Physical Sciences and Mathematics Commons^™

Relativity Lite: A Pictorial Translation Of Einstein’S Theories Of Motion And Gravity, Jack C. Straton

PDXOpen: Open Educational Resources

Relativity Lite is designed for the General Astronomy sequence (PH 361-2U, SCI 315-6U) whose primary book glosses over Special Relativity and General Relativity while trying to explain the Cosmology that is based on those subjects. Relativity Lite translates the mathematical equations conventional relativity texts rely upon into pictures that are readily understood and contain within them the mathematical essentials. This book provides the comprehensive coverage needed to understand, in sufficient depth, these three linked areas of our reality.

Readers seeking this knowledge on their own, and those in other courses for nonscientists, may also find it helpful.

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Numerical Model Of A Radio Frequency Ion Source For Fusion Plasma Using Particle-In-Cell And Finite Difference Time Domain, Augustin L. Griswold

University Honors Theses

Radio frequency (RF) plasma sources are common tool for application and study, and of particular interest for inertial electrostatic (IEC) fusion. Computational analysis is often carried out using particle in cell (PIC) methods or finite difference time domain (FDTD). However, a more holistic analysis is necessary as the particle distribution is highly dependant on the fields created by the plasma source. Herein, an analysis of a particular planar RF electrode with deuterium gas is provided which covers the fields and the particle behaviour using first FDTD then PIC. Further applications are discussed as well as further directions for this study.

Multicourse Comparative Study Of The Core Aspects For Flipped Learning: Investigating In-Class Structure And Student Use Of Video Resources, Nicole Naibert, Emryse Geye, Michael M. Phillips, Jack Barbera

Chemistry Faculty Publications and Presentations

Since 2013, the number of publications on flipped learning within chemistry have steadily increased. However, most of these studies focus on flipped course reforms within individual institutions, while the outcomes of any learning environment are dependent on how the environment is structured and the degree to which students interact with its elements. In this study, we apply a coordinated set of assessment practices to investigate similarities among flipped chemistry courses at five institutions in the United States. All courses in the study followed the two basic tenets of flipped learning: (1) foundational information was delivered through preclass materials (PCMs), and …

Ronald E. Mcnair Scholars Program Profiles And Abstracts 2020, Mcnair Scholars Program

McNair Symposium

This is the complete event program and provides presentation abstracts and biographies of McNair scholars and their mentors.

Novel View Synthesis - A Neural Network Approach, Hoang Le

Dissertations and Theses

Novel view synthesis is an important research problem in computer vision and computational photography. It enables a wide range of applications including re-cinematography, video enhancement, virtual reality, etc. These algorithms leverage a pre-acquired set of images taken from a set of viewpoints to synthesize another image at a novel viewpoint as if it was captured by a real camera. To synthesize a high-quality novel view, these algorithms often assume a static scene, or the images were captured synchronously. However, the scenes in practice are often dynamic, and taking a dense set of images of these scenes at the same moment …

Synthesis And Assessment Of Radiotherapy-Enhancing Nanoparticles, Hayden Winter

Dissertations and Theses

Radiation Therapy (RT) is a common treatment for cancerous lesions that acts by ionizing matter in the affected tissue, causing cell death. The disadvantage of RT is that it is most often delivered via an external beam of radiation which must pass through healthy tissues to reach the target site, ionizing matter within healthy tissues as well. To address this drawback, techniques are being developed for increasing RT-induced cell death in a target tissue while minimizing cell death in surrounding tissues. This effect is known as radiation dose enhancement or RT enhancement.

