranging from 15 ft to 500 ft that were digitally generated around …

Long Term Changes To The Lower Columbia River Estuary (Lcre) Hydrodynamics And Salinity Patterns, Aqeel Al-Bahadily

Dissertations and Theses

Changing the morphological and hydrological conditions of an estuary can affect the estuarine hydrodynamics. The hydrograph of the Lower Columbia River Estuary (LCRE) and its bathymetry have been altered significantly over the past 150 years, such that the spring-freshet has decreased by 40-50% while winter flow has increased by 50%. In addition, the inlet width has been narrowed from 9.7 to 3.2km by the construction of jetties, and the controlling depth of the navigation channel has been deepened from 6 to 13m by continuous dredging. Also, ~70% of the shallow water habitat has been lost due to diking and wetland …

Convex And Nonconvex Optimization Techniques For Multifacility Location And Clustering, Tuyen Dang Thanh Tran

Dissertations and Theses

This thesis contains contributions in two main areas: calculus rules for generalized differentiation and optimization methods for solving nonsmooth nonconvex problems with applications to multifacility location and clustering. A variational geometric approach is used for developing calculus rules for subgradients and Fenchel conjugates of convex functions that are not necessarily differentiable in locally convex topological and Banach spaces. These calculus rules are useful for further applications to nonsmooth optimization from both theoretical and numerical aspects. Next, we consider optimization methods for solving nonsmooth optimization problems in which the objective functions are not necessarily convex. We particularly focus on the class …

Improving The Understanding Of Jet Grooming In Perturbation Theory, Andrew J. Larkoski

Portland Institute for Computational Science Publications

Jet grooming has emerged as a necessary and powerful tool in a precision jet physics program. In this paper, we present three results on jet grooming in perturbation theory, focusing on heavy jet mass in e⁺e⁻ → hadrons collisions, groomed with the modified mass drop tagger. First, we calculate the analytic cross section at leading-order. Second, using the leading-order result and numerical results through next-to-next-to-leading order, we show that cusps in the distribution on the interior of phase space at leading-order are softened at higher orders. Finally, using analytic and numerical results, we show that terms that …

Quantitative And Qualitative Approaches To Assess Tree Vigor And Stand Health In Dry Pine Forests, Nancy Grulke, Craig Bienz, Kate Hrinkevich, Jason Maxfield, Kellie Uyeda

Biology Faculty Publications and Presentations

Despite a critical need to evaluate effectiveness of forest treatments in improving stand health, practitioners lack quantitative, repeatable metrics to assess tree vigor and stand health. We evaluated canopy and whole tree attributes of ponderosa pine (Pinus ponderosa Dougl. Ex Laws) related to carbon balance, water balance, and susceptibility to insects and pathogens in dry, pine-dominated forest stands during a multi-year drought, an environmental challenge to stand resilience. Metrics of trees in two unmanaged, and seven treated forested stands, in both uplands and lowlands to develop the quantitative approach. Whole tree and crown attributes including needle length and color, branchlet …

Sea Surface Microplastics: An Inshore-Offshore Gradient Off The Olympic Peninsula, Rosemary Wood

University Honors Theses

The lack of baseline data regarding plastic debris moving through and accumulating in various environmental compartments creates a vast gap in the literature for a number of reasons. These include a current lack of codified methodology to characterize microplastics both in morphology and polymer type, as well as gaps regarding contamination control & validation techniques. In September of 2019, sea surface sampling took place off the Olympic Peninsula, WA with the goal of addressing the following three research questions. First, is variability in microplastic abundance driven by transect location, distance from shore, or both? Second, how does microplastic type, in …

Collaboration And Evaluation In Urban Sustainability And Resilience Transformations: The Keys To A Just Transition?, Liliana Elizabeth Caughman

Dissertations and Theses

Climate has changed and will continue changing; city populations are swelling as urbanization continues to accelerate; extreme environmental events like heat waves and floods are becoming more severe and more common; and the climate justice movement is rapidly gaining momentum. It in this context that municipal governments find themselves urgently seeking solutions to transition cities from extractive, vulnerable, and unjust to sustainable, resilient, and equitable. The task is complex and will require systemic transformations across interconnected social, environmental, and economic infrastructures. Emerging theories regarding how to govern such massive changes suggest Transition Management strategies and the values of a just …

Projections Of Change In Frequency And Persistence In Atmospheric Ridging Over The Pacific Northwest Using Cmip6 Models, Ellen Koukel

University Honors Theses

The hydroclimatology of the Pacific Northwest is characterized by wet winters and dry summers; however, the end of the rainy season is subject to considerable year-to-year variability. Early onset of the dry season can introduce challenges for water resource managers. Historically, anomalously dry springs are the result of persistent atmospheric ridging, with notable examples in May 2015 and 2018. As climate change may affect the persistence and frequency of ridges, it is important to understand potential changes in springtime ridging. Future changes will have implications for the length of the rainy season and consequently freshwater availability throughout the region. Therefore, …

On Dc And Local Dc Functions, Liam Jemison

University Honors Theses

In this project we investigate the class of functions which can be represented by a difference of convex functions, hereafter referred to simply as 'DC' functions. DC functions are of interest in optimization because they allow the use of convex optimization techniques in certain non-convex problems. We present known results about DC and locally DC functions, including detailed proofs of important theorems by Hartman and Vesely.