The approach to RT enhancement studied in this …

Analyzing Network Topology For Ddos Mitigation Using The Abelian Sandpile Model, Bhavana Panchumarthi, Monroe Ame Stephenson

altREU Projects

A Distributed Denial of Service (DDoS) is a cyber attack, which is capable of triggering a cascading failure in the victim network. While DDoS attacks come in different forms, their general goal is to make a network's service unavailable to its users. A common, but risky, countermeasure is to blackhole or null route the source, or the attacked destination. When a server becomes a blackhole, or referred to as the sink in the paper, the data that is assigned to it "disappears" or gets deleted. Our research shows how mathematical modeling can propose an alternative blackholing strategy that could improve …

Exploring Food Deserts And Environmental Impacts On Health In Chicago And Oregon, Sivasomasundari Arunarasu, Paulina Grzybowicz

altREU Projects

Food deserts are defined as, “an impoverished area where residents lack access to healthy foods”. This lack of access can be due to a combination of socioeconomic, geographic, and food-related variables, and has been proven to impact the health of residents in the area. In this project, several statistical and machine learning techniques are used to model the impact of food desserts and various other factors on health outcomes, including diabetes and obesity rates, in both the different neighborhoods in the City of Chicago and the various counties in the state of Oregon. The models are then used to determine …

Combating Covid On College Campuses: The Impact Of Structural Changes On Viral Transmissions, Jared Knofczynski, Aria Killebrew Bruehl, Ben Warner, Ryne Shelton

altREU Projects

One of the most significant issues in the COVID-19 pandemic is the reopening of schools while minimizing the transmission of coronavirus. Opportunities for evaluating the effectiveness of policies that might be utilized at such institutions are limited, as the necessary empirical data has not been gathered yet. Agent-based modeling, where various entities within an environment are simulated as agents, offers an opportunity to examine the effectiveness of various policies in a way that drastically minimizes the health and economic risks involved. Agent-based modeling is common within biology, ecology and other fields; and has seen some use within the coronavirus literature. …

Eagle Creek Post-Fire Monitoring For Water Temperature & Water Stage, Sylas Daughtrey

Environmental Science and Management Professional Master's Project Reports

When investigating forested watersheds devastated by wildfire, the wide range of disturbance can lead to altering hydrological effects through the loss in ground cover vegetation, canopy cover, while also disrupting soil characteristics. Within the Pacific Northwest, forested drainages affected by post-fire disturbance are further altered in areas that experience seasonal rainfall and snow melt events. When looking at the post-fire sloped areas of Eagle Creek and Tanner Creek within the Columbia Gorge of Oregon, the loss of ground cover and organic matter throughout these two watersheds pose a legitimate concern for erosion events as well as hydrological changes due to …

A New Look At The Quantum Liouville Theorem, P. T. Leung, G. I. Ni

Physics Faculty Publications and Presentations

We clarify certain confusions in the literature of the density operator in quantum mechanics, and demonstrate that the quantum Liouville theorem has the same form in both the Schrodinger and the Heisenberg pictures. Our starting point is to treat the density operator as an observable which has its specific time dependence in each of the two pictures. It is further shown that such a formulation will provide the exact correspondence between classical and quantum statistical mechanics with the Liouville theorem being interpreted as a conservation law, which is derivable from the equation of motion only in the quantum case.

A Simple Predictive Model For Estimating Relative E-Cigarette Toxic Carbonyl Levels, Shawna Vreeke, Xijing Zhu, Robert Strongin

Chemistry Faculty Publications and Presentations

E-cigarette devices are wide ranging, leading to significant differences in levels of toxic carbonyls in their respective aerosols. Power can be a useful method in predicting relative toxin concentrations within the same device, but does not correlate well to inter-device levels. Herein, we have developed a simple mathematical model utilizing parameters of an e-cigarette’s coil and wick in order to predict relative levels of e-liquid solvent degradation. Model 1, which is coil length/(wick surface area*wraps), performed in the moderate-to-substantial range as a predictive tool (R² = 0.69). Twelve devices, spanning a range of coil and wick styles, were analyzed. …

Connexin-46/50 In A Dynamic Lipid Environment Resolved By Cryoem At 1.9 Å, Jonathan A. Flores, Bassam G. Haddad, Kimberly A. Dolan, Janette Bernadette Myers, Craig C. Yoshioka, Jeremy Yoshioka, Daniel M. Zuckerman, Steve L. Reichow

Chemistry Faculty Publications and Presentations

Gap junctions establish direct pathways for cells to transfer metabolic and electrical messages. The local lipid environment is known to affect the structure, stability and intercellular channel activity of gap junctions; however, the molecular basis for these effects remains unknown. Here, we incorporate native connexin-46/50 (Cx46/50) intercellular channels into a dual lipid nanodisc system, mimicking a native cell-to-cell junction. Structural characterization by CryoEM reveals a lipid-induced stabilization to the channel, resulting in a 3D reconstruction at 1.9 Å resolution. Together with all-atom molecular dynamics simulations, it is shown that Cx46/50 in turn imparts long-range stabilization to the dynamic local lipid …

Lectures On Mathematical Computing With Python, Jay Gopalakrishnan

PDXOpen: Open Educational Resources

This open resource is a collection of class activities for use in undergraduate courses aimed at teaching mathematical computing, and computational thinking in general, using the python programming language. It was developed for a second-year course (MTH 271) revamped for a new undergraduate program in data science at Portland State University. The activities are designed to guide students' use of python modules effectively for scientific computation, data analysis, and visualization.

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Reconstructability Analysis & Its Occam Implementation, Martin Zwick

Systems Science Faculty Publications and Presentations

This talk will describe Reconstructability Analysis (RA), a probabilistic graphical modeling methodology deriving from the 1960s work of Ross Ashby and developed in the systems community in the 1980s and afterwards. RA, based on information theory and graph theory, resembles and partially overlaps Bayesian networks (BN) and log-linear techniques, but also has some unique capabilities. (A paper explaining the relationship between RA and BN will be given in this special session.) RA is designed for exploratory modeling although it can also be used for confirmatory hypothesis testing. In RA modeling, one either predicts some DV from a set of IVs …

Hypergraph Analysis Of Structure Models, Cliff A. Joslyn, Teresa D. Schmidt, Martin Zwick

Systems Science Faculty Publications and Presentations

Theoretical discussion on the analysis of hypergraph networks; application of analysis methods to hypergraph networks derived by applying Reconstructability Analysis to health care data (the PhD dissertation work of Teresa Schmidt).

Joint Lattice Of Reconstructability Analysis And Bayesian Network General Graphs, Marcus Harris, Martin Zwick

Systems Science Faculty Publications and Presentations

This paper integrates the structures considered in Reconstructability Analysis (RA) and those considered in Bayesian Networks (BN) into a joint lattice of probabilistic graphical models. This integration and associated lattice visualizations are done in this paper for four variables, but the approach can easily be expanded to more variables. The work builds on the RA work of Klir (1985), Krippendorff (1986), and Zwick (2001), and the BN work of Pearl (1985, 1987, 1988, 2000), Verma (1990), Heckerman (1994), Chickering (1995), Andersson (1997), and others. The RA four variable lattice and the BN four variable lattice partially overlap: there are ten …

Guided Reinvention As A Context For Investigating Students' Thinking About Mathematical Language And For Supporting Students In Gaining Fluency, Kristen Vroom

Dissertations and Theses

Fluency with mathematical language is important for students' engagement in many disciplinary practices such as defining, conjecturing, and proving; yet, there is growing evidence that mathematical language is challenging for undergraduate students. This dissertation study draws on two design experiments with pairs of students who were supported to encode their mathematical meanings with more formal language. I aimed to investigate the teaching and learning of mathematical language, and particularly the language in statements with multiple quantifiers, by engaging students in this type of activity. In the first paper, I investigated the complex ways in which the students in my study …

A Computer Science Academic Vocabulary List, David Roesler

Dissertations and Theses

This thesis documents the development of the Computer Science Academic Vocabulary List (CSAVL), a pedagogical tool intended for use by English-for-specific-purpose educators and material developers. A 3.5-million-word corpus of academic computer science textbooks and journal articles was developed in order to produce the CSAVL. This study draws on the improved methodologies used in the creation of recent lemma-based word lists such as the Academic Vocabulary List (AVL) and the Medical Academic Vocabulary List (MAVL), which take into account the discipline-specific meanings of academic vocabulary. The CSAVL provides specific information for each entry, including part of speech and CS-specific meanings in …