We also investigate the DCA algorithm for optimizing DC functions and implement it to solve the support vector machine problem.

Fallen Objects: Collaborating With Artificial Intelligence In The Field Of Graphic Design, Harrison S. Gerard

University Honors Theses

In this paper, I discuss the creation, execution and reception of my digital art series Fallen Objects, in which I collaborate with a neural net to create pseudo-found objects. I explore how artists might collaborate with Artificial Intelligence obliquely, not by having the AI generate the images themselves, but instead generate input for the artists to make the images. While many artists are focused on training neural nets to replicate their own art inputs, I instead focus on working with an AI trained on external, easily-accessible data and creating images from the prompts it delivers. In this way, the AI …

Effect Of Parasitic Orobanche Uniflora On Sedum Plants And The Potential Implications For Urban Green Roofs, Jessica Bigger

University Honors Theses

An increasing presence of the parasitic plant Orobanche uniflora has been observed on green roofs in urban areas such as Portland, Oregon. Although little is known about these plants, they are believed to be detrimental to host plants such as sedums that grow on green roofs. Orobanche uniflora takes over the host plant’s cellular structure and uses this to take in nutrients. This poses a problem for green roof succulents because if the host plants are killed by the parasite then the green roofs will not be able to function as effectively. Green roofs may also be contributing to an …

Inhibition Of Cancer Causing Genes Through The Delivery Of Omomyc In Anti-Myc Therapy: A Systematic Review, Angie Mcgraw

University Honors Theses

A systematic review of the available studies on the interference of OmoMyc with Myc's function in cancerous cells is presented. Myc is a transcription factor that regulates cellular processes such as apoptosis, proliferation, and differentiation. However, Myc is often overexpressed in a variety of cancers, resulting in abnormal growth of cancer cells. Although the inhibition of Myc has been highly desired, it remained a challenge due to its undruggable characteristics. Attempts to inhibit Myc have involved the usage of small-molecules, but these attempts have failed, causing adverse effects and incomplete inhibition of Myc. Despite promising preclinical studies of OmoMyc, it …

Facilitating Mixed Self-Timed Circuits, Alexandra R. Hanson

University Honors Theses

Designers constrain the ordering of computation events in self-timed circuits to ensure the correct behavior of the circuits. Different circuit families utilize different constraints that, when families are combined, may be more difficult to guarantee in combination without inserting delay to postpone necessary events. By analyzing established constraints of different circuit families like Click and GasP, we are able to identify the small changes necessary to either 1) avoid constraints entirely; or 2) decrease the likelihood of necessary delay insertion. Because delay insertion can be tricky for novice designers and because the likelihood of its requirement increases when mixing different …

Post-Fire Changes In Interior Alaska's Vegetation Composition, Jannike E. Allen

University Honors Theses

Global warming is altering the fire regime of interior Alaska, which may have cascading effects on the prevalence of forest types and species dominance across this region. Our objective was to investigate the relationship between vegetation composition and fire in the boreal forest of interior Alaska. We utilized data from over 700 plots sampled across the landscape designated as the Tanana region by the US Forest Service for Forest Inventory Analysis (FIA), as well as fire history records. We compared biomass and stem density of conifer and hardwood forest types, as well as individual tree species, across a gradient of …

Laurent Series Expansion And Its Applications, Anna Sobczyk

University Honors Theses

The Laurent expansion is a well-known topic in complex analysis for its application in obtaining residues of complex functions around their singularities. Computing the Laurent series of a function around its singularities turns out to be an efficient way to determine the residue of the function as well as to compute the integral of the function along any closed curves around its singularities. Based on the theory of the Laurent series, this paper provides several working examples where the Laurent series of a function is determined and then used to calculate the integral of the function along any closed curve …

Optimized Xanthene-Based Probes For Pancreatic Cancer Imaging, Ian Ruramai Munhenzva

Dissertations and Theses

Pancreatic Ductal Adenocarcinoma (PDAC) is one of the deadliest human malignancies with an extremely poor 5-year survival rate of below 5%. Surgical resection is the most effective treatment of choice because chemotherapy and radiation therapy do not improve life expectancy. Residual tumor after PDAC surgery is common due to a lack of PDAC targeted intraoperative contrast agents to confirm clear margins.

Fluorescence imaging has the potential to improve surgery outcome and PDAC patients' survival rate via the use of highly PDAC-specific molecular probes to facilitate tumor identification. This thesis describes the application of a focused library of benzoxanthene fluorophores for …

Leveraging Model Flexibility And Deep Structure: Non-Parametric And Deep Models For Computer Vision Processes With Applications To Deep Model Compression, Anthony D. Rhodes

Dissertations and Theses

My dissertation presents several new algorithms incorporating non-parametric and deep learning approaches for computer vision and related tasks, including object localization, object tracking and model compression. With respect to object localization, I introduce a method to perform active localization by modeling spatial and other relationships between objects in a coherent "visual situation" using a set of probability distributions. I further refine this approach with the Multipole Density Estimation with Importance Clustering (MIC-Situate) algorithm. Next, I formulate active, "situation" object search as a Bayesian optimization problem using Gaussian Processes. Using my Gaussian Process Context Situation Learning (GP-CL) algorithm, I demonstrate improved …

Smart Contract Vulnerabilities On The Ethereum Blockchain: A Current Perspective, Daniel Steven Connelly

Dissertations and Theses

Ethereum is a unique offshoot of blockchain technologies that incorporates the use of what are called smart contracts or DApps -- small-sized programs that orchestrate financial transactions on the Ethereum blockchain. With this fairly new paradigm in blockchain, however, comes a host of security concerns and a track record that reveals a history of losses in the range of millions of dollars. Since Ethereum is a decentralized entity, these concerns are not allayed as they are in typical financial institutions. For example, there is no Federal Deposit Insurance Corporation (FDIC) to back the investors of these contracts from financial loss …

Addressing Diversity And Inclusion Through Group Comparisons: A Primer On Measurement Invariance Testing, Guizella A. Rocabado, Regis Komperda, Jennifer E. Lewis, Jack Barbera

Chemistry Faculty Publications and Presentations

As the field of chemistry education moves toward greater inclusion and increased participation by underrepresented minorities, standards for investigating the differential impacts and outcomes of learning environments have to be considered. While quantitative methods may not be capable of generating the in-depth nuances of qualitative methods, they can provide meaningful insights when applied at the group level. Thus, when we conduct quantitative studies in which we aim to learn about the similarities or differences of groups within the same learning environment, we must raise our standards of measurement and safeguard against threats to the validity of inferences that might favor …

Microplastic Prevalence In Four Oregon Rivers Along A Rural To Urban Gradient Applying A Cost-Effective Validation Technique, Amy Valine, Ashley Peterson, Dorothy Horn, Kaegan M. Scully‐Engelmeyer, Elise F. Granek

Environmental Science and Management Faculty Publications and Presentations

Microplastics are ubiquitous in our environment and are found in rivers, streams, oceans, and even tap water. Riverine microplastics are relatively understudied compared to those in marine ecosystems. In Oregon, we sampled eight sites along four freshwater rivers spanning rural to urban areas to quantify microplastics. Plankton tow samples from sites along the Columbia, Willamette, Deschutes, and Rogue Rivers were analyzed using traditional light microscopy for initial microplastic counts. Application of Nile Red dye to validate microplastics improved microplastic identification, particularly for particles (Wilcox Test; p‐value=0.001). Nile Red‐corrected microfiber abundance was correlated with human population within five kilometers of the …

Climate From The Mcmurdo Dry Valleys, Antarctica, 1986–2017: Surface Air Temperature Trends And Redefined Summer Season, Maciej K. Obryk, Peter T. Doran, Andrew G. Fountain, M. Myers, Christopher P. Mckay

Geology Faculty Publications and Presentations

The weather of the McMurdo Dry Valleys, Antarctica, the largest ice‐free region of the Antarctica, has been continuously monitored since 1985 with currently 14 operational meteorological stations distributed throughout the valleys. Because climate is based on a 30‐year record of weather, this is the first study to truly define the contemporary climate of the McMurdo Dry Valleys. Mean air temperature and solar radiation based on all stations were −20°C and 102 Wm⁻², respectively. Depending on the site location, the mean annual air temperatures on the valleys floors ranged between −15°C and −30°C, and mean annual solar radiation varied …

Archaeological Feature Identification Through Geochemical Analysis Of Arctic Sediments From The Cape Krusenstern National Monument, Northwest Alaska, Patrick William Reed

Dissertations and Theses

Identification and interpretation of archaeological phenomena is typically based on visual cues and the physical presence of "something archaeological," such as a diagnostic artifact, landscape modification, or structural element. Yet many archaeological features, i.e. the discrete archaeological deposits related to past human behavior, lack clear indicators of human activity that provides clues to the feature's origin. At the Cape Krusenstern beach ridge complex, located in northwest Alaska, ambiguous features, that could be natural or anthropogenic (vegetation anomalies), or are of unknown cultural function (indeterminate), comprise 60% of the identified features at the complex. These ambiguous features represent a large gap …

Analytical Results For The Three-Body Radiative Attachment Rate Coefficient, With Application To The Positive Antihydrogen Ion H̄+, Jack C. Straton

Physics Faculty Publications and Presentations

To overcome the numerical difficulties inherent in the Maxwell–Boltzmann integral of the velocity-weighted cross section that gives the radiative attachment rate coefficient αRA for producing the negative hydrogen ion H⁻ or its antimatter equivalent, the positive antihydrogen ion H¯⁺ , we found the analytic form for this integral. This procedure is useful for temperatures below 700 K, the region for which the production of H¯⁺ has potential use as an intermediate stage in the cooling of antihydrogen to ultra-cold (sub-mK) temperatures for spectroscopic studies and probing the gravitational interaction of the anti-atom. Our results, utilizing a 50-term …