Mechanics Of Canopy Turbulence, Hawwa Falih Kadum

Dissertations and Theses

Large canopies interact with the atmospheric boundary layer (ABL) and alter transport of matter, energy, and momentum in accordance to their morphology. Canopy structure influence on turbulent processes can be utilized to achieve favorable interactions. Wind farm and forest canopies spatial arrangement is investigated in this work. Momentum fluxes investigated in a horizontal axis wind turbine (HAWT) array showed the existence of gusts of wind transported both from ABL above the canopy and the unperturbed flow below the canopy through sweep and ejection events. A new wind farm arrangement in which clusters of vertical axis wind turbines (VAWT) are collocated …

Understanding Institutional, Social, And Ecological Systems Influencing Climate Change Adaptation And Water Governance In Wine Regions: A Comparative Case Study Of Oregon's Willamette Valley, Usa And Tasmania, Australia, Erin Upton

Dissertations and Theses

My research examines how water management decisions create opportunities or barriers to climate change adaptation in wine regions. Water is a critical resource for economic and environmental sustainability in wine grape growing regions. Climate uncertainty presents considerable risk and vulnerability to freshwater resources in wine producing regions where needs for access to water will increase with more frequent climate extremes. Climate adaptation in the wine industry is a complex problem that requires multi-disciplinary approaches. This research aims to strengthen the interface between water governance and technological and viticulture adaptation approaches. Water resources are shared across regions by stakeholders with varied …

Testing The Correlation Of Trace Element Characteristics With The Petrology And Temperature Of Eruption Of Mid-Miocene Rhyolites In Eastern Oregon, Brianna Christine Young

Dissertations and Theses

The Lake Owyhee Volcanic Field (LOVF) in eastern Oregon experienced several major eruptive events during the mid-Miocene (16.8 to 15.5 Ma), resulting in the emplacement of 3,900 km³ of rhyolitic lava flows and ash-flow tuffs. Eighteen samples from eleven different silicic centers in the LOVF were selected for this study. While all samples of this study are classified as rhyolite, their compositions vary greatly in terms of trace and major elements. Using trace elements, these rhyolite samples are classified as "A-type", described as resulting from "hot and dry" magmas and associated with hot-spot activity, or as "I-type" or "calc-alkaline", …

The Rocky Ledge Fault, Shasta County, Ne California: Development And Morphology Of A Quaternary Oblique Normal Fault In Basalt, Gregory David Linscott Martin

Dissertations and Theses

Distinct morphology, variable vertical separation, and unique structural geometries are observed along the Rocky Ledge fault (RLF), an east-dipping, oblique normal fault in the tectonically complex Hat Creek Graben, Shasta County, NE California. Situated in the southern Cascade arc, the RLF is located at the boundary of the Klamath Mountains, Basin and Range, and Walker Lane Seismic Belt. The primary goal of this project is to better understand Quaternary deformation along the RLF. I developed detailed maps of geologic units and structures along the ~15 km length of the RLF. Map data informs assessment of fault geometry, scarp morphology, and …

Spatial Statistical Approaches To Water Quality Modelling, Janardan Mainali

Dissertations and Theses

This dissertation aims to advance the existing knowledge related to spatial modeling of water quality by exploring and introducing innovative approaches to different spatial conceptualizations for water quality modeling and incorporating upstream-downstream relations in geographically weighted regression. By carrying out a systematic literature review of four different classes of spatial models in Chapter One, this dissertation identifies the following major research gaps: lack of incorporation of multiscale processes, not enough emphasis on spatial weights matrices, and unavailability of upstream-downstream relationships in geographically weighted regressions. Chapters Two and Three were designed to address these gaps in the literature. In Chapter Two, …

Climate Toolkit: A Resource Manual For Science And Action - Version 2.0, Frank Granshaw

PDXOpen: Open Educational Resources

The Climate Toolkit is a resource manual designed to help the reader navigate the complex and perplexing issue of climate change by providing tools and strategies to explore the underlying science. As such it contains a collection of activities that make use of readily available on-line resources developed by research groups and public agencies. These include web-based climate models, climate data archives, interactive atlases, policy papers, and “solution” catalogs. Unlike a standard textbook, it is designed to help readers do their own climate research and devise their own perspective rather than providing them with a script to assimilate and repeat. …

Structure Aware Runge–Kutta Time Stepping For Spacetime Tents, Jay Gopalakrishnan, Joachim Schöberl, Christoph Wintersteiger

Mathematics and Statistics Faculty Publications and Presentations

We introduce a new class of Runge–Kutta type methods suitable for time stepping to propagate hyperbolic solutions within tent-shaped spacetime regions. Unlike standard Runge–Kutta methods, the new methods yield expected convergence properties when standard high order spatial (discontinuous Galerkin) discretizations are used. After presenting a derivation of nonstandard order conditions for these methods, we show numerical examples of nonlinear hyperbolic systems to demonstrate the optimal convergence rates. We also report on the discrete stability properties of these methods applied to linear hyperbolic equations.

Comparison Of Chemotherapeutic Activities Of Rhodamine-Based Gumbos And Nanogumbos, Nimisha Bhattarai, Mi Chen, Rocío L. Pérez, Sudhir Ravula, Robert Strongin, Karen Mcdonough, Isiah M. Warner

Chemistry Faculty Publications and Presentations

Rhodamine derivatives have been widely investigated for their mitochondrial targeting and chemotherapeutic properties that result from their lipophilic cationic structures. In previous research, we have found that conversion of Rhodamine 6G into nanoGUMBOS, i.e., nanomaterials derived from a group of uniform materials based on organic salts (GUMBOS), led to selective chemotherapeutic toxicity for cancer cells over normal cells. Herein, we investigate the chemotherapeutic activity of GUMBOS derived from four different rhodamine derivatives, two bearing an ester group, i.e., Rhodamine 123 (R123) and SNAFR-5, and two bearing a carboxylic acid group, i.e., rhodamine 110 (R110) and rhodamine B (RB). In this …

Investigation Of Evidence For The Internal Structure Of A Modified Science Motivation Questionnaire Ii (Msmq Ii): A Failed Attempt To Improve Instrument Functioning Across Course, Subject, And Wording Variants, Regis Komperda, Kathryn Hosbein, Michael M. Phillips, Jack Barbera

Chemistry Faculty Publications and Presentations

The Science Motivation Questionnaire II (SMQ II) was developed to measure aspects of student motivation in college-level science courses. Items on the SMQ II are structured such that the word ‘science’ can be replaced with any discipline title (e.g., chemistry) to produce a discipline-specific measure of student motivation. Since its original development as the Science Motivation Questionnaire and subsequent refinement, the SMQ II and its discipline-specific variants have been used in a number of science education studies. However, many studies have failed to produce acceptable validity evidence for their data based on the proposed internal structure of the …

A Framework For Incorporating Benefits From Urban Forests Into Planning For Livable Cities: A Case Study Of Forest Park, Carole Hardy

Environmental Science and Management Professional Master's Project Reports

Urban forests provide an escape from the noise and chaos of cities. Other services can be overlooked and under-valued. Urban forests cool and filter the air, sequester carbon, filter water removing toxins and sediments from urban runoff, provide habitat for wildlife and improve human health and well-being. Commonly urban forests in the United States (US) lack funds for restoration and research because there is lack of understanding of the need to actively manage what are perceived as wild lands. Generally urban forests are highly disturbed and novel ecosystems that require ongoing active management to remove invasive species, replant native species …

Addressing Parameter Uncertainty In Sd Models With Fit-To-History And Monte-Carlo Sensitivity Methods, Wayne Wakeland, Jack Homer

Systems Science Faculty Publications and Presentations

We present a practical guide, including a step-by-step flowchart, for establishing uncertainty intervals for key model outcomes in the face of uncertain parameters. The process starts with Powell optimization (e.g., using VensimTM) to find a set of uncertain parameters (the “optimum” parameter set or OPS) that minimize the model fitness error relative to available reference behavior data. The optimization process also helps in refinement of assumed parameter uncertainty ranges. Next, Markov Chain Monte Carlo (MCMC) or conventional Monte Carlo (MC) randomization is used to create a sample of parameter sets that fit the reference behavior data nearly as well as …